Job ID = 8184620 SRX = SRX8047629 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-08-10T05:00:07 prefetch.2.10.7: 1) Downloading 'SRR11471353'... 2020-08-10T05:00:07 prefetch.2.10.7: Downloading via HTTPS... 2020-08-10T05:02:15 prefetch.2.10.7: HTTPS download succeed 2020-08-10T05:02:15 prefetch.2.10.7: 1) 'SRR11471353' was downloaded successfully Read 56496939 spots for SRR11471353/SRR11471353.sra Written 56496939 spots for SRR11471353/SRR11471353.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:48:49 56496939 reads; of these: 56496939 (100.00%) were unpaired; of these: 2004832 (3.55%) aligned 0 times 38822697 (68.72%) aligned exactly 1 time 15669410 (27.73%) aligned >1 times 96.45% overall alignment rate Time searching: 00:48:50 Overall time: 00:48:50 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 2263136 / 54492107 = 0.0415 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 15:08:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 15:08:06: #1 read tag files... INFO @ Mon, 10 Aug 2020 15:08:06: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 15:08:12: 1000000 INFO @ Mon, 10 Aug 2020 15:08:19: 2000000 INFO @ Mon, 10 Aug 2020 15:08:26: 3000000 INFO @ Mon, 10 Aug 2020 15:08:33: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 15:08:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 15:08:36: #1 read tag files... INFO @ Mon, 10 Aug 2020 15:08:36: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 15:08:40: 5000000 INFO @ Mon, 10 Aug 2020 15:08:43: 1000000 INFO @ Mon, 10 Aug 2020 15:08:48: 6000000 INFO @ Mon, 10 Aug 2020 15:08:50: 2000000 INFO @ Mon, 10 Aug 2020 15:08:55: 7000000 INFO @ Mon, 10 Aug 2020 15:08:56: 3000000 INFO @ Mon, 10 Aug 2020 15:09:03: 8000000 INFO @ Mon, 10 Aug 2020 15:09:03: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 15:09:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 15:09:06: #1 read tag files... INFO @ Mon, 10 Aug 2020 15:09:06: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 15:09:10: 5000000 INFO @ Mon, 10 Aug 2020 15:09:10: 9000000 INFO @ Mon, 10 Aug 2020 15:09:13: 1000000 INFO @ Mon, 10 Aug 2020 15:09:17: 6000000 INFO @ Mon, 10 Aug 2020 15:09:17: 10000000 INFO @ Mon, 10 Aug 2020 15:09:21: 2000000 INFO @ Mon, 10 Aug 2020 15:09:24: 7000000 INFO @ Mon, 10 Aug 2020 15:09:25: 11000000 INFO @ Mon, 10 Aug 2020 15:09:29: 3000000 INFO @ Mon, 10 Aug 2020 15:09:30: 8000000 INFO @ Mon, 10 Aug 2020 15:09:32: 12000000 INFO @ Mon, 10 Aug 2020 15:09:36: 4000000 INFO @ Mon, 10 Aug 2020 15:09:37: 9000000 INFO @ Mon, 10 Aug 2020 15:09:39: 13000000 INFO @ Mon, 10 Aug 2020 15:09:44: 5000000 INFO @ Mon, 10 Aug 2020 15:09:44: 10000000 INFO @ Mon, 10 Aug 2020 15:09:47: 14000000 INFO @ Mon, 10 Aug 2020 15:09:51: 11000000 INFO @ Mon, 10 Aug 2020 15:09:51: 6000000 INFO @ Mon, 10 Aug 2020 15:09:54: 15000000 INFO @ Mon, 10 Aug 2020 15:09:58: 12000000 INFO @ Mon, 10 Aug 2020 15:09:59: 7000000 INFO @ Mon, 10 Aug 2020 15:10:01: 16000000 INFO @ Mon, 10 Aug 2020 15:10:05: 13000000 INFO @ Mon, 10 Aug 2020 15:10:07: 8000000 INFO @ Mon, 10 Aug 2020 15:10:08: 17000000 INFO @ Mon, 10 Aug 2020 15:10:11: 14000000 INFO @ Mon, 10 Aug 2020 15:10:14: 9000000 INFO @ Mon, 10 Aug 2020 15:10:16: 18000000 INFO @ Mon, 10 Aug 2020 15:10:18: 15000000 INFO @ Mon, 10 Aug 2020 15:10:22: 10000000 INFO @ Mon, 10 Aug 2020 15:10:23: 19000000 INFO @ Mon, 10 Aug 2020 15:10:25: 16000000 INFO @ Mon, 10 Aug 2020 15:10:30: 11000000 INFO @ Mon, 10 Aug 2020 15:10:30: 20000000 INFO @ Mon, 10 Aug 2020 15:10:32: 17000000 INFO @ Mon, 10 Aug 2020 15:10:37: 12000000 INFO @ Mon, 10 Aug 2020 15:10:37: 21000000 INFO @ Mon, 10 Aug 2020 15:10:39: 18000000 INFO @ Mon, 10 Aug 2020 15:10:45: 13000000 INFO @ Mon, 10 Aug 2020 15:10:45: 22000000 INFO @ Mon, 10 Aug 2020 15:10:45: 19000000 INFO @ Mon, 10 Aug 2020 15:10:52: 23000000 INFO @ Mon, 10 Aug 2020 15:10:52: 14000000 INFO @ Mon, 10 Aug 2020 15:10:52: 20000000 INFO @ Mon, 10 Aug 2020 15:10:59: 21000000 INFO @ Mon, 10 Aug 2020 15:10:59: 24000000 INFO @ Mon, 10 Aug 2020 15:11:00: 15000000 INFO @ Mon, 10 Aug 2020 15:11:06: 22000000 INFO @ Mon, 10 Aug 2020 15:11:07: 25000000 INFO @ Mon, 10 Aug 2020 15:11:07: 16000000 INFO @ Mon, 10 Aug 2020 15:11:13: 23000000 INFO @ Mon, 10 Aug 2020 15:11:14: 26000000 INFO @ Mon, 10 Aug 2020 15:11:15: 17000000 INFO @ Mon, 10 Aug 2020 15:11:20: 24000000 INFO @ Mon, 10 Aug 2020 15:11:21: 27000000 INFO @ Mon, 10 Aug 2020 15:11:23: 18000000 INFO @ Mon, 10 Aug 2020 15:11:26: 25000000 INFO @ Mon, 10 Aug 2020 15:11:29: 28000000 INFO @ Mon, 10 Aug 2020 15:11:30: 19000000 INFO @ Mon, 10 Aug 2020 15:11:33: 26000000 INFO @ Mon, 10 Aug 2020 15:11:36: 29000000 INFO @ Mon, 10 Aug 2020 15:11:38: 20000000 INFO @ Mon, 10 Aug 2020 15:11:40: 27000000 INFO @ Mon, 10 Aug 2020 15:11:43: 30000000 INFO @ Mon, 10 Aug 2020 15:11:45: 21000000 INFO @ Mon, 10 Aug 2020 15:11:47: 28000000 INFO @ Mon, 10 Aug 2020 15:11:50: 31000000 INFO @ Mon, 10 Aug 2020 15:11:53: 22000000 INFO @ Mon, 10 Aug 2020 15:11:54: 29000000 INFO @ Mon, 10 Aug 2020 15:11:57: 32000000 INFO @ Mon, 10 Aug 2020 15:12:01: 30000000 INFO @ Mon, 10 Aug 2020 15:12:01: 23000000 INFO @ Mon, 10 Aug 2020 15:12:05: 33000000 INFO @ Mon, 10 Aug 2020 15:12:07: 31000000 INFO @ Mon, 10 Aug 2020 15:12:08: 24000000 INFO @ Mon, 10 Aug 2020 15:12:12: 34000000 INFO @ Mon, 10 Aug 2020 15:12:14: 32000000 INFO @ Mon, 10 Aug 2020 15:12:16: 25000000 INFO @ Mon, 10 Aug 2020 15:12:19: 35000000 INFO @ Mon, 10 Aug 2020 15:12:21: 33000000 INFO @ Mon, 10 Aug 2020 15:12:23: 26000000 INFO @ Mon, 10 Aug 2020 15:12:27: 36000000 INFO @ Mon, 10 Aug 2020 15:12:28: 34000000 INFO @ Mon, 10 Aug 2020 15:12:31: 27000000 INFO @ Mon, 10 Aug 2020 15:12:34: 37000000 INFO @ Mon, 10 Aug 2020 15:12:35: 35000000 INFO @ Mon, 10 Aug 2020 15:12:39: 28000000 INFO @ Mon, 10 Aug 2020 15:12:41: 38000000 INFO @ Mon, 10 Aug 2020 15:12:41: 36000000 INFO @ Mon, 10 Aug 2020 15:12:46: 29000000 INFO @ Mon, 10 Aug 2020 15:12:48: 37000000 INFO @ Mon, 10 Aug 2020 15:12:49: 39000000 INFO @ Mon, 10 Aug 2020 15:12:54: 30000000 INFO @ Mon, 10 Aug 2020 15:12:55: 38000000 INFO @ Mon, 10 Aug 2020 15:12:56: 40000000 INFO @ Mon, 10 Aug 2020 15:13:01: 31000000 INFO @ Mon, 10 Aug 2020 15:13:02: 39000000 INFO @ Mon, 10 Aug 2020 15:13:03: 41000000 INFO @ Mon, 10 Aug 2020 15:13:09: 40000000 INFO @ Mon, 10 Aug 2020 15:13:09: 32000000 INFO @ Mon, 10 Aug 2020 15:13:10: 42000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 10 Aug 2020 15:13:16: 41000000 INFO @ Mon, 10 Aug 2020 15:13:17: 33000000 INFO @ Mon, 10 Aug 2020 15:13:18: 43000000 INFO @ Mon, 10 Aug 2020 15:13:22: 42000000 INFO @ Mon, 10 Aug 2020 15:13:24: 34000000 INFO @ Mon, 10 Aug 2020 15:13:25: 44000000 INFO @ Mon, 10 Aug 2020 15:13:29: 43000000 INFO @ Mon, 10 Aug 2020 15:13:32: 35000000 INFO @ Mon, 10 Aug 2020 15:13:32: 45000000 INFO @ Mon, 10 Aug 2020 15:13:36: 44000000 INFO @ Mon, 10 Aug 2020 15:13:39: 36000000 INFO @ Mon, 10 Aug 2020 15:13:40: 46000000 INFO @ Mon, 10 Aug 2020 15:13:43: 45000000 INFO @ Mon, 10 Aug 2020 15:13:47: 47000000 INFO @ Mon, 10 Aug 2020 15:13:47: 37000000 INFO @ Mon, 10 Aug 2020 15:13:50: 46000000 INFO @ Mon, 10 Aug 2020 15:13:54: 48000000 INFO @ Mon, 10 Aug 2020 15:13:55: 38000000 INFO @ Mon, 10 Aug 2020 15:13:57: 47000000 INFO @ Mon, 10 Aug 2020 15:14:02: 49000000 INFO @ Mon, 10 Aug 2020 15:14:02: 39000000 INFO @ Mon, 10 Aug 2020 15:14:04: 48000000 INFO @ Mon, 10 Aug 2020 15:14:09: 50000000 INFO @ Mon, 10 Aug 2020 15:14:10: 40000000 INFO @ Mon, 10 Aug 2020 15:14:10: 49000000 INFO @ Mon, 10 Aug 2020 15:14:16: 51000000 INFO @ Mon, 10 Aug 2020 15:14:17: 50000000 INFO @ Mon, 10 Aug 2020 15:14:17: 41000000 INFO @ Mon, 10 Aug 2020 15:14:24: 52000000 INFO @ Mon, 10 Aug 2020 15:14:24: 51000000 INFO @ Mon, 10 Aug 2020 15:14:25: 42000000 INFO @ Mon, 10 Aug 2020 15:14:26: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 15:14:26: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 15:14:26: #1 total tags in treatment: 52228971 INFO @ Mon, 10 Aug 2020 15:14:26: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 15:14:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 15:14:27: #1 tags after filtering in treatment: 52228919 INFO @ Mon, 10 Aug 2020 15:14:27: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 15:14:27: #1 finished! INFO @ Mon, 10 Aug 2020 15:14:27: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 15:14:27: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 15:14:31: #2 number of paired peaks: 6496 INFO @ Mon, 10 Aug 2020 15:14:31: start model_add_line... INFO @ Mon, 10 Aug 2020 15:14:31: 52000000 INFO @ Mon, 10 Aug 2020 15:14:31: start X-correlation... INFO @ Mon, 10 Aug 2020 15:14:31: end of X-cor INFO @ Mon, 10 Aug 2020 15:14:31: #2 finished! INFO @ Mon, 10 Aug 2020 15:14:31: #2 predicted fragment length is 54 bps INFO @ Mon, 10 Aug 2020 15:14:31: #2 alternative fragment length(s) may be 54 bps INFO @ Mon, 10 Aug 2020 15:14:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.05_model.r WARNING @ Mon, 10 Aug 2020 15:14:31: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 15:14:31: #2 You may need to consider one of the other alternative d(s): 54 WARNING @ Mon, 10 Aug 2020 15:14:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 15:14:31: #3 Call peaks... INFO @ Mon, 10 Aug 2020 15:14:31: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 15:14:33: 43000000 INFO @ Mon, 10 Aug 2020 15:14:33: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 15:14:33: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 15:14:33: #1 total tags in treatment: 52228971 INFO @ Mon, 10 Aug 2020 15:14:33: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 15:14:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 15:14:34: #1 tags after filtering in treatment: 52228919 INFO @ Mon, 10 Aug 2020 15:14:34: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 15:14:34: #1 finished! INFO @ Mon, 10 Aug 2020 15:14:34: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 15:14:34: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 15:14:38: #2 number of paired peaks: 6496 INFO @ Mon, 10 Aug 2020 15:14:38: start model_add_line... INFO @ Mon, 10 Aug 2020 15:14:38: start X-correlation... INFO @ Mon, 10 Aug 2020 15:14:38: end of X-cor INFO @ Mon, 10 Aug 2020 15:14:38: #2 finished! INFO @ Mon, 10 Aug 2020 15:14:38: #2 predicted fragment length is 54 bps INFO @ Mon, 10 Aug 2020 15:14:38: #2 alternative fragment length(s) may be 54 bps INFO @ Mon, 10 Aug 2020 15:14:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.10_model.r WARNING @ Mon, 10 Aug 2020 15:14:38: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 15:14:38: #2 You may need to consider one of the other alternative d(s): 54 WARNING @ Mon, 10 Aug 2020 15:14:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 15:14:38: #3 Call peaks... INFO @ Mon, 10 Aug 2020 15:14:38: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 15:14:40: 44000000 INFO @ Mon, 10 Aug 2020 15:14:47: 45000000 INFO @ Mon, 10 Aug 2020 15:14:54: 46000000 INFO @ Mon, 10 Aug 2020 15:15:01: 47000000 INFO @ Mon, 10 Aug 2020 15:15:08: 48000000 INFO @ Mon, 10 Aug 2020 15:15:15: 49000000 BigWig に変換しました。 INFO @ Mon, 10 Aug 2020 15:15:23: 50000000 INFO @ Mon, 10 Aug 2020 15:15:29: 51000000 INFO @ Mon, 10 Aug 2020 15:15:36: 52000000 INFO @ Mon, 10 Aug 2020 15:15:38: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 15:15:38: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 15:15:38: #1 total tags in treatment: 52228971 INFO @ Mon, 10 Aug 2020 15:15:38: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 15:15:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 15:15:39: #1 tags after filtering in treatment: 52228919 INFO @ Mon, 10 Aug 2020 15:15:39: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 15:15:39: #1 finished! INFO @ Mon, 10 Aug 2020 15:15:39: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 15:15:39: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 15:15:43: #2 number of paired peaks: 6496 INFO @ Mon, 10 Aug 2020 15:15:43: start model_add_line... INFO @ Mon, 10 Aug 2020 15:15:44: start X-correlation... INFO @ Mon, 10 Aug 2020 15:15:44: end of X-cor INFO @ Mon, 10 Aug 2020 15:15:44: #2 finished! INFO @ Mon, 10 Aug 2020 15:15:44: #2 predicted fragment length is 54 bps INFO @ Mon, 10 Aug 2020 15:15:44: #2 alternative fragment length(s) may be 54 bps INFO @ Mon, 10 Aug 2020 15:15:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.20_model.r WARNING @ Mon, 10 Aug 2020 15:15:44: #2 Since the d (54) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 15:15:44: #2 You may need to consider one of the other alternative d(s): 54 WARNING @ Mon, 10 Aug 2020 15:15:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 15:15:44: #3 Call peaks... INFO @ Mon, 10 Aug 2020 15:15:44: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 15:16:20: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 15:16:28: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 15:17:17: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.05_peaks.xls INFO @ Mon, 10 Aug 2020 15:17:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.05_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 15:17:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.05_summits.bed INFO @ Mon, 10 Aug 2020 15:17:17: Done! pass1 - making usageList (80 chroms): 2 millis pass2 - checking and writing primary data (6144 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 15:17:26: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.10_peaks.xls INFO @ Mon, 10 Aug 2020 15:17:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.10_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 15:17:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.10_summits.bed INFO @ Mon, 10 Aug 2020 15:17:26: Done! pass1 - making usageList (62 chroms): 1 millis pass2 - checking and writing primary data (2375 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 15:17:32: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 15:18:30: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.20_peaks.xls INFO @ Mon, 10 Aug 2020 15:18:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.20_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 15:18:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047629/SRX8047629.20_summits.bed INFO @ Mon, 10 Aug 2020 15:18:30: Done! pass1 - making usageList (40 chroms): 1 millis pass2 - checking and writing primary data (843 records, 4 fields): 3 millis CompletedMACS2peakCalling