BodyParts3D Release Note (Release 4.0, 2013/5/16)
What is new in 4.0
Coordinates
- Skeletal system has altered to accommodate big internal organs in the torso.
- Many of the existing parts have been shifted accordingly.
Concept Representation
- Conventional tree is no longer avilable.
- COMPOUND data based on FMA (Foundational Model of Anatomy by University of Washington School of Medicine) is_a and part_of tree are continuously available.
Additional Concepts
- Segmented Lung and liver with vessels were added. They may include some confusion in concept mapping yet.
- Brain artery is added.
- Arteries and veins for systemic circulation was added.
- Internal Eye ball structure and appendages were added.
- Pharynx and Larynx parts were added.
File Names
- Up to 3.0 each polygon file has file name representing its concept.
- To avoid confusion of Concept, file name, and their relation, file name was changed to unique ID ex.FJxxxx.
- The relationship with polygon file and its represented concept was given as a table.
Attentions in use
The data may still contain many ERRORS to be used as CANONICAL MODEL with all the COMMON FEATURE of human body.
Stats
| V2.0 | FMA concepts | ELEMENTAL representation | COMPOUND representation |
| is-a tree | 80457 | 843 | 643 |
| part-of tree | 35597 | 408 | 326 |
| in both tree | 30068 | 406 | 0 |
| all unique FMA | 80457 | 845 | 969 |
| V3.0 | FMA concepts | ELEMENTAL representation | COMPOUND representation |
| is-a tree | 80457 | 912 | 700 |
| part-of tree | 35597 | 436 | 353 |
| in both tree | 30068 | 433 | 0 |
| all unique FMA | 80457 | 915 | 1053 |
| V4.0 | FMA concepts | ELEMENTAL representation | COMPOUND representation |
| is-a tree | 80457 | 1651 | 1254 |
| part-of tree | 35597 | 765 | 603 |
| in both tree | 30068 | 764 | 3 |
| all unique FMA | 80457 | 1652 | 1854 |
Coordinate system of BodyParts3D
Release history
- Release 4.0: 2013/5/16
- Release 3.0: 2011/6/20
- Release 2.0: 2010/4/28
- Release 1.0: 2009/2/9
References
1. Nieuwenhuys R, Voogd J, Huijzen, CV: The Human Central Nervous System 4th edition: Springer; 2008.
2. Mai JK, Paxinos G, Voss T: Atlas of the Human Brain, Third Edition: Academic Press; 2007.
3. Standring S: Gray's Anatomy: The Anatomical Basis of Clinical Practice, Expert Consult 40th edition: Churchill Livingstone; 2008.
4. Schunke M, Schulte E, Schumacher, Udo: Prometheus Kopf, Hals und Neuroanatomie: Thieme; 2009.
5. SPL-PNL Brain Atlas 2008 March,
http://www.spl.harvard.edu/publications/item/view/1265.
6. Talairach Label Data,
http://www.talairach.org/.
7. Rosse C, Mejino JLV: A reference ontology for biomedical informatics: the Foundational Model of Anatomy. Journal of Biomedical Informatics 2003, 36(6):478-500.
8. Foundational Model of Anatomy (subset),
http://www.obofoundry.org/cgi-bin/detail.cgi?id=fma_lite
9. Latest Anatomical Terms,
http://web.sc.itc.keio.ac.jp/anatomy/TA/TA-contents.html; 2007.
10. The Japanese Association of Anatomists: Terminologia Anatomica Japonica, 13th Edition: Igaku-shoin; 2007.