Job ID = 12597289
SRX = ERX4244107
Genome = sacCer3
Started at	210422_15:46:54

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 29429920 spots for ERR4292362/ERR4292362.sra
Written 29429920 spots for ERR4292362/ERR4292362.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 1244036588 Apr 22 15:50 ERR4292362_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 1221230434 Apr 22 15:50 ERR4292362_2.fastq.gz
Start BMap mapping with following parameters
 species                :S_cerevisiae
 revision               :sacCer3
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :ERX4244107.sum.gz
 output alignment file  :ERX4244107.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 149 ms)
 -FM-Index for g2a genome.... finished (elapsed: 297 ms)
 -suffix array for c2t genome.... finished (elapsed: 344 ms)
 -suffix array for g2a genome.... finished (elapsed: 390 ms)
 -reference sequence.... finished (elapsed: 392 ms)
Index loading finished.
File(s) loaded: ERR4292362_1.fastq.gz, ERR4292362_2.fastq.gz.
Time elapsed:1185505 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 3648016147 Apr 22 16:13 ERX4244107.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  511255311 Apr 22 16:13 ERX4244107.sum.gz
ERX4244107.sum.gz was set to analysis list.
Analyzing ERX4244107.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       6070 Apr 22 16:20 ERX4244107.mapsum.html
Processing "ERX4244107.bisulalign.gz" (3648016147 bytes)
*********: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku   97645775 Apr 22 16:22 ERX4244107.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku   294258 Apr 22 16:22 ERX4244107.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/S_cerevisiae/sacCer3/S_cerevisiae_sacCer3.binseq
GraphFile               :ERX4244107.graph
Output File (methyl)    :ERX4244107.cpg.methyl.bedGraph.gz
Output File (cover)    :ERX4244107.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :ERX4244107.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku  3995119 Apr 22 16:23 ERX4244107.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku  5063091 Apr 22 16:23 ERX4244107.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku  5562296 Apr 22 16:23 ERX4244107.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    80653 Apr 22 16:24 ERX4244107.hmr
-rw-r--r-- 1 okishinya so-ddmku       14 Apr 22 16:24 ERX4244107.pmd
-rw-r--r-- 1 okishinya so-ddmku    66848 Apr 22 16:24 ERX4244107.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  5087152 Apr 22 16:24 ERX4244107.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  6045390 Apr 22 16:24 ERX4244107.cpg.methyl.bw

=-=-=num_reads	29429912
=-=-=mapping_rate_1	0.955
=-=-=mapping_rate_2	0.949
=-=-=methyl_rate_cpg_total	0.187
=-=-=methyl_rate_cpg_lambda	0.001
=-=-=low_methyl_region	3962
=-=-=partial_methyl_region	1
=-=-=high_methyl_region	3293
=-=-=coverage	131.975
=-=-=end	210422_16:24:32
=-=-=duration	.627