Job ID = 16432962 SRX = SRX13336911 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 43070903 spots for SRR17152877/SRR17152877.sra Written 43070903 spots for SRR17152877/SRR17152877.sra fastq に変換しました。 bowtie でマッピング中... Your job 16436273 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:29:13 43070903 reads; of these: 43070903 (100.00%) were paired; of these: 24565636 (57.04%) aligned concordantly 0 times 16623834 (38.60%) aligned concordantly exactly 1 time 1881433 (4.37%) aligned concordantly >1 times ---- 24565636 pairs aligned concordantly 0 times; of these: 12118088 (49.33%) aligned discordantly 1 time ---- 12447548 pairs aligned 0 times concordantly or discordantly; of these: 24895096 mates make up the pairs; of these: 20474995 (82.25%) aligned 0 times 2424463 (9.74%) aligned exactly 1 time 1995638 (8.02%) aligned >1 times 76.23% overall alignment rate Time searching: 01:29:14 Overall time: 01:29:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 48 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4354470 / 30565545 = 0.1425 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 11:56:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 11:56:11: #1 read tag files... INFO @ Tue, 02 Aug 2022 11:56:11: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 11:56:19: 1000000 INFO @ Tue, 02 Aug 2022 11:56:28: 2000000 INFO @ Tue, 02 Aug 2022 11:56:36: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 11:56:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 11:56:40: #1 read tag files... INFO @ Tue, 02 Aug 2022 11:56:40: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 11:56:44: 4000000 INFO @ Tue, 02 Aug 2022 11:56:48: 1000000 INFO @ Tue, 02 Aug 2022 11:56:52: 5000000 INFO @ Tue, 02 Aug 2022 11:56:56: 2000000 INFO @ Tue, 02 Aug 2022 11:57:01: 6000000 INFO @ Tue, 02 Aug 2022 11:57:04: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 11:57:10: 7000000 INFO @ Tue, 02 Aug 2022 11:57:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 11:57:10: #1 read tag files... INFO @ Tue, 02 Aug 2022 11:57:10: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 11:57:12: 4000000 INFO @ Tue, 02 Aug 2022 11:57:19: 1000000 INFO @ Tue, 02 Aug 2022 11:57:19: 8000000 INFO @ Tue, 02 Aug 2022 11:57:21: 5000000 INFO @ Tue, 02 Aug 2022 11:57:27: 2000000 INFO @ Tue, 02 Aug 2022 11:57:28: 9000000 INFO @ Tue, 02 Aug 2022 11:57:29: 6000000 INFO @ Tue, 02 Aug 2022 11:57:36: 3000000 INFO @ Tue, 02 Aug 2022 11:57:37: 10000000 INFO @ Tue, 02 Aug 2022 11:57:38: 7000000 INFO @ Tue, 02 Aug 2022 11:57:45: 4000000 INFO @ Tue, 02 Aug 2022 11:57:48: 11000000 INFO @ Tue, 02 Aug 2022 11:57:48: 8000000 INFO @ Tue, 02 Aug 2022 11:57:55: 5000000 INFO @ Tue, 02 Aug 2022 11:57:57: 12000000 INFO @ Tue, 02 Aug 2022 11:57:57: 9000000 INFO @ Tue, 02 Aug 2022 11:58:04: 6000000 INFO @ Tue, 02 Aug 2022 11:58:05: 13000000 INFO @ Tue, 02 Aug 2022 11:58:06: 10000000 INFO @ Tue, 02 Aug 2022 11:58:13: 14000000 INFO @ Tue, 02 Aug 2022 11:58:13: 7000000 INFO @ Tue, 02 Aug 2022 11:58:15: 11000000 INFO @ Tue, 02 Aug 2022 11:58:22: 15000000 INFO @ Tue, 02 Aug 2022 11:58:22: 8000000 INFO @ Tue, 02 Aug 2022 11:58:23: 12000000 INFO @ Tue, 02 Aug 2022 11:58:31: 13000000 INFO @ Tue, 02 Aug 2022 11:58:32: 16000000 INFO @ Tue, 02 Aug 2022 11:58:33: 9000000 INFO @ Tue, 02 Aug 2022 11:58:39: 14000000 INFO @ Tue, 02 Aug 2022 11:58:41: 17000000 INFO @ Tue, 02 Aug 2022 11:58:42: 10000000 INFO @ Tue, 02 Aug 2022 11:58:48: 15000000 INFO @ Tue, 02 Aug 2022 11:58:49: 18000000 INFO @ Tue, 02 Aug 2022 11:58:51: 11000000 INFO @ Tue, 02 Aug 2022 11:58:56: 16000000 INFO @ Tue, 02 Aug 2022 11:58:58: 19000000 INFO @ Tue, 02 Aug 2022 11:58:59: 12000000 INFO @ Tue, 02 Aug 2022 11:59:05: 17000000 INFO @ Tue, 02 Aug 2022 11:59:06: 20000000 INFO @ Tue, 02 Aug 2022 11:59:08: 13000000 INFO @ Tue, 02 Aug 2022 11:59:13: 18000000 INFO @ Tue, 02 Aug 2022 11:59:14: 21000000 INFO @ Tue, 02 Aug 2022 11:59:16: 14000000 INFO @ Tue, 02 Aug 2022 11:59:22: 19000000 INFO @ Tue, 02 Aug 2022 11:59:23: 22000000 INFO @ Tue, 02 Aug 2022 11:59:25: 15000000 INFO @ Tue, 02 Aug 2022 11:59:30: 20000000 INFO @ Tue, 02 Aug 2022 11:59:31: 23000000 INFO @ Tue, 02 Aug 2022 11:59:34: 16000000 INFO @ Tue, 02 Aug 2022 11:59:39: 21000000 INFO @ Tue, 02 Aug 2022 11:59:39: 24000000 INFO @ Tue, 02 Aug 2022 11:59:42: 17000000 INFO @ Tue, 02 Aug 2022 11:59:47: 22000000 INFO @ Tue, 02 Aug 2022 11:59:48: 25000000 INFO @ Tue, 02 Aug 2022 11:59:51: 18000000 INFO @ Tue, 02 Aug 2022 11:59:56: 26000000 INFO @ Tue, 02 Aug 2022 11:59:56: 23000000 INFO @ Tue, 02 Aug 2022 11:59:59: 19000000 INFO @ Tue, 02 Aug 2022 12:00:04: 27000000 INFO @ Tue, 02 Aug 2022 12:00:05: 24000000 INFO @ Tue, 02 Aug 2022 12:00:08: 20000000 INFO @ Tue, 02 Aug 2022 12:00:13: 28000000 INFO @ Tue, 02 Aug 2022 12:00:13: 25000000 INFO @ Tue, 02 Aug 2022 12:00:16: 21000000 INFO @ Tue, 02 Aug 2022 12:00:21: 29000000 INFO @ Tue, 02 Aug 2022 12:00:22: 26000000 INFO @ Tue, 02 Aug 2022 12:00:25: 22000000 INFO @ Tue, 02 Aug 2022 12:00:29: 30000000 INFO @ Tue, 02 Aug 2022 12:00:30: 27000000 INFO @ Tue, 02 Aug 2022 12:00:33: 23000000 INFO @ Tue, 02 Aug 2022 12:00:38: 31000000 INFO @ Tue, 02 Aug 2022 12:00:39: 28000000 INFO @ Tue, 02 Aug 2022 12:00:42: 24000000 INFO @ Tue, 02 Aug 2022 12:00:47: 32000000 INFO @ Tue, 02 Aug 2022 12:00:47: 29000000 INFO @ Tue, 02 Aug 2022 12:00:50: 25000000 INFO @ Tue, 02 Aug 2022 12:00:56: 30000000 INFO @ Tue, 02 Aug 2022 12:00:56: 33000000 INFO @ Tue, 02 Aug 2022 12:00:59: 26000000 INFO @ Tue, 02 Aug 2022 12:01:04: 31000000 INFO @ Tue, 02 Aug 2022 12:01:06: 34000000 INFO @ Tue, 02 Aug 2022 12:01:08: 27000000 INFO @ Tue, 02 Aug 2022 12:01:13: 32000000 INFO @ Tue, 02 Aug 2022 12:01:16: 35000000 INFO @ Tue, 02 Aug 2022 12:01:17: 28000000 INFO @ Tue, 02 Aug 2022 12:01:23: 33000000 INFO @ Tue, 02 Aug 2022 12:01:26: 36000000 INFO @ Tue, 02 Aug 2022 12:01:27: 29000000 INFO @ Tue, 02 Aug 2022 12:01:32: 34000000 INFO @ Tue, 02 Aug 2022 12:01:36: 37000000 INFO @ Tue, 02 Aug 2022 12:01:36: 30000000 INFO @ Tue, 02 Aug 2022 12:01:41: 35000000 INFO @ Tue, 02 Aug 2022 12:01:45: 31000000 INFO @ Tue, 02 Aug 2022 12:01:47: 38000000 INFO @ Tue, 02 Aug 2022 12:01:49: 36000000 INFO @ Tue, 02 Aug 2022 12:01:54: 32000000 INFO @ Tue, 02 Aug 2022 12:01:58: 37000000 INFO @ Tue, 02 Aug 2022 12:01:58: 39000000 INFO @ Tue, 02 Aug 2022 12:02:03: 33000000 INFO @ Tue, 02 Aug 2022 12:02:07: 38000000 INFO @ Tue, 02 Aug 2022 12:02:09: 40000000 INFO @ Tue, 02 Aug 2022 12:02:13: 34000000 INFO @ Tue, 02 Aug 2022 12:02:17: 39000000 INFO @ Tue, 02 Aug 2022 12:02:21: 41000000 INFO @ Tue, 02 Aug 2022 12:02:22: 35000000 INFO @ Tue, 02 Aug 2022 12:02:26: 40000000 INFO @ Tue, 02 Aug 2022 12:02:32: 42000000 INFO @ Tue, 02 Aug 2022 12:02:34: 36000000 INFO @ Tue, 02 Aug 2022 12:02:35: 41000000 INFO @ Tue, 02 Aug 2022 12:02:43: 37000000 INFO @ Tue, 02 Aug 2022 12:02:43: 43000000 INFO @ Tue, 02 Aug 2022 12:02:44: 42000000 INFO @ Tue, 02 Aug 2022 12:02:52: 38000000 INFO @ Tue, 02 Aug 2022 12:02:53: 43000000 INFO @ Tue, 02 Aug 2022 12:02:56: 44000000 INFO @ Tue, 02 Aug 2022 12:03:01: 39000000 INFO @ Tue, 02 Aug 2022 12:03:01: 44000000 INFO @ Tue, 02 Aug 2022 12:03:07: 45000000 INFO @ Tue, 02 Aug 2022 12:03:10: 40000000 INFO @ Tue, 02 Aug 2022 12:03:10: 45000000 INFO @ Tue, 02 Aug 2022 12:03:18: 41000000 INFO @ Tue, 02 Aug 2022 12:03:19: 46000000 INFO @ Tue, 02 Aug 2022 12:03:19: 46000000 INFO @ Tue, 02 Aug 2022 12:03:27: 42000000 INFO @ Tue, 02 Aug 2022 12:03:27: 47000000 INFO @ Tue, 02 Aug 2022 12:03:31: 47000000 INFO @ Tue, 02 Aug 2022 12:03:35: 43000000 INFO @ Tue, 02 Aug 2022 12:03:36: 48000000 INFO @ Tue, 02 Aug 2022 12:03:42: 48000000 INFO @ Tue, 02 Aug 2022 12:03:43: 44000000 INFO @ Tue, 02 Aug 2022 12:03:44: 49000000 INFO @ Tue, 02 Aug 2022 12:03:52: 45000000 INFO @ Tue, 02 Aug 2022 12:03:53: 50000000 INFO @ Tue, 02 Aug 2022 12:03:54: 49000000 INFO @ Tue, 02 Aug 2022 12:04:00: 46000000 INFO @ Tue, 02 Aug 2022 12:04:01: 51000000 INFO @ Tue, 02 Aug 2022 12:04:06: 50000000 INFO @ Tue, 02 Aug 2022 12:04:09: 47000000 INFO @ Tue, 02 Aug 2022 12:04:10: 52000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:04:17: 48000000 INFO @ Tue, 02 Aug 2022 12:04:19: 51000000 INFO @ Tue, 02 Aug 2022 12:04:23: 53000000 INFO @ Tue, 02 Aug 2022 12:04:25: 49000000 INFO @ Tue, 02 Aug 2022 12:04:31: 52000000 INFO @ Tue, 02 Aug 2022 12:04:31: 54000000 INFO @ Tue, 02 Aug 2022 12:04:33: 50000000 INFO @ Tue, 02 Aug 2022 12:04:40: 55000000 INFO @ Tue, 02 Aug 2022 12:04:42: 51000000 INFO @ Tue, 02 Aug 2022 12:04:43: 53000000 INFO @ Tue, 02 Aug 2022 12:04:49: 56000000 INFO @ Tue, 02 Aug 2022 12:04:51: 52000000 INFO @ Tue, 02 Aug 2022 12:04:55: 54000000 INFO @ Tue, 02 Aug 2022 12:04:57: #1 tag size is determined as 150 bps INFO @ Tue, 02 Aug 2022 12:04:57: #1 tag size = 150 INFO @ Tue, 02 Aug 2022 12:04:57: #1 total tags in treatment: 15564557 INFO @ Tue, 02 Aug 2022 12:04:57: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:04:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:04:58: #1 tags after filtering in treatment: 14509394 INFO @ Tue, 02 Aug 2022 12:04:58: #1 Redundant rate of treatment: 0.07 INFO @ Tue, 02 Aug 2022 12:04:58: #1 finished! INFO @ Tue, 02 Aug 2022 12:04:58: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:04:58: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:04:59: #2 number of paired peaks: 220 WARNING @ Tue, 02 Aug 2022 12:04:59: Fewer paired peaks (220) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 220 pairs to build model! INFO @ Tue, 02 Aug 2022 12:04:59: start model_add_line... INFO @ Tue, 02 Aug 2022 12:04:59: start X-correlation... INFO @ Tue, 02 Aug 2022 12:04:59: end of X-cor INFO @ Tue, 02 Aug 2022 12:04:59: #2 finished! INFO @ Tue, 02 Aug 2022 12:04:59: #2 predicted fragment length is 228 bps INFO @ Tue, 02 Aug 2022 12:04:59: #2 alternative fragment length(s) may be 228 bps INFO @ Tue, 02 Aug 2022 12:04:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.10_model.r WARNING @ Tue, 02 Aug 2022 12:04:59: #2 Since the d (228) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:04:59: #2 You may need to consider one of the other alternative d(s): 228 WARNING @ Tue, 02 Aug 2022 12:04:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:04:59: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:04:59: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:04:59: 53000000 INFO @ Tue, 02 Aug 2022 12:05:07: 55000000 INFO @ Tue, 02 Aug 2022 12:05:07: 54000000 INFO @ Tue, 02 Aug 2022 12:05:15: 55000000 INFO @ Tue, 02 Aug 2022 12:05:19: 56000000 INFO @ Tue, 02 Aug 2022 12:05:23: 56000000 INFO @ Tue, 02 Aug 2022 12:05:30: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:05:31: #1 tag size is determined as 150 bps INFO @ Tue, 02 Aug 2022 12:05:31: #1 tag size = 150 INFO @ Tue, 02 Aug 2022 12:05:31: #1 total tags in treatment: 15564557 INFO @ Tue, 02 Aug 2022 12:05:31: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:05:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:05:31: #1 tag size is determined as 150 bps INFO @ Tue, 02 Aug 2022 12:05:31: #1 tag size = 150 INFO @ Tue, 02 Aug 2022 12:05:31: #1 total tags in treatment: 15564557 INFO @ Tue, 02 Aug 2022 12:05:31: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:05:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:05:31: #1 tags after filtering in treatment: 14509394 INFO @ Tue, 02 Aug 2022 12:05:31: #1 Redundant rate of treatment: 0.07 INFO @ Tue, 02 Aug 2022 12:05:31: #1 finished! INFO @ Tue, 02 Aug 2022 12:05:31: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:05:31: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:05:31: #1 tags after filtering in treatment: 14509394 INFO @ Tue, 02 Aug 2022 12:05:31: #1 Redundant rate of treatment: 0.07 INFO @ Tue, 02 Aug 2022 12:05:31: #1 finished! INFO @ Tue, 02 Aug 2022 12:05:31: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:05:31: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:05:32: #2 number of paired peaks: 220 WARNING @ Tue, 02 Aug 2022 12:05:32: Fewer paired peaks (220) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 220 pairs to build model! INFO @ Tue, 02 Aug 2022 12:05:32: start model_add_line... INFO @ Tue, 02 Aug 2022 12:05:32: #2 number of paired peaks: 220 WARNING @ Tue, 02 Aug 2022 12:05:32: Fewer paired peaks (220) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 220 pairs to build model! INFO @ Tue, 02 Aug 2022 12:05:32: start model_add_line... INFO @ Tue, 02 Aug 2022 12:05:32: start X-correlation... INFO @ Tue, 02 Aug 2022 12:05:32: end of X-cor INFO @ Tue, 02 Aug 2022 12:05:32: #2 finished! INFO @ Tue, 02 Aug 2022 12:05:32: #2 predicted fragment length is 228 bps INFO @ Tue, 02 Aug 2022 12:05:32: #2 alternative fragment length(s) may be 228 bps INFO @ Tue, 02 Aug 2022 12:05:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.20_model.r WARNING @ Tue, 02 Aug 2022 12:05:32: #2 Since the d (228) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:05:32: #2 You may need to consider one of the other alternative d(s): 228 WARNING @ Tue, 02 Aug 2022 12:05:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:05:32: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:05:32: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:05:32: start X-correlation... INFO @ Tue, 02 Aug 2022 12:05:32: end of X-cor INFO @ Tue, 02 Aug 2022 12:05:32: #2 finished! INFO @ Tue, 02 Aug 2022 12:05:32: #2 predicted fragment length is 228 bps INFO @ Tue, 02 Aug 2022 12:05:32: #2 alternative fragment length(s) may be 228 bps INFO @ Tue, 02 Aug 2022 12:05:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.05_model.r WARNING @ Tue, 02 Aug 2022 12:05:32: #2 Since the d (228) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:05:32: #2 You may need to consider one of the other alternative d(s): 228 WARNING @ Tue, 02 Aug 2022 12:05:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:05:32: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:05:32: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:05:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:05:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:05:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.10_summits.bed INFO @ Tue, 02 Aug 2022 12:05:43: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (363 records, 4 fields): 70 millis CompletedMACS2peakCalling BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:06:01: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:06:02: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:06:16: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:06:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:06:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.05_summits.bed INFO @ Tue, 02 Aug 2022 12:06:16: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (577 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:06:17: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:06:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:06:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX13336911/SRX13336911.20_summits.bed INFO @ Tue, 02 Aug 2022 12:06:17: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (254 records, 4 fields): 20 millis CompletedMACS2peakCalling