Job ID = 10223699 SRX = SRX8566509 Genome = rn6 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 955711 spots for SRR12036646/SRR12036646.sra Written 955711 spots for SRR12036646/SRR12036646.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:02:11 955711 reads; of these: 955711 (100.00%) were paired; of these: 122058 (12.77%) aligned concordantly 0 times 638873 (66.85%) aligned concordantly exactly 1 time 194780 (20.38%) aligned concordantly >1 times ---- 122058 pairs aligned concordantly 0 times; of these: 44287 (36.28%) aligned discordantly 1 time ---- 77771 pairs aligned 0 times concordantly or discordantly; of these: 155542 mates make up the pairs; of these: 82541 (53.07%) aligned 0 times 25382 (16.32%) aligned exactly 1 time 47619 (30.61%) aligned >1 times 95.68% overall alignment rate Time searching: 00:02:13 Overall time: 00:02:13 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_rmdup_core] processing reference chr1... [bam_rmdup_core] processing reference chr10... [bam_rmdup_core] processing reference chr10_KL568008v1_random... [bam_rmdup_core] processing reference chr10_KL568009v1_random... [bam_rmdup_core] processing reference chr10_KL568010v1_random... [bam_rmdup_core] processing reference chr10_KL568011v1_random... [bam_rmdup_core] processing reference chr10_KL568012v1_random... [bam_rmdup_core] processing reference chr10_KL568014v1_random... [bam_rmdup_core] processing reference chr10_KL568016v1_random... [bam_rmdup_core] processing reference chr10_KL568018v1_random... [bam_rmdup_core] processing reference chr11... [bam_rmdup_core] processing reference chr11_KL568019v1_random... [bam_rmdup_core] processing reference chr11_KL568021v1_random... [bam_rmdup_core] processing reference chr11_KL568025v1_random... [bam_rmdup_core] processing reference chr11_KL568026v1_random... [bam_rmdup_core] processing reference chr11_KL568029v1_random... [bam_rmdup_core] processing reference chr11_KL568030v1_random... [bam_rmdup_core] processing reference chr12... [bam_rmdup_core] processing reference chr12_KL568032v1_random... [bam_rmdup_core] processing reference chr12_KL568035v1_random... [bam_rmdup_core] processing reference chr12_KL568036v1_random... [bam_rmdup_core] processing reference chr12_KL568037v1_random... [bam_rmdup_core] processing reference chr12_KL568038v1_random... [bam_rmdup_core] processing reference chr12_KL568039v1_random... [bam_rmdup_core] processing reference chr12_KL568040v1_random... [bam_rmdup_core] processing reference chr13... [bam_rmdup_core] processing reference chr13_KL568041v1_random... [bam_rmdup_core] processing reference chr13_KL568042v1_random... [bam_rmdup_core] processing reference chr13_KL568044v1_random... [bam_rmdup_core] processing reference chr13_KL568045v1_random... [bam_rmdup_core] processing reference chr13_KL568046v1_random... [bam_rmdup_core] processing reference chr13_KL568047v1_random... [bam_rmdup_core] processing reference chr13_KL568049v1_random... [bam_rmdup_core] processing reference chr13_KL568051v1_random... [bam_rmdup_core] processing reference chr14... [bam_rmdup_core] processing reference chr14_KL568053v1_random... [bam_rmdup_core] processing reference chr14_KL568054v1_random... [bam_rmdup_core] processing reference chr14_KL568055v1_random... [bam_rmdup_core] processing reference chr14_KL568057v1_random... [bam_rmdup_core] processing reference chr14_KL568058v1_random... [bam_rmdup_core] processing reference chr14_KL568059v1_random... [bam_rmdup_core] processing reference chr15... [bam_rmdup_core] processing reference chr15_KL568062v1_random... [bam_rmdup_core] processing reference chr15_KL568063v1_random... [bam_rmdup_core] processing reference chr15_KL568064v1_random... [bam_rmdup_core] processing reference chr15_KL568065v1_random... [bam_rmdup_core] processing reference chr15_KL568066v1_random... [bam_rmdup_core] processing reference chr15_KL568067v1_random... [bam_rmdup_core] processing reference chr15_KL568068v1_random... [bam_rmdup_core] processing reference chr15_KL568070v1_random... [bam_rmdup_core] processing reference chr15_KL568072v1_random... [bam_rmdup_core] processing reference chr15_KL568073v1_random... [bam_rmdup_core] processing reference chr15_KL568074v1_random... [bam_rmdup_core] processing reference chr16... [bam_rmdup_core] processing reference chr16_KL568075v1_random... [bam_rmdup_core] processing reference chr16_KL568076v1_random... [bam_rmdup_core] processing reference chr16_KL568077v1_random... [bam_rmdup_core] processing reference chr16_KL568078v1_random... [bam_rmdup_core] processing reference chr16_KL568079v1_random... [bam_rmdup_core] processing reference chr16_KL568080v1_random... [bam_rmdup_core] processing reference chr16_KL568081v1_random... [bam_rmdup_core] processing reference chr17... [bam_rmdup_core] processing reference chr17_KL568084v1_random... [bam_rmdup_core] processing reference chr17_KL568085v1_random... [bam_rmdup_core] processing reference chr17_KL568086v1_random... [bam_rmdup_core] processing reference chr17_KL568087v1_random... [bam_rmdup_core] processing reference chr17_KL568088v1_random... [bam_rmdup_core] processing reference chr17_KL568089v1_random... [bam_rmdup_core] processing reference chr17_KL568091v1_random... [bam_rmdup_core] processing reference chr17_AABR07050910v1_random... [bam_rmdup_core] processing reference chr17_AABR07050911v1_random... [bam_rmdup_core] processing reference chr17_KL568092v1_random... [bam_rmdup_core] processing reference chr18... [bam_rmdup_core] processing reference chr18_KL568094v1_random... [bam_rmdup_core] processing reference chr18_KL568095v1_random... [bam_rmdup_core] processing reference chr18_AABR07051099v1_random... [bam_rmdup_core] processing reference chr18_KL568096v1_random... [bam_rmdup_core] processing reference chr18_KL568097v1_random... [bam_rmdup_core] processing reference chr19... [bam_rmdup_core] processing reference chr19_KL568100v1_random... [bam_rmdup_core] processing reference chr19_KL568101v1_random... [bam_rmdup_core] processing reference chr19_KL568102v1_random... [bam_rmdup_core] processing reference chr1_KL567879v1_random... [bam_rmdup_core] processing reference chr1_KL567880v1_random... [bam_rmdup_core] processing reference chr1_AABR07046187v1_random... [bam_rmdup_core] processing reference chr1_KL567881v1_random... [bam_rmdup_core] processing reference chr1_KL567882v1_random... [bam_rmdup_core] processing reference chr1_KL567883v1_random... [bam_rmdup_core] processing reference chr1_KL567884v1_random... [bam_rmdup_core] processing reference chr1_KL567885v1_random... [bam_rmdup_core] processing reference chr1_KL567886v1_random... [bam_rmdup_core] processing reference chr1_AABR07046222v1_random... [bam_rmdup_core] processing reference chr1_AABR07046230v1_random... [bam_rmdup_core] processing reference chr1_AABR07046231v1_random... [bam_rmdup_core] processing reference chr1_KL567889v1_random... [bam_rmdup_core] processing reference chr1_KL567891v1_random... [bam_rmdup_core] processing reference chr1_AABR07046150v1_random... [bam_rmdup_core] processing reference chr1_KL567892v1_random... [bam_rmdup_core] processing reference chr1_KL567893v1_random... [bam_rmdup_core] processing reference chr1_KL567894v1_random... [bam_rmdup_core] processing reference chr1_KL567895v1_random... [bam_rmdup_core] processing reference chr2... [bam_rmdup_core] processing reference chr20... [bam_rmdup_core] processing reference chr20_AABR07055056v1_random... [bam_rmdup_core] processing reference chr20_KL568103v1_random... [bam_rmdup_core] processing reference chr20_KL568106v1_random... [bam_rmdup_core] processing reference chr20_KL568108v1_random... [bam_rmdup_core] processing reference chr20_KL568109v1_random... [bam_rmdup_core] processing reference chr2_KL567897v1_random... [bam_rmdup_core] processing reference chr2_KL567898v1_random... [bam_rmdup_core] processing reference chr2_KL567899v1_random... [bam_rmdup_core] processing reference chr2_KL567900v1_random... [bam_rmdup_core] processing reference chr2_KL567901v1_random... [bam_rmdup_core] processing reference chr2_AABR07045975v1_random... [bam_rmdup_core] processing reference chr2_KL567902v1_random... [bam_rmdup_core] processing reference chr2_KL567903v1_random... [bam_rmdup_core] processing reference chr2_KL567905v1_random... [bam_rmdup_core] processing reference chr2_KL567906v1_random... [bam_rmdup_core] processing reference chr2_KL567907v1_random... [bam_rmdup_core] processing reference chr2_KL567908v1_random... [bam_rmdup_core] processing reference chr2_KL567910v1_random... [bam_rmdup_core] processing reference chr2_KL567911v1_random... [bam_rmdup_core] processing reference chr2_KL567912v1_random... [bam_rmdup_core] processing reference chr2_KL567913v1_random... [bam_rmdup_core] processing reference chr2_KL567914v1_random... [bam_rmdup_core] processing reference chr2_KL567915v1_random... [bam_rmdup_core] processing reference chr3... [bam_rmdup_core] processing reference chr3_KL567917v1_random... [bam_rmdup_core] processing reference chr3_KL567919v1_random... [bam_rmdup_core] processing reference chr3_AABR07046296v1_random... [bam_rmdup_core] processing reference chr3_KL567921v1_random... [bam_rmdup_core] processing reference chr3_KL567924v1_random... [bam_rmdup_core] processing reference chr3_AABR07046319v1_random... [bam_rmdup_core] processing reference chr3_KL567926v1_random... [bam_rmdup_core] processing reference chr3_KL567927v1_random... [bam_rmdup_core] processing reference chr3_KL567930v1_random... [bam_rmdup_core] processing reference chr3_KL567931v1_random... [bam_rmdup_core] processing reference chr3_KL567932v1_random... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chr4_KL567933v1_random... [bam_rmdup_core] processing reference chr4_KL567935v1_random... [bam_rmdup_core] processing reference chr4_KL567936v1_random... [bam_rmdup_core] processing reference chr4_KL567937v1_random... [bam_rmdup_core] processing reference chr4_KL567938v1_random... [bam_rmdup_core] processing reference chr4_KL567939v1_random... [bam_rmdup_core] processing reference chr4_KL567940v1_random... [bam_rmdup_core] processing reference chr4_KL567941v1_random... [bam_rmdup_core] processing reference chr4_KL567943v1_random... [bam_rmdup_core] processing reference chr4_KL567944v1_random... [bam_rmdup_core] processing reference chr4_KL567945v1_random... [bam_rmdup_core] processing reference chr4_KL567946v1_random... [bam_rmdup_core] processing reference chr4_KL567947v1_random... [bam_rmdup_core] processing reference chr5... [bam_rmdup_core] processing reference chr5_KL567948v1_random... [bam_rmdup_core] processing reference chr5_KL567949v1_random... [bam_rmdup_core] processing reference chr5_KL567950v1_random... [bam_rmdup_core] processing reference chr5_KL567951v1_random... [bam_rmdup_core] processing reference chr5_KL567952v1_random... [bam_rmdup_core] processing reference chr5_KL567953v1_random... [bam_rmdup_core] processing reference chr5_KL567954v1_random... [bam_rmdup_core] processing reference chr5_KL567957v1_random... [bam_rmdup_core] processing reference chr5_KL567958v1_random... [bam_rmdup_core] processing reference chr5_KL567959v1_random... [bam_rmdup_core] processing reference chr5_KL567960v1_random... [bam_rmdup_core] processing reference chr5_KL567961v1_random... [bam_rmdup_core] processing reference chr6... [bam_rmdup_core] processing reference chr6_KL567965v1_random... [bam_rmdup_core] processing reference chr6_KL567966v1_random... [bam_rmdup_core] processing reference chr6_KL567967v1_random... [bam_rmdup_core] processing reference chr6_KL567968v1_random... [bam_rmdup_core] processing reference chr6_KL567969v1_random... [bam_rmdup_core] processing reference chr6_KL567970v1_random... [bam_rmdup_core] processing reference chr6_KL567971v1_random... [bam_rmdup_core] processing reference chr6_KL567972v1_random... [bam_rmdup_core] processing reference chr7... [bam_rmdup_core] processing reference chr7_KL567975v1_random... [bam_rmdup_core] processing reference chr7_KL567976v1_random... [bam_rmdup_core] processing reference chr7_KL567981v1_random... [bam_rmdup_core] processing reference chr7_KL567982v1_random... [bam_rmdup_core] processing reference chr7_KL567983v1_random... [bam_rmdup_core] processing reference chr7_KL567984v1_random... [bam_rmdup_core] processing reference chr7_KL567986v1_random... [bam_rmdup_core] processing reference chr7_AABR07046136v1_random... [bam_rmdup_core] processing reference chr7_KL567988v1_random... [bam_rmdup_core] processing reference chr7_KL567994v1_random... [bam_rmdup_core] processing reference chr8... [bam_rmdup_core] processing reference chr8_KL567995v1_random... [bam_rmdup_core] processing reference chr8_AABR07050661v1_random... [bam_rmdup_core] processing reference chr8_KL567997v1_random... [bam_rmdup_core] processing reference chr8_KL567998v1_random... [bam_rmdup_core] processing reference chr8_KL567999v1_random... [bam_rmdup_core] processing reference chr8_KL568000v1_random... [bam_rmdup_core] processing reference chr8_KL568001v1_random... [bam_rmdup_core] processing reference chr9... [bam_rmdup_core] processing reference chr9_KL568003v1_random... [bam_rmdup_core] processing reference chr9_AABR07051155v1_random... [bam_rmdup_core] processing reference chr9_KL568005v1_random... [bam_rmdup_core] processing reference chr9_KL568007v1_random... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrUn_KL568169v1... [bam_rmdup_core] processing reference chrUn_KL568170v1... [bam_rmdup_core] processing reference chrUn_KL568172v1... [bam_rmdup_core] processing reference chrUn_KL568176v1... [bam_rmdup_core] processing reference chrUn_KL568177v1... [bam_rmdup_core] processing reference chrUn_AABR07022511v1... [bam_rmdup_core] processing reference chrUn_KL568185v1... [bam_rmdup_core] processing reference chrUn_KL568187v1... [bam_rmdup_core] processing reference chrUn_KL568190v1... [bam_rmdup_core] processing reference chrUn_KL568192v1... [bam_rmdup_core] processing reference chrUn_KL568193v1... [bam_rmdup_core] processing reference chrUn_KL568195v1... [bam_rmdup_core] processing reference chrUn_KL568197v1... [bam_rmdup_core] processing reference chrUn_AABR07022594v1... [bam_rmdup_core] processing reference chrUn_KL568198v1... [bam_rmdup_core] processing reference chrUn_KL568201v1... [bam_rmdup_core] processing reference chrUn_KL568204v1... [bam_rmdup_core] processing reference chrUn_KL568205v1... [bam_rmdup_core] processing reference chrUn_KL568214v1... [bam_rmdup_core] processing reference chrUn_KL568215v1... [bam_rmdup_core] processing reference chrUn_KL568219v1... [bam_rmdup_core] processing reference chrUn_AABR07022684v1... [bam_rmdup_core] processing reference chrUn_KL568224v1... [bam_rmdup_core] processing reference chrUn_AABR07022707v1... [bam_rmdup_core] processing reference chrUn_KL568229v1... [bam_rmdup_core] processing reference chrUn_KL568232v1... [bam_rmdup_core] processing reference chrUn_KL568234v1... [bam_rmdup_core] processing reference chrUn_KL568235v1... [bam_rmdup_core] processing reference chrUn_KL568241v1... [bam_rmdup_core] processing reference chrUn_KL568245v1... [bam_rmdup_core] processing reference chrUn_KL568247v1... [bam_rmdup_core] processing reference chrUn_KL568249v1... [bam_rmdup_core] processing reference chrUn_KL568251v1... [bam_rmdup_core] processing reference chrUn_KL568254v1... [bam_rmdup_core] processing reference chrUn_KL568257v1... [bam_rmdup_core] processing reference chrUn_KL568259v1... [bam_rmdup_core] processing reference chrUn_KL568260v1... [bam_rmdup_core] processing reference chrUn_KL568263v1... [bam_rmdup_core] processing reference chrUn_KL568267v1... [bam_rmdup_core] processing reference chrUn_KL568268v1... [bam_rmdup_core] processing reference chrUn_KL568272v1... [bam_rmdup_core] processing reference chrUn_KL568274v1... [bam_rmdup_core] processing reference chrUn_KL568281v1... [bam_rmdup_core] processing reference chrUn_KL568282v1... [bam_rmdup_core] processing reference chrUn_KL568283v1... [bam_rmdup_core] processing reference chrUn_AABR07022923v1... [bam_rmdup_core] processing reference chrUn_KL568287v1... [bam_rmdup_core] processing reference chrUn_KL568289v1... [bam_rmdup_core] processing reference chrUn_KL568292v1... [bam_rmdup_core] processing reference chrUn_KL568295v1... [bam_rmdup_core] processing reference chrUn_KL568300v1... [bam_rmdup_core] processing reference chrUn_KL568304v1... [bam_rmdup_core] processing reference chrUn_KL568307v1... [bam_rmdup_core] processing reference chrUn_KL568308v1... [bam_rmdup_core] processing reference chrUn_KL568309v1... [bam_rmdup_core] processing reference chrUn_KL568310v1... [bam_rmdup_core] processing reference chrUn_KL568312v1... [bam_rmdup_core] processing reference chrUn_KL568313v1... [bam_rmdup_core] processing reference chrUn_KL568314v1... [bam_rmdup_core] processing reference chrUn_KL568315v1... [bam_rmdup_core] processing reference chrUn_KL568316v1... [bam_rmdup_core] processing reference chrUn_KL568317v1... [bam_rmdup_core] processing reference chrUn_KL568318v1... [bam_rmdup_core] processing reference chrUn_KL568319v1... [bam_rmdup_core] processing reference chrUn_KL568320v1... [bam_rmdup_core] processing reference chrUn_KL568321v1... [bam_rmdup_core] processing reference chrUn_AABR07023168v1... [bam_rmdup_core] processing reference chrUn_KL568323v1... [bam_rmdup_core] processing reference chrUn_KL568324v1... [bam_rmdup_core] processing reference chrUn_KL568325v1... [bam_rmdup_core] processing reference chrUn_KL568327v1... [bam_rmdup_core] processing reference chrUn_KL568328v1... [bam_rmdup_core] processing reference chrUn_KL568331v1... [bam_rmdup_core] processing reference chrUn_KL568334v1... [bam_rmdup_core] processing reference chrUn_KL568336v1... [bam_rmdup_core] processing reference chrUn_KL568337v1... [bam_rmdup_core] processing reference chrUn_KL568340v1... [bam_rmdup_core] processing reference chrUn_KL568342v1... [bam_rmdup_core] processing reference chrUn_KL568343v1... [bam_rmdup_core] processing reference chrUn_KL568344v1... [bam_rmdup_core] processing reference chrUn_KL568345v1... [bam_rmdup_core] processing reference chrUn_KL568346v1... [bam_rmdup_core] processing reference chrUn_KL568352v1... [bam_rmdup_core] processing reference chrUn_AABR07022300v1... [bam_rmdup_core] processing reference chrUn_KL568353v1... [bam_rmdup_core] processing reference chrUn_KL568354v1... [bam_rmdup_core] processing reference chrUn_KL568355v1... [bam_rmdup_core] processing reference chrUn_KL568356v1... [bam_rmdup_core] processing reference chrUn_KL568359v1... [bam_rmdup_core] processing reference chrUn_KL568360v1... [bam_rmdup_core] processing reference chrUn_KL568362v1... [bam_rmdup_core] processing reference chrUn_KL568364v1... [bam_rmdup_core] processing reference chrUn_KL568365v1... [bam_rmdup_core] processing reference chrUn_KL568366v1... [bam_rmdup_core] processing reference chrUn_KL568367v1... [bam_rmdup_core] processing reference chrUn_KL568370v1... [bam_rmdup_core] processing reference chrUn_KL568373v1... [bam_rmdup_core] processing reference chrUn_KL568374v1... [bam_rmdup_core] processing reference chrUn_KL568376v1... [bam_rmdup_core] processing reference chrUn_KL568377v1... [bam_rmdup_core] processing reference chrUn_KL568379v1... [bam_rmdup_core] processing reference chrUn_KL568381v1... [bam_rmdup_core] processing reference chrUn_KL568384v1... [bam_rmdup_core] processing reference chrUn_KL568387v1... [bam_rmdup_core] processing reference chrUn_KL568388v1... [bam_rmdup_core] processing reference chrUn_KL568389v1... [bam_rmdup_core] processing reference chrUn_KL568390v1... [bam_rmdup_core] processing reference chrUn_KL568391v1... [bam_rmdup_core] processing reference chrUn_KL568392v1... [bam_rmdup_core] processing reference chrUn_KL568394v1... [bam_rmdup_core] processing reference chrUn_KL568395v1... [bam_rmdup_core] processing reference chrUn_AABR07023967v1... [bam_rmdup_core] processing reference chrUn_KL568396v1... [bam_rmdup_core] processing reference chrUn_KL568397v1... [bam_rmdup_core] processing reference chrUn_KL568398v1... [bam_rmdup_core] processing reference chrUn_KL568399v1... [bam_rmdup_core] processing reference chrUn_KL568400v1... [bam_rmdup_core] processing reference chrUn_KL568402v1... [bam_rmdup_core] processing reference chrUn_AABR07023990v1... [bam_rmdup_core] processing reference chrUn_KL568403v1... [bam_rmdup_core] processing reference chrUn_KL568404v1... [bam_rmdup_core] processing reference chrUn_KL568405v1... [bam_rmdup_core] processing reference chrUn_KL568406v1... [bam_rmdup_core] processing reference chrUn_KL568407v1... [bam_rmdup_core] processing reference chrUn_KL568409v1... [bam_rmdup_core] processing reference chrUn_AABR07024031v1... [bam_rmdup_core] processing reference chrUn_AABR07024032v1... [bam_rmdup_core] processing reference chrUn_KL568410v1... [bam_rmdup_core] processing reference chrUn_AABR07024039v1... [bam_rmdup_core] processing reference chrUn_AABR07024040v1... [bam_rmdup_core] processing reference chrUn_AABR07024041v1... [bam_rmdup_core] processing reference chrUn_AABR07024042v1... [bam_rmdup_core] processing reference chrUn_AABR07024043v1... [bam_rmdup_core] processing reference chrUn_AABR07024044v1... [bam_rmdup_core] processing reference chrUn_AABR07024045v1... [bam_rmdup_core] processing reference chrUn_AABR07024046v1... [bam_rmdup_core] processing reference chrUn_AABR07024047v1... [bam_rmdup_core] processing reference chrUn_KL568412v1... [bam_rmdup_core] processing reference chrUn_KL568413v1... [bam_rmdup_core] processing reference chrUn_KL568414v1... [bam_rmdup_core] processing reference chrUn_KL568415v1... [bam_rmdup_core] processing reference chrUn_AABR07024066v1... [bam_rmdup_core] processing reference chrUn_KL568416v1... [bam_rmdup_core] processing reference chrUn_KL568417v1... [bam_rmdup_core] processing reference chrUn_AABR07024071v1... [bam_rmdup_core] processing reference chrUn_KL568418v1... [bam_rmdup_core] processing reference chrUn_KL568419v1... [bam_rmdup_core] processing reference chrUn_KL568420v1... [bam_rmdup_core] processing reference chrUn_KL568421v1... [bam_rmdup_core] processing reference chrUn_AABR07024101v1... [bam_rmdup_core] processing reference chrUn_AABR07024102v1... [bam_rmdup_core] processing reference chrUn_AABR07024104v1... [bam_rmdup_core] processing reference chrUn_AABR07024106v1... [bam_rmdup_core] processing reference chrUn_KL568423v1... [bam_rmdup_core] processing reference chrUn_KL568424v1... [bam_rmdup_core] processing reference chrUn_AABR07024118v1... [bam_rmdup_core] processing reference chrUn_AABR07024119v1... [bam_rmdup_core] processing reference chrUn_AABR07024120v1... [bam_rmdup_core] processing reference chrUn_AABR07024122v1... [bam_rmdup_core] processing reference chrUn_AABR07024123v1... [bam_rmdup_core] processing reference chrUn_AABR07024124v1... [bam_rmdup_core] processing reference chrUn_KL568427v1... [bam_rmdup_core] processing reference chrUn_KL568428v1... [bam_rmdup_core] processing reference chrUn_KL568430v1... [bam_rmdup_core] processing reference chrUn_KL568431v1... [bam_rmdup_core] processing reference chrUn_AABR07024138v1... [bam_rmdup_core] processing reference chrUn_KL568432v1... [bam_rmdup_core] processing reference chrUn_AABR07024145v1... [bam_rmdup_core] processing reference chrUn_KL568433v1... [bam_rmdup_core] processing reference chrUn_AABR07024150v1... [bam_rmdup_core] processing reference chrUn_KL568434v1... [bam_rmdup_core] processing reference chrUn_AABR07024159v1... [bam_rmdup_core] processing reference chrUn_AABR07024160v1... [bam_rmdup_core] processing reference chrUn_KL568435v1... [bam_rmdup_core] processing reference chrUn_KL568436v1... [bam_rmdup_core] processing reference chrUn_KL568438v1... [bam_rmdup_core] processing reference chrUn_AABR07024182v1... [bam_rmdup_core] processing reference chrUn_KL568440v1... [bam_rmdup_core] processing reference chrUn_AABR07024188v1... [bam_rmdup_core] processing reference chrUn_KL568441v1... [bam_rmdup_core] processing reference chrUn_AABR07024192v1... [bam_rmdup_core] processing reference chrUn_AABR07024195v1... [bam_rmdup_core] processing reference chrUn_KL568442v1... [bam_rmdup_core] processing reference chrUn_KL568443v1... [bam_rmdup_core] processing reference chrUn_AABR07024203v1... [bam_rmdup_core] processing reference chrUn_AABR07024206v1... [bam_rmdup_core] processing reference chrUn_KL568445v1... [bam_rmdup_core] processing reference chrUn_KL568446v1... [bam_rmdup_core] processing reference chrUn_KL568447v1... [bam_rmdup_core] processing reference chrUn_AABR07022335v1... [bam_rmdup_core] processing reference chrUn_KL568449v1... [bam_rmdup_core] processing reference chrUn_KL568450v1... [bam_rmdup_core] processing reference chrUn_KL568451v1... [bam_rmdup_core] processing reference chrUn_AABR07024262v1... [bam_rmdup_core] processing reference chrUn_AABR07024263v1... [bam_rmdup_core] processing reference chrUn_AABR07024264v1... [bam_rmdup_core] processing reference chrUn_KL568452v1... [bam_rmdup_core] processing reference chrUn_KL568453v1... [bam_rmdup_core] processing reference chrUn_KL568454v1... [bam_rmdup_core] processing reference chrUn_KL568455v1... [bam_rmdup_core] processing reference chrUn_AABR07024286v1... [bam_rmdup_core] processing reference chrUn_KL568456v1... [bam_rmdup_core] processing reference chrUn_AABR07024290v1... [bam_rmdup_core] processing reference chrUn_AABR07024291v1... [bam_rmdup_core] processing reference chrUn_AABR07024294v1... [bam_rmdup_core] processing reference chrUn_KL568458v1... [bam_rmdup_core] processing reference chrUn_AABR07024304v1... [bam_rmdup_core] processing reference chrUn_KL568460v1... [bam_rmdup_core] processing reference chrUn_KL568461v1... [bam_rmdup_core] processing reference chrUn_KL568462v1... [bam_rmdup_core] processing reference chrUn_KL568463v1... [bam_rmdup_core] processing reference chrUn_AABR07022342v1... [bam_rmdup_core] processing reference chrUn_AABR07024332v1... [bam_rmdup_core] processing reference chrUn_KL568464v1... [bam_rmdup_core] processing reference chrUn_KL568465v1... [bam_rmdup_core] processing reference chrUn_AABR07024349v1... [bam_rmdup_core] processing reference chrUn_AABR07024350v1... [bam_rmdup_core] processing reference chrUn_AABR07024351v1... [bam_rmdup_core] processing reference chrUn_KL568466v1... [bam_rmdup_core] processing reference chrUn_KL568467v1... [bam_rmdup_core] processing reference chrUn_KL568468v1... [bam_rmdup_core] processing reference chrUn_KL568470v1... [bam_rmdup_core] processing reference chrUn_KL568471v1... [bam_rmdup_core] processing reference chrUn_KL568472v1... [bam_rmdup_core] processing reference chrUn_AABR07024374v1... [bam_rmdup_core] processing reference chrUn_KL568473v1... [bam_rmdup_core] processing reference chrUn_AABR07024382v1... [bam_rmdup_core] processing reference chrUn_AABR07024383v1... [bam_rmdup_core] processing reference chrUn_KL568474v1... [bam_rmdup_core] processing reference chrUn_KL568475v1... [bam_rmdup_core] processing reference chrUn_AABR07024394v1... [bam_rmdup_core] processing reference chrUn_AABR07024397v1... [bam_rmdup_core] processing reference chrUn_AABR07024398v1... [bam_rmdup_core] processing reference chrUn_KL568477v1... [bam_rmdup_core] processing reference chrUn_KL568478v1... [bam_rmdup_core] processing reference chrUn_KL568479v1... [bam_rmdup_core] processing reference chrUn_KL568480v1... [bam_rmdup_core] processing reference chrUn_KL568482v1... [bam_rmdup_core] processing reference chrUn_KL568483v1... [bam_rmdup_core] processing reference chrUn_AABR07024421v1... [bam_rmdup_core] processing reference chrUn_KL568485v1... [bam_rmdup_core] processing reference chrUn_KL568487v1... [bam_rmdup_core] processing reference chrUn_KL568488v1... [bam_rmdup_core] processing reference chrUn_KL568492v1... [bam_rmdup_core] processing reference chrUn_KL568498v1... [bam_rmdup_core] processing reference chrUn_KL568501v1... [bam_rmdup_core] processing reference chrUn_KL568510v1... [bam_rmdup_core] processing reference chrUn_KL568512v1... [bam_rmdup_core] processing reference chrUn_KL568515v1... [bam_rmdup_core] processing reference chrUn_KL568517v1... [bam_rmdup_core] processing reference chrUn_KL568518v1... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrX_KL568113v1_random... [bam_rmdup_core] processing reference chrX_KL568118v1_random... [bam_rmdup_core] processing reference chrX_AABR07045766v1_random... [bam_rmdup_core] processing reference chrX_KL568120v1_random... [bam_rmdup_core] processing reference chrX_KL568121v1_random... [bam_rmdup_core] processing reference chrX_KL568125v1_random... [bam_rmdup_core] processing reference chrX_KL568126v1_random... [bam_rmdup_core] processing reference chrX_KL568128v1_random... [bam_rmdup_core] processing reference chrX_KL568131v1_random... [bam_rmdup_core] processing reference chrX_KL568132v1_random... [bam_rmdup_core] processing reference chrX_KL568133v1_random... [bam_rmdup_core] processing reference chrX_KL568134v1_random... [bam_rmdup_core] processing reference chrX_KL568135v1_random... [bam_rmdup_core] processing reference chrX_AABR07045688v1_random... [bam_rmdup_core] processing reference chrX_KL568136v1_random... [bam_rmdup_core] processing reference chrY... [bam_rmdup_core] processing reference chrY_KL568139v1_random... [bam_rmdup_core] processing reference chrY_KL568140v1_random... [bam_rmdup_core] processing reference chrY_KL568141v1_random... [bam_rmdup_core] processing reference chrY_KL568142v1_random... [bam_rmdup_core] processing reference chrY_KL568143v1_random... [bam_rmdup_core] processing reference chrY_KL568144v1_random... [bam_rmdup_core] processing reference chrY_KL568145v1_random... [bam_rmdup_core] processing reference chrY_KL568146v1_random... [bam_rmdup_core] processing reference chrY_KL568147v1_random... [bam_rmdup_core] processing reference chrY_KL568148v1_random... [bam_rmdup_core] processing reference chrY_KL568149v1_random... [bam_rmdup_core] processing reference chrY_KL568150v1_random... [bam_rmdup_core] processing reference chrY_KL568151v1_random... [bam_rmdup_core] processing reference chrY_KL568152v1_random... [bam_rmdup_core] processing reference chrY_KL568153v1_random... [bam_rmdup_core] processing reference chrY_KL568154v1_random... [bam_rmdup_core] processing reference chrY_KL568155v1_random... [bam_rmdup_core] processing reference chrY_KL568156v1_random... [bam_rmdup_core] processing reference chrY_KL568157v1_random... [bam_rmdup_core] processing reference chrY_KL568158v1_random... [bam_rmdup_core] processing reference chrY_KL568159v1_random... [bam_rmdup_core] processing reference chrY_KL568160v1_random... [bam_rmdup_core] processing reference chrY_KL568161v1_random... [bam_rmdup_core] processing reference chrY_KL568162v1_random... [bam_rmdup_core] processing reference chrY_KL568163v1_random... [bam_rmdup_core] processing reference chrY_KL568164v1_random... [bam_rmdup_core] processing reference chrY_KL568165v1_random... [bam_rmdup_core] processing reference chrY_KL568166v1_random... [bam_rmdup_core] 3900 / 875475 = 0.0045 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:42:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:42:48: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:42:48: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:42:52: 1000000 INFO @ Fri, 16 Oct 2020 06:42:56: #1 tag size is determined as 49 bps INFO @ Fri, 16 Oct 2020 06:42:56: #1 tag size = 49 INFO @ Fri, 16 Oct 2020 06:42:56: #1 total tags in treatment: 829895 INFO @ Fri, 16 Oct 2020 06:42:56: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:42:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:42:56: #1 tags after filtering in treatment: 827436 INFO @ Fri, 16 Oct 2020 06:42:56: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:42:56: #1 finished! INFO @ Fri, 16 Oct 2020 06:42:56: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:42:56: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:42:59: #2 number of paired peaks: 28005 INFO @ Fri, 16 Oct 2020 06:42:59: start model_add_line... INFO @ Fri, 16 Oct 2020 06:42:59: start X-correlation... INFO @ Fri, 16 Oct 2020 06:42:59: end of X-cor INFO @ Fri, 16 Oct 2020 06:42:59: #2 finished! INFO @ Fri, 16 Oct 2020 06:42:59: #2 predicted fragment length is 299 bps INFO @ Fri, 16 Oct 2020 06:42:59: #2 alternative fragment length(s) may be 299 bps INFO @ Fri, 16 Oct 2020 06:42:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.05_model.r INFO @ Fri, 16 Oct 2020 06:42:59: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:42:59: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:43:01: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:43:02: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.05_peaks.xls INFO @ Fri, 16 Oct 2020 06:43:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:43:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.05_summits.bed INFO @ Fri, 16 Oct 2020 06:43:02: Done! pass1 - making usageList (9 chroms): 1 millis pass2 - checking and writing primary data (58 records, 4 fields): 2 millis CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:43:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:43:17: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:43:17: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:43:22: 1000000 INFO @ Fri, 16 Oct 2020 06:43:26: #1 tag size is determined as 49 bps INFO @ Fri, 16 Oct 2020 06:43:26: #1 tag size = 49 INFO @ Fri, 16 Oct 2020 06:43:26: #1 total tags in treatment: 829895 INFO @ Fri, 16 Oct 2020 06:43:26: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:43:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:43:26: #1 tags after filtering in treatment: 827436 INFO @ Fri, 16 Oct 2020 06:43:26: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:43:26: #1 finished! INFO @ Fri, 16 Oct 2020 06:43:26: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:43:26: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:43:28: #2 number of paired peaks: 28005 INFO @ Fri, 16 Oct 2020 06:43:28: start model_add_line... INFO @ Fri, 16 Oct 2020 06:43:28: start X-correlation... INFO @ Fri, 16 Oct 2020 06:43:28: end of X-cor INFO @ Fri, 16 Oct 2020 06:43:28: #2 finished! INFO @ Fri, 16 Oct 2020 06:43:28: #2 predicted fragment length is 299 bps INFO @ Fri, 16 Oct 2020 06:43:28: #2 alternative fragment length(s) may be 299 bps INFO @ Fri, 16 Oct 2020 06:43:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.10_model.r INFO @ Fri, 16 Oct 2020 06:43:28: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:43:28: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:43:30: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:43:31: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.10_peaks.xls INFO @ Fri, 16 Oct 2020 06:43:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:43:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.10_summits.bed INFO @ Fri, 16 Oct 2020 06:43:31: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (33 records, 4 fields): 1 millis CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:43:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:43:47: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:43:47: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:43:52: 1000000 INFO @ Fri, 16 Oct 2020 06:43:56: #1 tag size is determined as 49 bps INFO @ Fri, 16 Oct 2020 06:43:56: #1 tag size = 49 INFO @ Fri, 16 Oct 2020 06:43:56: #1 total tags in treatment: 829895 INFO @ Fri, 16 Oct 2020 06:43:56: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:43:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:43:56: #1 tags after filtering in treatment: 827436 INFO @ Fri, 16 Oct 2020 06:43:56: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:43:56: #1 finished! INFO @ Fri, 16 Oct 2020 06:43:56: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:43:56: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:43:58: #2 number of paired peaks: 28005 INFO @ Fri, 16 Oct 2020 06:43:58: start model_add_line... INFO @ Fri, 16 Oct 2020 06:43:58: start X-correlation... INFO @ Fri, 16 Oct 2020 06:43:58: end of X-cor INFO @ Fri, 16 Oct 2020 06:43:58: #2 finished! INFO @ Fri, 16 Oct 2020 06:43:58: #2 predicted fragment length is 299 bps INFO @ Fri, 16 Oct 2020 06:43:58: #2 alternative fragment length(s) may be 299 bps INFO @ Fri, 16 Oct 2020 06:43:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.20_model.r INFO @ Fri, 16 Oct 2020 06:43:58: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:43:58: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:44:00: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:44:01: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.20_peaks.xls INFO @ Fri, 16 Oct 2020 06:44:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:44:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8566509/SRX8566509.20_summits.bed INFO @ Fri, 16 Oct 2020 06:44:01: Done! pass1 - making usageList (4 chroms): 0 millis pass2 - checking and writing primary data (14 records, 4 fields): 1 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。