Job ID = 12597252
SRX = SRX3236109
Genome = sacCer3
Started at	210422_15:38:12

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 9273380 spots for SRR6123456/SRR6123456.sra
Written 9273380 spots for SRR6123456/SRR6123456.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 890024305 Apr 22 15:39 SRR6123456.fastq.gz
Start BMap mapping with following parameters
 species                :S_cerevisiae
 revision               :sacCer3
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX3236109.sum.gz
 output alignment file  :SRX3236109.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 154 ms)
 -FM-Index for g2a genome.... finished (elapsed: 303 ms)
 -suffix array for c2t genome.... finished (elapsed: 355 ms)
 -suffix array for g2a genome.... finished (elapsed: 407 ms)
 -reference sequence.... finished (elapsed: 409 ms)
Index loading finished.
File(s) loaded: SRR6123456.fastq.gz.
Time elapsed:264223 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 686598115 Apr 22 15:44 SRX3236109.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 102582189 Apr 22 15:44 SRX3236109.sum.gz
SRX3236109.sum.gz was set to analysis list.
Analyzing SRX3236109.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku      5052 Apr 22 15:45 SRX3236109.mapsum.html
Processing "SRX3236109.bisulalign.gz" (686598115 bytes)
******: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku  97645775 Apr 22 15:45 SRX3236109.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku    91331 Apr 22 15:46 SRX3236109.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/S_cerevisiae/sacCer3/S_cerevisiae_sacCer3.binseq
GraphFile               :SRX3236109.graph
Output File (methyl)    :SRX3236109.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX3236109.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX3236109.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku  3587201 Apr 22 15:46 SRX3236109.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku  3211147 Apr 22 15:46 SRX3236109.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku  3260342 Apr 22 15:46 SRX3236109.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
/var/spool/uge/at088/job_scripts/12597252: line 241:  4957 Segmentation fault      (core dumped) ~/chipatlas/bin/pmd -o ${EXPERIMENT}.pmd ${EXPERIMENT}.cpg.methpipe.sorted.tab
コアダンプのため強制停止。
okishinya has registered the job 12597252 for deletion