Job ID = 12597281
SRX = ERX4244108
Genome = sacCer3
Started at	210422_15:45:24

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 17691776 spots for ERR4292363/ERR4292363.sra
Written 17691776 spots for ERR4292363/ERR4292363.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1531615824 Apr 22 15:48 ERR4292363_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 1437445687 Apr 22 15:48 ERR4292363_2.fastq.gz
Start BMap mapping with following parameters
 species                :S_cerevisiae
 revision               :sacCer3
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX4244108.sum.gz
 output alignment file  :ERX4244108.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 152 ms)
 -FM-Index for g2a genome.... finished (elapsed: 304 ms)
 -suffix array for c2t genome.... finished (elapsed: 380 ms)
 -suffix array for g2a genome.... finished (elapsed: 454 ms)
 -reference sequence.... finished (elapsed: 457 ms)
Index loading finished.
File(s) loaded: ERR4292363_1.fastq.gz, ERR4292363_2.fastq.gz.
Time elapsed:850219 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 2056308862 Apr 22 16:05 ERX4244108.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  312146506 Apr 22 16:05 ERX4244108.sum.gz
ERX4244108.sum.gz was set to analysis list.
Analyzing ERX4244108.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5977 Apr 22 16:09 ERX4244108.mapsum.html
Processing "ERX4244108.bisulalign.gz" (2056308862 bytes)
*************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku   97645775 Apr 22 16:10 ERX4244108.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku   205156 Apr 22 16:10 ERX4244108.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/S_cerevisiae/sacCer3/S_cerevisiae_sacCer3.binseq
GraphFile               :ERX4244108.graph
Output File (methyl)    :ERX4244108.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX4244108.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX4244108.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku  3863461 Apr 22 16:10 ERX4244108.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku  3403004 Apr 22 16:10 ERX4244108.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku  3280105 Apr 22 16:10 ERX4244108.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
/var/spool/uge/at087/job_scripts/12597281: line 241: 37369 Segmentation fault      (core dumped) ~/chipatlas/bin/pmd -o ${EXPERIMENT}.pmd ${EXPERIMENT}.cpg.methpipe.sorted.tab
コアダンプのため強制停止。
okishinya has registered the job 12597281 for deletion