Yazaki J, Kojima K, Suzuki K, Kishimoto N, Kikuchi S. The Rice PIPELINE: a unification tool for plant functional genomics. Nucleic Acids Res. 2004 Jan 1;32 Database issue:D383-7. [PubMed]
Yazaki J, Kishimoto N, Nagata Y, Ishikawa M, Fujii F, Hashimoto A, Shimbo K, Shimatani Z, Kojima K, Suzuki K, Yamamoto M,Honda S, Endo A, Yoshida Y, Sato Y, Takeuchi K, Toyoshima K, Miyamoto C, Wu J, Sasaki T, Sakata K, Yamamoto K, Iba K, Oda T,Otomo Y, Murakami K, Matsubara M, Kawai J, Carninci P, Hayashizaki Y, Kikuchi S. Genomics Approach to Abscisic Acid- and Gibberellin-responsive Genes in Rice. DNA RESEARCH 10, 6, pp. 249 - 261 (2003) [PubMed] [HTML, PDF] Supplemental table 6.pdf Supplemental table 7.pdf
Akimoto-Tomiyama,C., Sakata,K.,Yazaki,J., Nakamura,K., Fujii,F., Shimbo,K., Yamamoto,K., Sasaki,T., Kishimoto,N., Kikuchi,S., Shibuya,N. & Minami,E. {2003) Rice Gene Expression in Response to N-acetylchitooligosaccharide elicitor: Comprehensive Analysis by DNA Microarray with Randomly Selected ESTs. Plant Mol.Biol. 52: 537-551 [HTML, PDF]
Wasaki, J., Yonetani, R., Kuroda, S., Shinano, T., Yazaki, J., Fujii, F., Shimbo, K., Yamamoto, K., Sakata, K., Sasaki, T., Kishimoto, N., Kikuchi, S., Yamagishi, M., and Osaki, M. Transcriptomic analysis of metabolic changes by phosphorus stress in rice plant roots. Plant Cell and Environment, 2003 26, 1515-1523 [Abstract][HTML, PDF]
Otsuki S, Ikeda A, Sunako T, Muto S, Yazaki J, Nakamura K, Fujii F, Shimbo K, Otsuka Y, Yamamoto K, Sakata K, Sasaki T, Kishimoto N, Kikuchi S, Yamaguchi J. Novel gene encoding a Ca2+-binding protein and under hexokinase-dependent sugar regulation. Biosci Biotechnol Biochem. 2003 Feb;67(2):347-53.
[Abstract] [HTML, PDF]
Shimono M, Yazaki J, Nakamura K, Kishimoto N, Kikuchi S, Iwano M, Yomamoto K, Sakata K, Sakata T, Nishiguchi M. cDNA microarray analysis of gene expression in rice plants treated with probenazole, a chemical inducer of disease resistance. J Gen Plant Pathol (2003) 69 [HTML, PDF]
Yazaki J, Kishimoto N, Ishikawa M, Kikuchi S . The Rice Expression Database (RED): gateway to rice functional genomics. Trends in Plant Science (2002) Dec 7 (12):563-564 [Abstract][HTML, PDF]
Shoshi Kikuchi Rice Microarray Project in Japan. Asian Pacific Biotech (2002) Vol. 6 No.24
Demura T, Tashiro G, Horiguchi G, Kishimoto N, Kubo M, Matsuoka N, Minami A, Nagata-Hiwatashi M, Nakamura K, Okamura Y, Sassa N, Suzuki S, Yazaki J, Kikuchi S, Fukuda H. Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells. Proc Natl Acad Sci U S A (2002) Nov 26;99(24):15794-15799 [Abstract]
Yazaki J, Kishimoto N, MicroArray Center, Kikuchi S Rice functional genomics via cDNA microarray (1) (in Japanese) Journal of Agricultural Science (Nougyou gijutsu) (2002) Nov 57 (11): 507-511
Yazaki J, Kishimoto N, MicroArray Center, Kikuchi S Rice functional genomics via cDNA microarray (2) (in Japanese) Journal of Agricultural Science (Nougyou gijutu) (2002) Dec 57 (12): 544-548
Day R, Akimoto TC, Yazaki J, Nakamura K, Fujii F, Shimbo K, Yamamoto K, Sakata K,Sasaki T, Kishimoto N, Kikuchi S, Shibuya N, Minami E. Large-scale identification of elicitor-responsive genes in suspension-cultured rice cells by DNA microarray. Plant Biotechnology (2002) 19(2):153-155
Kishimoto N, Yazaki J, Fujii F, Shimbo K, Ohta T, Shimatani Z, Nagata Y, Hashimoto A, and Kikuchi S. Rice cDNA microarray: a powerful tool for transcriptome analysis in rice functional genomics. Recent Research Developments in Plant Biology., (2002) 2: 49-59
Negishi T, Nakanishi H, Yazaki J, Kishimoto N, Fujii F, Shimbo K, Yamamoto K, Sakata K, Sasaki T, Kikuchi S, Mori S, Nishizawa NK. cDNA microarray analysis of gene expression during Fe-deficiency stress in barley suggests that polar transport of vesicles is implicated in phytosiderophore secretion in Fe-deficient barley roots. Plant J (2002) Apr;30(1):83-94 [Abstract]
Shoshi Kikuchi Establishment of the system for analysis of global gene expression in plants using microarray technology (2001) (in Japanese) Breeding Research (Ikushugaku Kenkyu) 3 (2): 95-101
Shoshi Kikuchi Microarray Analysis for Plat Gene Expression (2000) (in Japanese) Journal of Agricultural Science (Nougyou gijutsu) 55 (5): 15-20 cDNA
Shoshi Kikuchi Use of and Outlook for Microarray Technology (2000) (in Japanese) Techno Innovation 9 (1) No33: 21-25
Domon,E., Kishimoto,N., Kikuchi,S., Yazaki,J., Sasaki,T., Sakata,K., Yamamoto,K. Saito,A. (2000) Application of Principal Component Analysis to Gene Expression Profiling by cDNA Microarray in Rice Seminal Root under Low pH Condition (in Japanese) Breeding Research (Ikushugaku Kenkyu) 2: 189-195
Yazaki J, Kishimoto N, Fujii F, Nakamura K, Wu J, K, Yamamoto K, Sakata K, Sasaki T, Kikuchi S. Rice functional genomics via cDNA microarray analysis, Rice genetics IV, in press (2000)
Yazaki J, Kishimoto N, Nakamura K, Fujii F, Shimbo K, Otsuka Y, Wu J, Yamamoto K, Sakata K, Sasaki T, Kikuchi S. Embarking on rice functional genomics via cDNA microarray: use of 3' UTR probes for specific gene expression analysis. DNA Res (2000) Dec 31;7(6):367-70 [HTML, PDF]
