Job ID = 14158157 SRX = SRX10342576 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 21556334 spots for SRR13964608/SRR13964608.sra Written 21556334 spots for SRR13964608/SRR13964608.sra Read 21610664 spots for SRR13964609/SRR13964609.sra Written 21610664 spots for SRR13964609/SRR13964609.sra fastq に変換しました。 bowtie でマッピング中... Your job 14158768 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:47:21 43166998 reads; of these: 43166998 (100.00%) were paired; of these: 6383993 (14.79%) aligned concordantly 0 times 27441244 (63.57%) aligned concordantly exactly 1 time 9341761 (21.64%) aligned concordantly >1 times ---- 6383993 pairs aligned concordantly 0 times; of these: 2003610 (31.38%) aligned discordantly 1 time ---- 4380383 pairs aligned 0 times concordantly or discordantly; of these: 8760766 mates make up the pairs; of these: 6306635 (71.99%) aligned 0 times 1132569 (12.93%) aligned exactly 1 time 1321562 (15.09%) aligned >1 times 92.70% overall alignment rate Time searching: 00:47:21 Overall time: 00:47:21 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 11908660 / 38645963 = 0.3081 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 15:39:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 15:39:37: #1 read tag files... INFO @ Wed, 08 Dec 2021 15:39:37: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 15:39:42: 1000000 INFO @ Wed, 08 Dec 2021 15:39:47: 2000000 INFO @ Wed, 08 Dec 2021 15:39:52: 3000000 INFO @ Wed, 08 Dec 2021 15:39:57: 4000000 INFO @ Wed, 08 Dec 2021 15:40:02: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 15:40:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 15:40:06: #1 read tag files... INFO @ Wed, 08 Dec 2021 15:40:06: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 15:40:06: 6000000 INFO @ Wed, 08 Dec 2021 15:40:12: 1000000 INFO @ Wed, 08 Dec 2021 15:40:12: 7000000 INFO @ Wed, 08 Dec 2021 15:40:18: 2000000 INFO @ Wed, 08 Dec 2021 15:40:18: 8000000 INFO @ Wed, 08 Dec 2021 15:40:23: 9000000 INFO @ Wed, 08 Dec 2021 15:40:23: 3000000 INFO @ Wed, 08 Dec 2021 15:40:29: 10000000 INFO @ Wed, 08 Dec 2021 15:40:29: 4000000 INFO @ Wed, 08 Dec 2021 15:40:35: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 15:40:35: 5000000 INFO @ Wed, 08 Dec 2021 15:40:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 15:40:36: #1 read tag files... INFO @ Wed, 08 Dec 2021 15:40:36: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 15:40:40: 12000000 INFO @ Wed, 08 Dec 2021 15:40:40: 6000000 INFO @ Wed, 08 Dec 2021 15:40:42: 1000000 INFO @ Wed, 08 Dec 2021 15:40:46: 13000000 INFO @ Wed, 08 Dec 2021 15:40:46: 7000000 INFO @ Wed, 08 Dec 2021 15:40:48: 2000000 INFO @ Wed, 08 Dec 2021 15:40:52: 14000000 INFO @ Wed, 08 Dec 2021 15:40:52: 8000000 INFO @ Wed, 08 Dec 2021 15:40:54: 3000000 INFO @ Wed, 08 Dec 2021 15:40:57: 15000000 INFO @ Wed, 08 Dec 2021 15:40:58: 9000000 INFO @ Wed, 08 Dec 2021 15:40:59: 4000000 INFO @ Wed, 08 Dec 2021 15:41:03: 16000000 INFO @ Wed, 08 Dec 2021 15:41:03: 10000000 INFO @ Wed, 08 Dec 2021 15:41:05: 5000000 INFO @ Wed, 08 Dec 2021 15:41:09: 17000000 INFO @ Wed, 08 Dec 2021 15:41:09: 11000000 INFO @ Wed, 08 Dec 2021 15:41:11: 6000000 INFO @ Wed, 08 Dec 2021 15:41:14: 18000000 INFO @ Wed, 08 Dec 2021 15:41:15: 12000000 INFO @ Wed, 08 Dec 2021 15:41:17: 7000000 INFO @ Wed, 08 Dec 2021 15:41:20: 19000000 INFO @ Wed, 08 Dec 2021 15:41:21: 13000000 INFO @ Wed, 08 Dec 2021 15:41:22: 8000000 INFO @ Wed, 08 Dec 2021 15:41:26: 20000000 INFO @ Wed, 08 Dec 2021 15:41:26: 14000000 INFO @ Wed, 08 Dec 2021 15:41:28: 9000000 INFO @ Wed, 08 Dec 2021 15:41:32: 21000000 INFO @ Wed, 08 Dec 2021 15:41:32: 15000000 INFO @ Wed, 08 Dec 2021 15:41:34: 10000000 INFO @ Wed, 08 Dec 2021 15:41:37: 22000000 INFO @ Wed, 08 Dec 2021 15:41:38: 16000000 INFO @ Wed, 08 Dec 2021 15:41:40: 11000000 INFO @ Wed, 08 Dec 2021 15:41:43: 23000000 INFO @ Wed, 08 Dec 2021 15:41:43: 17000000 INFO @ Wed, 08 Dec 2021 15:41:45: 12000000 INFO @ Wed, 08 Dec 2021 15:41:48: 24000000 INFO @ Wed, 08 Dec 2021 15:41:49: 18000000 INFO @ Wed, 08 Dec 2021 15:41:51: 13000000 INFO @ Wed, 08 Dec 2021 15:41:54: 25000000 INFO @ Wed, 08 Dec 2021 15:41:55: 19000000 INFO @ Wed, 08 Dec 2021 15:41:57: 14000000 INFO @ Wed, 08 Dec 2021 15:42:00: 26000000 INFO @ Wed, 08 Dec 2021 15:42:01: 20000000 INFO @ Wed, 08 Dec 2021 15:42:03: 15000000 INFO @ Wed, 08 Dec 2021 15:42:05: 27000000 INFO @ Wed, 08 Dec 2021 15:42:06: 21000000 INFO @ Wed, 08 Dec 2021 15:42:08: 16000000 INFO @ Wed, 08 Dec 2021 15:42:11: 28000000 INFO @ Wed, 08 Dec 2021 15:42:12: 22000000 INFO @ Wed, 08 Dec 2021 15:42:14: 17000000 INFO @ Wed, 08 Dec 2021 15:42:17: 29000000 INFO @ Wed, 08 Dec 2021 15:42:18: 23000000 INFO @ Wed, 08 Dec 2021 15:42:20: 18000000 INFO @ Wed, 08 Dec 2021 15:42:22: 30000000 INFO @ Wed, 08 Dec 2021 15:42:23: 24000000 INFO @ Wed, 08 Dec 2021 15:42:26: 19000000 INFO @ Wed, 08 Dec 2021 15:42:28: 31000000 INFO @ Wed, 08 Dec 2021 15:42:29: 25000000 INFO @ Wed, 08 Dec 2021 15:42:31: 20000000 INFO @ Wed, 08 Dec 2021 15:42:34: 32000000 INFO @ Wed, 08 Dec 2021 15:42:35: 26000000 INFO @ Wed, 08 Dec 2021 15:42:37: 21000000 INFO @ Wed, 08 Dec 2021 15:42:39: 33000000 INFO @ Wed, 08 Dec 2021 15:42:40: 27000000 INFO @ Wed, 08 Dec 2021 15:42:43: 22000000 INFO @ Wed, 08 Dec 2021 15:42:45: 34000000 INFO @ Wed, 08 Dec 2021 15:42:46: 28000000 INFO @ Wed, 08 Dec 2021 15:42:48: 23000000 INFO @ Wed, 08 Dec 2021 15:42:50: 35000000 INFO @ Wed, 08 Dec 2021 15:42:51: 29000000 INFO @ Wed, 08 Dec 2021 15:42:54: 24000000 INFO @ Wed, 08 Dec 2021 15:42:56: 36000000 INFO @ Wed, 08 Dec 2021 15:42:57: 30000000 INFO @ Wed, 08 Dec 2021 15:42:59: 25000000 INFO @ Wed, 08 Dec 2021 15:43:02: 37000000 INFO @ Wed, 08 Dec 2021 15:43:02: 31000000 INFO @ Wed, 08 Dec 2021 15:43:05: 26000000 INFO @ Wed, 08 Dec 2021 15:43:07: 38000000 INFO @ Wed, 08 Dec 2021 15:43:08: 32000000 INFO @ Wed, 08 Dec 2021 15:43:11: 27000000 INFO @ Wed, 08 Dec 2021 15:43:13: 39000000 INFO @ Wed, 08 Dec 2021 15:43:14: 33000000 INFO @ Wed, 08 Dec 2021 15:43:16: 28000000 INFO @ Wed, 08 Dec 2021 15:43:18: 40000000 INFO @ Wed, 08 Dec 2021 15:43:19: 34000000 INFO @ Wed, 08 Dec 2021 15:43:22: 29000000 INFO @ Wed, 08 Dec 2021 15:43:24: 41000000 INFO @ Wed, 08 Dec 2021 15:43:25: 35000000 INFO @ Wed, 08 Dec 2021 15:43:28: 30000000 INFO @ Wed, 08 Dec 2021 15:43:30: 42000000 INFO @ Wed, 08 Dec 2021 15:43:31: 36000000 INFO @ Wed, 08 Dec 2021 15:43:33: 31000000 INFO @ Wed, 08 Dec 2021 15:43:35: 43000000 INFO @ Wed, 08 Dec 2021 15:43:36: 37000000 INFO @ Wed, 08 Dec 2021 15:43:39: 32000000 INFO @ Wed, 08 Dec 2021 15:43:41: 44000000 INFO @ Wed, 08 Dec 2021 15:43:42: 38000000 INFO @ Wed, 08 Dec 2021 15:43:44: 33000000 INFO @ Wed, 08 Dec 2021 15:43:47: 45000000 INFO @ Wed, 08 Dec 2021 15:43:47: 39000000 INFO @ Wed, 08 Dec 2021 15:43:50: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 08 Dec 2021 15:43:52: 46000000 INFO @ Wed, 08 Dec 2021 15:43:53: 40000000 INFO @ Wed, 08 Dec 2021 15:43:56: 35000000 INFO @ Wed, 08 Dec 2021 15:43:58: 47000000 INFO @ Wed, 08 Dec 2021 15:43:58: 41000000 INFO @ Wed, 08 Dec 2021 15:44:01: 36000000 INFO @ Wed, 08 Dec 2021 15:44:03: 48000000 INFO @ Wed, 08 Dec 2021 15:44:04: 42000000 INFO @ Wed, 08 Dec 2021 15:44:07: 37000000 INFO @ Wed, 08 Dec 2021 15:44:09: 49000000 INFO @ Wed, 08 Dec 2021 15:44:10: 43000000 INFO @ Wed, 08 Dec 2021 15:44:13: 38000000 INFO @ Wed, 08 Dec 2021 15:44:15: 50000000 INFO @ Wed, 08 Dec 2021 15:44:15: 44000000 INFO @ Wed, 08 Dec 2021 15:44:18: 39000000 INFO @ Wed, 08 Dec 2021 15:44:20: 51000000 INFO @ Wed, 08 Dec 2021 15:44:21: 45000000 INFO @ Wed, 08 Dec 2021 15:44:24: 40000000 INFO @ Wed, 08 Dec 2021 15:44:26: 52000000 INFO @ Wed, 08 Dec 2021 15:44:27: 46000000 INFO @ Wed, 08 Dec 2021 15:44:29: 41000000 INFO @ Wed, 08 Dec 2021 15:44:31: 53000000 INFO @ Wed, 08 Dec 2021 15:44:32: 47000000 INFO @ Wed, 08 Dec 2021 15:44:35: 42000000 INFO @ Wed, 08 Dec 2021 15:44:37: 54000000 INFO @ Wed, 08 Dec 2021 15:44:38: 48000000 INFO @ Wed, 08 Dec 2021 15:44:41: 43000000 INFO @ Wed, 08 Dec 2021 15:44:42: 55000000 INFO @ Wed, 08 Dec 2021 15:44:43: 49000000 INFO @ Wed, 08 Dec 2021 15:44:46: 44000000 INFO @ Wed, 08 Dec 2021 15:44:48: 56000000 INFO @ Wed, 08 Dec 2021 15:44:49: 50000000 INFO @ Wed, 08 Dec 2021 15:44:49: #1 tag size is determined as 51 bps INFO @ Wed, 08 Dec 2021 15:44:49: #1 tag size = 51 INFO @ Wed, 08 Dec 2021 15:44:49: #1 total tags in treatment: 25234229 INFO @ Wed, 08 Dec 2021 15:44:49: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 15:44:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 15:44:50: #1 tags after filtering in treatment: 19987695 INFO @ Wed, 08 Dec 2021 15:44:50: #1 Redundant rate of treatment: 0.21 INFO @ Wed, 08 Dec 2021 15:44:50: #1 finished! INFO @ Wed, 08 Dec 2021 15:44:50: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 15:44:50: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 15:44:51: #2 number of paired peaks: 594 WARNING @ Wed, 08 Dec 2021 15:44:51: Fewer paired peaks (594) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 594 pairs to build model! INFO @ Wed, 08 Dec 2021 15:44:51: start model_add_line... INFO @ Wed, 08 Dec 2021 15:44:51: start X-correlation... INFO @ Wed, 08 Dec 2021 15:44:51: end of X-cor INFO @ Wed, 08 Dec 2021 15:44:51: #2 finished! INFO @ Wed, 08 Dec 2021 15:44:51: #2 predicted fragment length is 120 bps INFO @ Wed, 08 Dec 2021 15:44:51: #2 alternative fragment length(s) may be 2,101,120,133 bps INFO @ Wed, 08 Dec 2021 15:44:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.05_model.r INFO @ Wed, 08 Dec 2021 15:44:51: #3 Call peaks... INFO @ Wed, 08 Dec 2021 15:44:51: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 15:44:52: 45000000 INFO @ Wed, 08 Dec 2021 15:44:55: 51000000 INFO @ Wed, 08 Dec 2021 15:44:57: 46000000 INFO @ Wed, 08 Dec 2021 15:45:00: 52000000 BigWig に変換しました。 INFO @ Wed, 08 Dec 2021 15:45:03: 47000000 INFO @ Wed, 08 Dec 2021 15:45:05: 53000000 INFO @ Wed, 08 Dec 2021 15:45:08: 48000000 INFO @ Wed, 08 Dec 2021 15:45:11: 54000000 INFO @ Wed, 08 Dec 2021 15:45:14: 49000000 INFO @ Wed, 08 Dec 2021 15:45:16: 55000000 INFO @ Wed, 08 Dec 2021 15:45:19: 50000000 INFO @ Wed, 08 Dec 2021 15:45:22: 56000000 INFO @ Wed, 08 Dec 2021 15:45:23: #1 tag size is determined as 51 bps INFO @ Wed, 08 Dec 2021 15:45:23: #1 tag size = 51 INFO @ Wed, 08 Dec 2021 15:45:23: #1 total tags in treatment: 25234229 INFO @ Wed, 08 Dec 2021 15:45:23: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 15:45:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 15:45:24: #1 tags after filtering in treatment: 19987695 INFO @ Wed, 08 Dec 2021 15:45:24: #1 Redundant rate of treatment: 0.21 INFO @ Wed, 08 Dec 2021 15:45:24: #1 finished! INFO @ Wed, 08 Dec 2021 15:45:24: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 15:45:24: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 15:45:25: 51000000 INFO @ Wed, 08 Dec 2021 15:45:25: #2 number of paired peaks: 594 WARNING @ Wed, 08 Dec 2021 15:45:25: Fewer paired peaks (594) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 594 pairs to build model! INFO @ Wed, 08 Dec 2021 15:45:25: start model_add_line... INFO @ Wed, 08 Dec 2021 15:45:25: start X-correlation... INFO @ Wed, 08 Dec 2021 15:45:25: end of X-cor INFO @ Wed, 08 Dec 2021 15:45:25: #2 finished! INFO @ Wed, 08 Dec 2021 15:45:25: #2 predicted fragment length is 120 bps INFO @ Wed, 08 Dec 2021 15:45:25: #2 alternative fragment length(s) may be 2,101,120,133 bps INFO @ Wed, 08 Dec 2021 15:45:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.10_model.r INFO @ Wed, 08 Dec 2021 15:45:25: #3 Call peaks... INFO @ Wed, 08 Dec 2021 15:45:25: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 15:45:26: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 15:45:30: 52000000 INFO @ Wed, 08 Dec 2021 15:45:35: 53000000 INFO @ Wed, 08 Dec 2021 15:45:40: 54000000 INFO @ Wed, 08 Dec 2021 15:45:42: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.05_peaks.xls INFO @ Wed, 08 Dec 2021 15:45:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.05_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 15:45:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.05_summits.bed INFO @ Wed, 08 Dec 2021 15:45:42: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (2172 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 15:45:46: 55000000 INFO @ Wed, 08 Dec 2021 15:45:51: 56000000 INFO @ Wed, 08 Dec 2021 15:45:52: #1 tag size is determined as 51 bps INFO @ Wed, 08 Dec 2021 15:45:52: #1 tag size = 51 INFO @ Wed, 08 Dec 2021 15:45:52: #1 total tags in treatment: 25234229 INFO @ Wed, 08 Dec 2021 15:45:52: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 15:45:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 15:45:52: #1 tags after filtering in treatment: 19987695 INFO @ Wed, 08 Dec 2021 15:45:52: #1 Redundant rate of treatment: 0.21 INFO @ Wed, 08 Dec 2021 15:45:52: #1 finished! INFO @ Wed, 08 Dec 2021 15:45:52: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 15:45:52: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 15:45:54: #2 number of paired peaks: 594 WARNING @ Wed, 08 Dec 2021 15:45:54: Fewer paired peaks (594) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 594 pairs to build model! INFO @ Wed, 08 Dec 2021 15:45:54: start model_add_line... INFO @ Wed, 08 Dec 2021 15:45:54: start X-correlation... INFO @ Wed, 08 Dec 2021 15:45:54: end of X-cor INFO @ Wed, 08 Dec 2021 15:45:54: #2 finished! INFO @ Wed, 08 Dec 2021 15:45:54: #2 predicted fragment length is 120 bps INFO @ Wed, 08 Dec 2021 15:45:54: #2 alternative fragment length(s) may be 2,101,120,133 bps INFO @ Wed, 08 Dec 2021 15:45:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.20_model.r INFO @ Wed, 08 Dec 2021 15:45:54: #3 Call peaks... INFO @ Wed, 08 Dec 2021 15:45:54: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 15:46:00: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 15:46:16: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.10_peaks.xls INFO @ Wed, 08 Dec 2021 15:46:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.10_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 15:46:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.10_summits.bed INFO @ Wed, 08 Dec 2021 15:46:16: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (1130 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 15:46:29: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 15:46:45: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.20_peaks.xls INFO @ Wed, 08 Dec 2021 15:46:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.20_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 15:46:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX10342576/SRX10342576.20_summits.bed INFO @ Wed, 08 Dec 2021 15:46:45: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (582 records, 4 fields): 1 millis CompletedMACS2peakCalling