Job ID = 12597250
SRX = SRX3236115
Genome = sacCer3
Started at	210422_15:38:12

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 8268426 spots for SRR6123462/SRR6123462.sra
Written 8268426 spots for SRR6123462/SRR6123462.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 793383366 Apr 22 15:38 SRR6123462.fastq.gz
Start BMap mapping with following parameters
 species                :S_cerevisiae
 revision               :sacCer3
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX3236115.sum.gz
 output alignment file  :SRX3236115.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 125 ms)
 -FM-Index for g2a genome.... finished (elapsed: 252 ms)
 -suffix array for c2t genome.... finished (elapsed: 377 ms)
 -suffix array for g2a genome.... finished (elapsed: 496 ms)
 -reference sequence.... finished (elapsed: 504 ms)
Index loading finished.
File(s) loaded: SRR6123462.fastq.gz.
Time elapsed:160499 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 611142357 Apr 22 15:41 SRX3236115.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  91160571 Apr 22 15:41 SRX3236115.sum.gz
SRX3236115.sum.gz was set to analysis list.
Analyzing SRX3236115.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku      5053 Apr 22 15:42 SRX3236115.mapsum.html
Processing "SRX3236115.bisulalign.gz" (611142357 bytes)
********************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku  97645775 Apr 22 15:43 SRX3236115.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku    85801 Apr 22 15:43 SRX3236115.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/S_cerevisiae/sacCer3/S_cerevisiae_sacCer3.binseq
GraphFile               :SRX3236115.graph
Output File (methyl)    :SRX3236115.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX3236115.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX3236115.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku  3560302 Apr 22 15:43 SRX3236115.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku  3169329 Apr 22 15:43 SRX3236115.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku  3237784 Apr 22 15:43 SRX3236115.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
/var/spool/uge/at156/job_scripts/12597250: line 241: 74463 Segmentation fault      (core dumped) ~/chipatlas/bin/pmd -o ${EXPERIMENT}.pmd ${EXPERIMENT}.cpg.methpipe.sorted.tab
コアダンプのため強制停止。
okishinya has registered the job 12597250 for deletion