The Rice Growth Monitoring for The Phenotypic Functional Analysis
2014/10/20Web Site: http://www.gs.dna.affrc.go.jp/SY-1108/
HTTPS Site: https://dbarchive.biosciencedbc.jp/data/agritogo-rice-phenome/
Database of phenotype analysis of rice by the system capable of imaging growth from germination to flowering.
README Content
1. Database Component
- README
- The list of strains and growth conditions
- The list of growth image files
- Graph of growth data
- The rice growth image files
- Explanation of the project
2. Data Description
2.1 README
| Data name | README |
| Description of data contents | HTML file to describe "The Rice Growth Monitoring for The Phenotypic Functional Analysis" data. |
| File | README_e.html(English) |
2.2 The list of strains and growth conditions
| Data name | The list of strains and growth conditions |
| Description of data contents | The list of strains and growth conditions for respective samples. |
| File | phenome_data.zip (1 KB) |
Data items are the following:
| Data item | Description |
|---|---|
| ID | ID of the test |
| Type | Type of the measuring instrument |
| Species | Species (Oryza sativa) |
| Material | Strain |
| Light condition | Light condition |
| Temperature | Temperature |
| Humidity | Humidity |
| Medium | Medium |
| Growth Chamber | Growth Chamber |
| Soil | Soil |
| Imaging system | Imaging system |
| Camera | Camera |
| Induction of germination / Period | Period of imaging (for ID=1) or start time of germination induction and imaging (for other entries) |
| Duration of observation | Duration of observation |
| Intervals of imaging | Intervals of imaging |
| Growth data | Graph of chronological changes in growth |
| Image list | Name list of images |
| Large image | The zip file of the images (Large image) |
| Small image | The zip file of the images (Small image) |
| First image | First image (only Simple search site) |
| Last image | Last image (only Simple search site) |
2.3 The list of growth image files
| Data name | The list of growth image files |
| Description of data contents | The list of growth image files for each samples. |
| File | images_list.zip (16 KB) |
2.4 Graph of growth data
| Data name | Graph of growth data |
| Description of data contents | The graph of chronological changes in root, coleoptile, the first leaf, and the second leaf. |
| File | growth_data_graph.zip (36 KB) |
2.5 The rice growth image files
| Data name | The rice growth image files |
| Description of data contents | The rice growth image files categorized based on file size. |
| File | image files (directory) (233 MB) |
2.6 Explanation of the project
| Data name | Explanation of the project |
| Description of data contents | The data consist of static web pages, which are able to be accessed from the top page of the web site. These pages explain the project. |
| File | phenome_outline.zip (377 KB) |
3. License
You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.
The license for this database is specified in the Creative Commons Attribution-Share Alike 2.1 Japan.
If you use data from this database, please be sure attribute this database as follows: "The Rice Growth Monitoring for the Phenotypic Functional Analysis © Central Research Laboratory, Hitachi, Ltd. licensed under CC Attribution-Share Alike 2.1 Japan".
The summary of the Creative Commons Attribution-Share Alike 2.1 Japan is found here.
With regard to this database, you are licensed to:
- freely access part or whole of this database, and acquire data;
- freely redistribute part or whole of the data from this database; and
- freely create and distribute database and other derivative works based on part or whole of the data from this database,
under the license, as long as you comply with the following conditions:
- You must attribute this database in the manner specified by the author or licensor when distributing part or whole of this database or any derivative work.
- You must distribute any derivative work based on part or whole of the data from this database under the license.
- You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the license.
Contact information about the use license:
Please contact in two places of the following.
1-1 Toyosatodai, Utsunomiya-shi, Tochigi 320-8551, Japan
Department of Biosciences, Faculty of Science and Engineering, Teikyo University
Tomoko Shinomura
E-mail: shinomura[at]nasu[dot]bio[dot]teikyo-u[dot]ac[dot]jp
1-280 Higashi-Koigakubo, Kokubunji-shi, Tokyo 185-0014, Japan
Central Research Laboratory, Hitachi, Ltd.
Shigeo Goto
E-mail: shigeo[dot]goto[dot]gk[at]hitachi[dot]com
4. Update History
| Date | Update contents |
|---|---|
| 2014/10/20 | The URLs of the database maintenance site and the portal site are changed. |
| 2014/02/10 | The Rice Growth Monitoring for The Phenotypic Functional Analysis English archive site is opened. |
| 2003/10/01 | The Rice Growth Monitoring System for the Phenotypic Functional Analysis (http://www.gs.dna.affrc.go.jp/SY-1108/) is opened. |
5. Literature
Kinetic measuring method of rice growth in tillering stage using automatic digital imaging system.Ishizuka, T., Tanabata, T., Takano, M., Shinomura, T.
Environ. Control in Biol./2005/43:83-96.
6. Contact address
When you have any question about "The Rice Growth Monitoring for The Phenotypic Functional Analysis", contact the following:
1-1, Toyosatodai, Utsunomiya-shi, Tochigi 320-8551 Japan
Department of Biosciences, Faculty of Science and Engineering, Teikyo University
Tomoko Shinomura
E-mail: shinomura[at]nasu[dot]bio[dot]teikyo-u[dot]ac[dot]jp