AT Atlas

2013/12/16

HTTPS Site: https://dbarchive.biosciencedbc.jp/data/at_atlas/

The database of graphical descriptions of techniques developed in the Targeted Proteins Research Program.

README Content

  1. Database Component
  2. Data Description
  3. License
  4. Update History
  5. Literature
  6. Contact address

1. Database Component

  1. README
  2. Main
  3. Protein
  4. PREIMS
  5. Graphical abstract
  6. Image File
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2. Data Description

2.1 README

Data name README
Description of data contents HTML file to describe "AT Atlas" data.
File README_e.html(English)
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2.2 Main

Data name Main
Description of data contents It is a summary table of achievements in the Technology Development projects of the Targeted Proteins Research Program (TPRP); details of the developed technology, reference information etc.
File at_atlas_en.zip (3.75 KB)
Data items are the following:
Data itemDescription
ID ID of the subject (There are one to six technological subjects in a project.)
Project ID ID of the project
Subject Subject in the project
Project Theme Theme of the project
Principal Investigator Principal Investigator of the project
Affiliation Affiliation of the project
Backgrounds Backgrounds of the subject
Highlights Highlights of the subject
Outline Outline of the protocol
Application Project ID (in TPRP) that carried out using the protocol
Article Related paper (In the cases of multiple items, they are arranged in the same order as PubMed ID.)
PubMed ID PubMed ID (In the cases of multiple items, they are arranged in the same order as Article.)
CSML File Name of the diagram data (CMSL file) (Linked to the diagram data in the Simple Search site.)
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2.3 Protein

Data name Protein
Description of data contents It is a table of proteins whose structures were solved using method(s) developed in the Technology Development projects of the Targeted Proteins Research Program (TPRP).
File at_atlas_protein.zip (1.13 KB)
Data items are the following:
Data itemDescription
Project ID Project ID
PDB ID PDB ID in PDBj
Protein Name Name of the protein
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2.4 PREIMS

Data name PREIMS
Description of data contents It is a table of protocols that were developed in the Technology Development projects of the Targeted Proteins Research Program (TPRP).
File at_atlas_preims.zip (5.09 KB)
Data items are the following:
Data itemDescription
Project ID Project ID
Protocol ID Protocol ID in PREIMS (PRotein Experimental Information Management Sysmtem)
Protocol Name Name of the protocol
Category Category of the protocol
Author Author of the protocol
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2.5 Graphical abstract

Data name Graphical abstract
Description of data contents Graphical abstracts (flow chart) in the Technology Development projects of the Targeted Proteins Research Program (TPRP), which is drawn by use of Cell Illustrator. The graphics are in CSML format. One project includes one to six subject(s), and there is a CSML file for every subject.
File at_atlas_csml.zip (1.22 MB)
About CSML format file
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2.6 Image File

Data name Image File
Description of data contents Graphical abstracts (in PNG format) for the Technology Development projects of the Targeted Proteins Research Program (TPRP). One project includes one to six subject(s), and there is a PNG file originally drawn by Cell Illustrator for every subject.
File at_atlas_png.zip (5.37 MB)
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3. License

Last updated : 2013/11/19

You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.

 

Creative Commons License

The license for this database is specified in the Creative Commons Attribution-Share Alike 2.1 Japan.
If you use data from this database, please be sure attribute this database as follows: "AT Atlas © Targeted Proteins Research Program licensed under CC Attribution-Share Alike 2.1 Japan".

The summary of the Creative Commons Attribution-Share Alike 2.1 Japan is found here.

With regard to this database, you are licensed to:

  1. freely access part or whole of this database, and acquire data;
  2. freely redistribute part or whole of the data from this database; and
  3. freely create and distribute database and other derivative works based on part or whole of the data from this database,

under the license, as long as you comply with the following conditions:

  1. You must attribute this database in the manner specified by the author or licensor when distributing part or whole of this database or any derivative work.
  2. You must distribute any derivative work based on part or whole of the data from this database under the license.
  3. You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the license.

Yata 1111, Mishima, Shizuoka 411-8540, JAPAN
Platform for Drug Discovery, Informatics, and Structural Life Science
Research Organization of Information and Systems
National Institute of Genetics
E-mail: p4d-info[at]nig[dot]ac[dot]jp

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4. Update History

DateUpdate contents
2013/12/16 The email address in the contact information is corrected.
2013/11/19 AT Atlas English archive site is opened.
2011/08 AT Atlas (http://www.tanpaku.org/atatlas/) is opened.
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5. Literature

-

6. Contact address

When you have any question about "AT Atlas", contact the following:

Yata 1111, Mishima, Shizuoka 411-8540, JAPAN
Platform for Drug Discovery, Informatics, and Structural Life Science
Research Organization of Information and Systems
National Institute of Genetics
Hideaki Sugawara
E-mail: p4d-info[at]nig[dot]ac[dot]jp

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