Job ID = 8184531 SRX = SRX8047601 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-08-10T04:11:11 prefetch.2.10.7: 1) Downloading 'SRR11471325'... 2020-08-10T04:11:11 prefetch.2.10.7: Downloading via HTTPS... 2020-08-10T04:13:43 prefetch.2.10.7: HTTPS download succeed 2020-08-10T04:13:43 prefetch.2.10.7: 1) 'SRR11471325' was downloaded successfully Read 60660789 spots for SRR11471325/SRR11471325.sra Written 60660789 spots for SRR11471325/SRR11471325.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:02 Multiseed full-index search: 00:52:41 60660789 reads; of these: 60660789 (100.00%) were unpaired; of these: 1470913 (2.42%) aligned 0 times 43871493 (72.32%) aligned exactly 1 time 15318383 (25.25%) aligned >1 times 97.58% overall alignment rate Time searching: 00:52:46 Overall time: 00:52:46 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 7032220 / 59189876 = 0.1188 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 14:24:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 14:24:32: #1 read tag files... INFO @ Mon, 10 Aug 2020 14:24:32: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 14:24:38: 1000000 INFO @ Mon, 10 Aug 2020 14:24:44: 2000000 INFO @ Mon, 10 Aug 2020 14:24:50: 3000000 INFO @ Mon, 10 Aug 2020 14:24:55: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 14:25:01: 5000000 INFO @ Mon, 10 Aug 2020 14:25:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 14:25:02: #1 read tag files... INFO @ Mon, 10 Aug 2020 14:25:02: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 14:25:07: 6000000 INFO @ Mon, 10 Aug 2020 14:25:08: 1000000 INFO @ Mon, 10 Aug 2020 14:25:13: 7000000 INFO @ Mon, 10 Aug 2020 14:25:14: 2000000 INFO @ Mon, 10 Aug 2020 14:25:19: 8000000 INFO @ Mon, 10 Aug 2020 14:25:20: 3000000 INFO @ Mon, 10 Aug 2020 14:25:25: 9000000 INFO @ Mon, 10 Aug 2020 14:25:26: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 14:25:31: 10000000 INFO @ Mon, 10 Aug 2020 14:25:32: 5000000 INFO @ Mon, 10 Aug 2020 14:25:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 14:25:32: #1 read tag files... INFO @ Mon, 10 Aug 2020 14:25:32: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 14:25:37: 11000000 INFO @ Mon, 10 Aug 2020 14:25:38: 6000000 INFO @ Mon, 10 Aug 2020 14:25:39: 1000000 INFO @ Mon, 10 Aug 2020 14:25:43: 12000000 INFO @ Mon, 10 Aug 2020 14:25:44: 7000000 INFO @ Mon, 10 Aug 2020 14:25:45: 2000000 INFO @ Mon, 10 Aug 2020 14:25:49: 13000000 INFO @ Mon, 10 Aug 2020 14:25:50: 8000000 INFO @ Mon, 10 Aug 2020 14:25:51: 3000000 INFO @ Mon, 10 Aug 2020 14:25:55: 14000000 INFO @ Mon, 10 Aug 2020 14:25:56: 9000000 INFO @ Mon, 10 Aug 2020 14:25:57: 4000000 INFO @ Mon, 10 Aug 2020 14:26:01: 15000000 INFO @ Mon, 10 Aug 2020 14:26:02: 10000000 INFO @ Mon, 10 Aug 2020 14:26:02: 5000000 INFO @ Mon, 10 Aug 2020 14:26:06: 16000000 INFO @ Mon, 10 Aug 2020 14:26:08: 11000000 INFO @ Mon, 10 Aug 2020 14:26:08: 6000000 INFO @ Mon, 10 Aug 2020 14:26:12: 17000000 INFO @ Mon, 10 Aug 2020 14:26:14: 12000000 INFO @ Mon, 10 Aug 2020 14:26:14: 7000000 INFO @ Mon, 10 Aug 2020 14:26:17: 18000000 INFO @ Mon, 10 Aug 2020 14:26:20: 13000000 INFO @ Mon, 10 Aug 2020 14:26:20: 8000000 INFO @ Mon, 10 Aug 2020 14:26:22: 19000000 INFO @ Mon, 10 Aug 2020 14:26:26: 14000000 INFO @ Mon, 10 Aug 2020 14:26:26: 9000000 INFO @ Mon, 10 Aug 2020 14:26:28: 20000000 INFO @ Mon, 10 Aug 2020 14:26:32: 15000000 INFO @ Mon, 10 Aug 2020 14:26:32: 10000000 INFO @ Mon, 10 Aug 2020 14:26:34: 21000000 INFO @ Mon, 10 Aug 2020 14:26:38: 16000000 INFO @ Mon, 10 Aug 2020 14:26:38: 11000000 INFO @ Mon, 10 Aug 2020 14:26:39: 22000000 INFO @ Mon, 10 Aug 2020 14:26:44: 17000000 INFO @ Mon, 10 Aug 2020 14:26:44: 12000000 INFO @ Mon, 10 Aug 2020 14:26:44: 23000000 INFO @ Mon, 10 Aug 2020 14:26:50: 24000000 INFO @ Mon, 10 Aug 2020 14:26:50: 18000000 INFO @ Mon, 10 Aug 2020 14:26:50: 13000000 INFO @ Mon, 10 Aug 2020 14:26:55: 25000000 INFO @ Mon, 10 Aug 2020 14:26:56: 19000000 INFO @ Mon, 10 Aug 2020 14:26:56: 14000000 INFO @ Mon, 10 Aug 2020 14:27:00: 26000000 INFO @ Mon, 10 Aug 2020 14:27:01: 20000000 INFO @ Mon, 10 Aug 2020 14:27:02: 15000000 INFO @ Mon, 10 Aug 2020 14:27:06: 27000000 INFO @ Mon, 10 Aug 2020 14:27:07: 21000000 INFO @ Mon, 10 Aug 2020 14:27:07: 16000000 INFO @ Mon, 10 Aug 2020 14:27:11: 28000000 INFO @ Mon, 10 Aug 2020 14:27:13: 22000000 INFO @ Mon, 10 Aug 2020 14:27:13: 17000000 INFO @ Mon, 10 Aug 2020 14:27:16: 29000000 INFO @ Mon, 10 Aug 2020 14:27:19: 23000000 INFO @ Mon, 10 Aug 2020 14:27:19: 18000000 INFO @ Mon, 10 Aug 2020 14:27:22: 30000000 INFO @ Mon, 10 Aug 2020 14:27:25: 19000000 INFO @ Mon, 10 Aug 2020 14:27:25: 24000000 INFO @ Mon, 10 Aug 2020 14:27:27: 31000000 INFO @ Mon, 10 Aug 2020 14:27:31: 20000000 INFO @ Mon, 10 Aug 2020 14:27:31: 25000000 INFO @ Mon, 10 Aug 2020 14:27:33: 32000000 INFO @ Mon, 10 Aug 2020 14:27:37: 21000000 INFO @ Mon, 10 Aug 2020 14:27:37: 26000000 INFO @ Mon, 10 Aug 2020 14:27:38: 33000000 INFO @ Mon, 10 Aug 2020 14:27:42: 22000000 INFO @ Mon, 10 Aug 2020 14:27:43: 27000000 INFO @ Mon, 10 Aug 2020 14:27:43: 34000000 INFO @ Mon, 10 Aug 2020 14:27:48: 23000000 INFO @ Mon, 10 Aug 2020 14:27:49: 28000000 INFO @ Mon, 10 Aug 2020 14:27:49: 35000000 INFO @ Mon, 10 Aug 2020 14:27:54: 36000000 INFO @ Mon, 10 Aug 2020 14:27:54: 24000000 INFO @ Mon, 10 Aug 2020 14:27:55: 29000000 INFO @ Mon, 10 Aug 2020 14:27:59: 37000000 INFO @ Mon, 10 Aug 2020 14:28:00: 25000000 INFO @ Mon, 10 Aug 2020 14:28:00: 30000000 INFO @ Mon, 10 Aug 2020 14:28:05: 38000000 INFO @ Mon, 10 Aug 2020 14:28:06: 26000000 INFO @ Mon, 10 Aug 2020 14:28:06: 31000000 INFO @ Mon, 10 Aug 2020 14:28:10: 39000000 INFO @ Mon, 10 Aug 2020 14:28:12: 27000000 INFO @ Mon, 10 Aug 2020 14:28:12: 32000000 INFO @ Mon, 10 Aug 2020 14:28:16: 40000000 INFO @ Mon, 10 Aug 2020 14:28:18: 28000000 INFO @ Mon, 10 Aug 2020 14:28:18: 33000000 INFO @ Mon, 10 Aug 2020 14:28:21: 41000000 INFO @ Mon, 10 Aug 2020 14:28:24: 29000000 INFO @ Mon, 10 Aug 2020 14:28:24: 34000000 INFO @ Mon, 10 Aug 2020 14:28:26: 42000000 INFO @ Mon, 10 Aug 2020 14:28:29: 30000000 INFO @ Mon, 10 Aug 2020 14:28:30: 35000000 INFO @ Mon, 10 Aug 2020 14:28:32: 43000000 INFO @ Mon, 10 Aug 2020 14:28:35: 31000000 INFO @ Mon, 10 Aug 2020 14:28:36: 36000000 INFO @ Mon, 10 Aug 2020 14:28:37: 44000000 INFO @ Mon, 10 Aug 2020 14:28:41: 32000000 INFO @ Mon, 10 Aug 2020 14:28:42: 37000000 INFO @ Mon, 10 Aug 2020 14:28:42: 45000000 INFO @ Mon, 10 Aug 2020 14:28:47: 33000000 INFO @ Mon, 10 Aug 2020 14:28:48: 38000000 INFO @ Mon, 10 Aug 2020 14:28:48: 46000000 INFO @ Mon, 10 Aug 2020 14:28:53: 34000000 INFO @ Mon, 10 Aug 2020 14:28:53: 47000000 INFO @ Mon, 10 Aug 2020 14:28:54: 39000000 INFO @ Mon, 10 Aug 2020 14:28:59: 48000000 INFO @ Mon, 10 Aug 2020 14:28:59: 35000000 INFO @ Mon, 10 Aug 2020 14:29:00: 40000000 INFO @ Mon, 10 Aug 2020 14:29:04: 49000000 INFO @ Mon, 10 Aug 2020 14:29:05: 36000000 INFO @ Mon, 10 Aug 2020 14:29:05: 41000000 INFO @ Mon, 10 Aug 2020 14:29:09: 50000000 INFO @ Mon, 10 Aug 2020 14:29:10: 37000000 INFO @ Mon, 10 Aug 2020 14:29:11: 42000000 INFO @ Mon, 10 Aug 2020 14:29:15: 51000000 INFO @ Mon, 10 Aug 2020 14:29:16: 38000000 INFO @ Mon, 10 Aug 2020 14:29:17: 43000000 INFO @ Mon, 10 Aug 2020 14:29:20: 52000000 INFO @ Mon, 10 Aug 2020 14:29:22: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 14:29:22: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 14:29:22: #1 total tags in treatment: 52157656 INFO @ Mon, 10 Aug 2020 14:29:22: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 14:29:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 14:29:22: 39000000 INFO @ Mon, 10 Aug 2020 14:29:23: #1 tags after filtering in treatment: 52157584 INFO @ Mon, 10 Aug 2020 14:29:23: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 14:29:23: #1 finished! INFO @ Mon, 10 Aug 2020 14:29:23: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 14:29:23: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 14:29:23: 44000000 INFO @ Mon, 10 Aug 2020 14:29:27: #2 number of paired peaks: 6045 INFO @ Mon, 10 Aug 2020 14:29:27: start model_add_line... INFO @ Mon, 10 Aug 2020 14:29:27: start X-correlation... INFO @ Mon, 10 Aug 2020 14:29:27: end of X-cor INFO @ Mon, 10 Aug 2020 14:29:27: #2 finished! INFO @ Mon, 10 Aug 2020 14:29:27: #2 predicted fragment length is 60 bps INFO @ Mon, 10 Aug 2020 14:29:27: #2 alternative fragment length(s) may be 60 bps INFO @ Mon, 10 Aug 2020 14:29:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.05_model.r WARNING @ Mon, 10 Aug 2020 14:29:27: #2 Since the d (60) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 14:29:27: #2 You may need to consider one of the other alternative d(s): 60 WARNING @ Mon, 10 Aug 2020 14:29:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 14:29:27: #3 Call peaks... INFO @ Mon, 10 Aug 2020 14:29:27: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 14:29:28: 40000000 INFO @ Mon, 10 Aug 2020 14:29:29: 45000000 INFO @ Mon, 10 Aug 2020 14:29:34: 41000000 INFO @ Mon, 10 Aug 2020 14:29:35: 46000000 INFO @ Mon, 10 Aug 2020 14:29:40: 42000000 INFO @ Mon, 10 Aug 2020 14:29:41: 47000000 INFO @ Mon, 10 Aug 2020 14:29:46: 43000000 INFO @ Mon, 10 Aug 2020 14:29:47: 48000000 INFO @ Mon, 10 Aug 2020 14:29:52: 44000000 INFO @ Mon, 10 Aug 2020 14:29:53: 49000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 10 Aug 2020 14:29:57: 45000000 INFO @ Mon, 10 Aug 2020 14:29:59: 50000000 INFO @ Mon, 10 Aug 2020 14:30:03: 46000000 INFO @ Mon, 10 Aug 2020 14:30:05: 51000000 INFO @ Mon, 10 Aug 2020 14:30:09: 47000000 INFO @ Mon, 10 Aug 2020 14:30:11: 52000000 INFO @ Mon, 10 Aug 2020 14:30:12: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 14:30:12: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 14:30:12: #1 total tags in treatment: 52157656 INFO @ Mon, 10 Aug 2020 14:30:12: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 14:30:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 14:30:13: #1 tags after filtering in treatment: 52157584 INFO @ Mon, 10 Aug 2020 14:30:13: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 14:30:13: #1 finished! INFO @ Mon, 10 Aug 2020 14:30:13: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 14:30:13: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 14:30:15: 48000000 INFO @ Mon, 10 Aug 2020 14:30:17: #2 number of paired peaks: 6045 INFO @ Mon, 10 Aug 2020 14:30:17: start model_add_line... INFO @ Mon, 10 Aug 2020 14:30:18: start X-correlation... INFO @ Mon, 10 Aug 2020 14:30:18: end of X-cor INFO @ Mon, 10 Aug 2020 14:30:18: #2 finished! INFO @ Mon, 10 Aug 2020 14:30:18: #2 predicted fragment length is 60 bps INFO @ Mon, 10 Aug 2020 14:30:18: #2 alternative fragment length(s) may be 60 bps INFO @ Mon, 10 Aug 2020 14:30:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.10_model.r WARNING @ Mon, 10 Aug 2020 14:30:18: #2 Since the d (60) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 14:30:18: #2 You may need to consider one of the other alternative d(s): 60 WARNING @ Mon, 10 Aug 2020 14:30:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 14:30:18: #3 Call peaks... INFO @ Mon, 10 Aug 2020 14:30:18: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 14:30:21: 49000000 INFO @ Mon, 10 Aug 2020 14:30:27: 50000000 INFO @ Mon, 10 Aug 2020 14:30:32: 51000000 INFO @ Mon, 10 Aug 2020 14:30:38: 52000000 INFO @ Mon, 10 Aug 2020 14:30:39: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 14:30:39: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 14:30:39: #1 total tags in treatment: 52157656 INFO @ Mon, 10 Aug 2020 14:30:39: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 14:30:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 14:30:40: #1 tags after filtering in treatment: 52157584 INFO @ Mon, 10 Aug 2020 14:30:40: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 14:30:40: #1 finished! INFO @ Mon, 10 Aug 2020 14:30:40: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 14:30:40: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 14:30:44: #2 number of paired peaks: 6045 INFO @ Mon, 10 Aug 2020 14:30:44: start model_add_line... INFO @ Mon, 10 Aug 2020 14:30:45: start X-correlation... INFO @ Mon, 10 Aug 2020 14:30:45: end of X-cor INFO @ Mon, 10 Aug 2020 14:30:45: #2 finished! INFO @ Mon, 10 Aug 2020 14:30:45: #2 predicted fragment length is 60 bps INFO @ Mon, 10 Aug 2020 14:30:45: #2 alternative fragment length(s) may be 60 bps INFO @ Mon, 10 Aug 2020 14:30:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.20_model.r WARNING @ Mon, 10 Aug 2020 14:30:45: #2 Since the d (60) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 14:30:45: #2 You may need to consider one of the other alternative d(s): 60 WARNING @ Mon, 10 Aug 2020 14:30:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 14:30:45: #3 Call peaks... INFO @ Mon, 10 Aug 2020 14:30:45: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 14:31:19: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Mon, 10 Aug 2020 14:32:07: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 14:32:17: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.05_peaks.xls INFO @ Mon, 10 Aug 2020 14:32:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.05_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 14:32:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.05_summits.bed INFO @ Mon, 10 Aug 2020 14:32:17: Done! pass1 - making usageList (80 chroms): 2 millis pass2 - checking and writing primary data (6174 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 14:32:34: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 14:33:07: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.10_peaks.xls INFO @ Mon, 10 Aug 2020 14:33:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.10_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 14:33:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.10_summits.bed INFO @ Mon, 10 Aug 2020 14:33:07: Done! pass1 - making usageList (55 chroms): 1 millis pass2 - checking and writing primary data (2411 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 14:33:32: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.20_peaks.xls INFO @ Mon, 10 Aug 2020 14:33:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.20_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 14:33:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047601/SRX8047601.20_summits.bed INFO @ Mon, 10 Aug 2020 14:33:32: Done! pass1 - making usageList (40 chroms): 1 millis pass2 - checking and writing primary data (747 records, 4 fields): 3 millis CompletedMACS2peakCalling