Job ID = 8184501 SRX = SRX8047596 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-08-10T03:36:39 prefetch.2.10.7: 1) Downloading 'SRR11471320'... 2020-08-10T03:36:39 prefetch.2.10.7: Downloading via HTTPS... 2020-08-10T03:39:00 prefetch.2.10.7: HTTPS download succeed 2020-08-10T03:39:00 prefetch.2.10.7: 1) 'SRR11471320' was downloaded successfully Read 66988709 spots for SRR11471320/SRR11471320.sra Written 66988709 spots for SRR11471320/SRR11471320.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:19:31 66988709 reads; of these: 66988709 (100.00%) were unpaired; of these: 3599438 (5.37%) aligned 0 times 45756143 (68.30%) aligned exactly 1 time 17633128 (26.32%) aligned >1 times 94.63% overall alignment rate Time searching: 01:19:33 Overall time: 01:19:33 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 11129121 / 63389271 = 0.1756 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 14:17:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 14:17:18: #1 read tag files... INFO @ Mon, 10 Aug 2020 14:17:18: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 14:17:24: 1000000 INFO @ Mon, 10 Aug 2020 14:17:29: 2000000 INFO @ Mon, 10 Aug 2020 14:17:35: 3000000 INFO @ Mon, 10 Aug 2020 14:17:41: 4000000 INFO @ Mon, 10 Aug 2020 14:17:46: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 14:17:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 14:17:48: #1 read tag files... INFO @ Mon, 10 Aug 2020 14:17:48: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 14:17:52: 6000000 INFO @ Mon, 10 Aug 2020 14:17:56: 1000000 INFO @ Mon, 10 Aug 2020 14:17:59: 7000000 INFO @ Mon, 10 Aug 2020 14:18:03: 2000000 INFO @ Mon, 10 Aug 2020 14:18:05: 8000000 INFO @ Mon, 10 Aug 2020 14:18:10: 3000000 INFO @ Mon, 10 Aug 2020 14:18:12: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 14:18:18: 4000000 INFO @ Mon, 10 Aug 2020 14:18:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 14:18:18: #1 read tag files... INFO @ Mon, 10 Aug 2020 14:18:18: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 14:18:19: 10000000 INFO @ Mon, 10 Aug 2020 14:18:25: 5000000 INFO @ Mon, 10 Aug 2020 14:18:25: 11000000 INFO @ Mon, 10 Aug 2020 14:18:25: 1000000 INFO @ Mon, 10 Aug 2020 14:18:32: 12000000 INFO @ Mon, 10 Aug 2020 14:18:33: 6000000 INFO @ Mon, 10 Aug 2020 14:18:33: 2000000 INFO @ Mon, 10 Aug 2020 14:18:38: 13000000 INFO @ Mon, 10 Aug 2020 14:18:40: 7000000 INFO @ Mon, 10 Aug 2020 14:18:40: 3000000 INFO @ Mon, 10 Aug 2020 14:18:45: 14000000 INFO @ Mon, 10 Aug 2020 14:18:47: 8000000 INFO @ Mon, 10 Aug 2020 14:18:47: 4000000 INFO @ Mon, 10 Aug 2020 14:18:52: 15000000 INFO @ Mon, 10 Aug 2020 14:18:54: 9000000 INFO @ Mon, 10 Aug 2020 14:18:55: 5000000 INFO @ Mon, 10 Aug 2020 14:18:58: 16000000 INFO @ Mon, 10 Aug 2020 14:19:01: 10000000 INFO @ Mon, 10 Aug 2020 14:19:02: 6000000 INFO @ Mon, 10 Aug 2020 14:19:05: 17000000 INFO @ Mon, 10 Aug 2020 14:19:08: 11000000 INFO @ Mon, 10 Aug 2020 14:19:09: 7000000 INFO @ Mon, 10 Aug 2020 14:19:11: 18000000 INFO @ Mon, 10 Aug 2020 14:19:15: 12000000 INFO @ Mon, 10 Aug 2020 14:19:16: 8000000 INFO @ Mon, 10 Aug 2020 14:19:18: 19000000 INFO @ Mon, 10 Aug 2020 14:19:22: 13000000 INFO @ Mon, 10 Aug 2020 14:19:23: 9000000 INFO @ Mon, 10 Aug 2020 14:19:25: 20000000 INFO @ Mon, 10 Aug 2020 14:19:30: 14000000 INFO @ Mon, 10 Aug 2020 14:19:31: 10000000 INFO @ Mon, 10 Aug 2020 14:19:31: 21000000 INFO @ Mon, 10 Aug 2020 14:19:37: 15000000 INFO @ Mon, 10 Aug 2020 14:19:38: 22000000 INFO @ Mon, 10 Aug 2020 14:19:38: 11000000 INFO @ Mon, 10 Aug 2020 14:19:44: 23000000 INFO @ Mon, 10 Aug 2020 14:19:45: 16000000 INFO @ Mon, 10 Aug 2020 14:19:46: 12000000 INFO @ Mon, 10 Aug 2020 14:19:51: 24000000 INFO @ Mon, 10 Aug 2020 14:19:52: 17000000 INFO @ Mon, 10 Aug 2020 14:19:53: 13000000 INFO @ Mon, 10 Aug 2020 14:19:57: 25000000 INFO @ Mon, 10 Aug 2020 14:20:00: 18000000 INFO @ Mon, 10 Aug 2020 14:20:01: 14000000 INFO @ Mon, 10 Aug 2020 14:20:04: 26000000 INFO @ Mon, 10 Aug 2020 14:20:07: 19000000 INFO @ Mon, 10 Aug 2020 14:20:08: 15000000 INFO @ Mon, 10 Aug 2020 14:20:11: 27000000 INFO @ Mon, 10 Aug 2020 14:20:14: 20000000 INFO @ Mon, 10 Aug 2020 14:20:16: 16000000 INFO @ Mon, 10 Aug 2020 14:20:17: 28000000 INFO @ Mon, 10 Aug 2020 14:20:22: 21000000 INFO @ Mon, 10 Aug 2020 14:20:23: 17000000 INFO @ Mon, 10 Aug 2020 14:20:24: 29000000 INFO @ Mon, 10 Aug 2020 14:20:29: 22000000 INFO @ Mon, 10 Aug 2020 14:20:30: 30000000 INFO @ Mon, 10 Aug 2020 14:20:31: 18000000 INFO @ Mon, 10 Aug 2020 14:20:36: 23000000 INFO @ Mon, 10 Aug 2020 14:20:37: 31000000 INFO @ Mon, 10 Aug 2020 14:20:38: 19000000 INFO @ Mon, 10 Aug 2020 14:20:43: 32000000 INFO @ Mon, 10 Aug 2020 14:20:44: 24000000 INFO @ Mon, 10 Aug 2020 14:20:45: 20000000 INFO @ Mon, 10 Aug 2020 14:20:50: 33000000 INFO @ Mon, 10 Aug 2020 14:20:51: 25000000 INFO @ Mon, 10 Aug 2020 14:20:53: 21000000 INFO @ Mon, 10 Aug 2020 14:20:56: 34000000 INFO @ Mon, 10 Aug 2020 14:20:59: 26000000 INFO @ Mon, 10 Aug 2020 14:21:00: 22000000 INFO @ Mon, 10 Aug 2020 14:21:03: 35000000 INFO @ Mon, 10 Aug 2020 14:21:06: 27000000 INFO @ Mon, 10 Aug 2020 14:21:08: 23000000 INFO @ Mon, 10 Aug 2020 14:21:10: 36000000 INFO @ Mon, 10 Aug 2020 14:21:13: 28000000 INFO @ Mon, 10 Aug 2020 14:21:15: 24000000 INFO @ Mon, 10 Aug 2020 14:21:16: 37000000 INFO @ Mon, 10 Aug 2020 14:21:21: 29000000 INFO @ Mon, 10 Aug 2020 14:21:22: 25000000 INFO @ Mon, 10 Aug 2020 14:21:23: 38000000 INFO @ Mon, 10 Aug 2020 14:21:28: 30000000 INFO @ Mon, 10 Aug 2020 14:21:29: 26000000 INFO @ Mon, 10 Aug 2020 14:21:30: 39000000 INFO @ Mon, 10 Aug 2020 14:21:36: 31000000 INFO @ Mon, 10 Aug 2020 14:21:36: 40000000 INFO @ Mon, 10 Aug 2020 14:21:36: 27000000 INFO @ Mon, 10 Aug 2020 14:21:43: 32000000 INFO @ Mon, 10 Aug 2020 14:21:43: 41000000 INFO @ Mon, 10 Aug 2020 14:21:44: 28000000 INFO @ Mon, 10 Aug 2020 14:21:50: 42000000 INFO @ Mon, 10 Aug 2020 14:21:50: 33000000 INFO @ Mon, 10 Aug 2020 14:21:51: 29000000 INFO @ Mon, 10 Aug 2020 14:21:56: 43000000 INFO @ Mon, 10 Aug 2020 14:21:58: 34000000 INFO @ Mon, 10 Aug 2020 14:21:58: 30000000 INFO @ Mon, 10 Aug 2020 14:22:03: 44000000 INFO @ Mon, 10 Aug 2020 14:22:05: 31000000 INFO @ Mon, 10 Aug 2020 14:22:05: 35000000 INFO @ Mon, 10 Aug 2020 14:22:09: 45000000 INFO @ Mon, 10 Aug 2020 14:22:12: 32000000 INFO @ Mon, 10 Aug 2020 14:22:12: 36000000 INFO @ Mon, 10 Aug 2020 14:22:16: 46000000 INFO @ Mon, 10 Aug 2020 14:22:19: 33000000 INFO @ Mon, 10 Aug 2020 14:22:20: 37000000 INFO @ Mon, 10 Aug 2020 14:22:23: 47000000 INFO @ Mon, 10 Aug 2020 14:22:26: 34000000 INFO @ Mon, 10 Aug 2020 14:22:27: 38000000 INFO @ Mon, 10 Aug 2020 14:22:29: 48000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 10 Aug 2020 14:22:34: 35000000 INFO @ Mon, 10 Aug 2020 14:22:35: 39000000 INFO @ Mon, 10 Aug 2020 14:22:36: 49000000 INFO @ Mon, 10 Aug 2020 14:22:41: 36000000 INFO @ Mon, 10 Aug 2020 14:22:42: 40000000 INFO @ Mon, 10 Aug 2020 14:22:43: 50000000 INFO @ Mon, 10 Aug 2020 14:22:48: 37000000 INFO @ Mon, 10 Aug 2020 14:22:50: 41000000 INFO @ Mon, 10 Aug 2020 14:22:50: 51000000 INFO @ Mon, 10 Aug 2020 14:22:56: 38000000 INFO @ Mon, 10 Aug 2020 14:22:57: 52000000 INFO @ Mon, 10 Aug 2020 14:22:57: 42000000 INFO @ Mon, 10 Aug 2020 14:22:59: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 14:22:59: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 14:22:59: #1 total tags in treatment: 52260150 INFO @ Mon, 10 Aug 2020 14:22:59: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 14:22:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 14:23:00: #1 tags after filtering in treatment: 52260086 INFO @ Mon, 10 Aug 2020 14:23:00: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 14:23:00: #1 finished! INFO @ Mon, 10 Aug 2020 14:23:00: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 14:23:00: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 14:23:03: 39000000 INFO @ Mon, 10 Aug 2020 14:23:04: #2 number of paired peaks: 9252 INFO @ Mon, 10 Aug 2020 14:23:04: start model_add_line... INFO @ Mon, 10 Aug 2020 14:23:04: start X-correlation... INFO @ Mon, 10 Aug 2020 14:23:04: end of X-cor INFO @ Mon, 10 Aug 2020 14:23:04: #2 finished! INFO @ Mon, 10 Aug 2020 14:23:04: #2 predicted fragment length is 58 bps INFO @ Mon, 10 Aug 2020 14:23:04: #2 alternative fragment length(s) may be 58 bps INFO @ Mon, 10 Aug 2020 14:23:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.05_model.r WARNING @ Mon, 10 Aug 2020 14:23:04: #2 Since the d (58) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 14:23:04: #2 You may need to consider one of the other alternative d(s): 58 WARNING @ Mon, 10 Aug 2020 14:23:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 14:23:04: #3 Call peaks... INFO @ Mon, 10 Aug 2020 14:23:04: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 14:23:05: 43000000 INFO @ Mon, 10 Aug 2020 14:23:11: 40000000 INFO @ Mon, 10 Aug 2020 14:23:12: 44000000 INFO @ Mon, 10 Aug 2020 14:23:18: 41000000 INFO @ Mon, 10 Aug 2020 14:23:20: 45000000 INFO @ Mon, 10 Aug 2020 14:23:26: 42000000 INFO @ Mon, 10 Aug 2020 14:23:27: 46000000 INFO @ Mon, 10 Aug 2020 14:23:33: 43000000 INFO @ Mon, 10 Aug 2020 14:23:35: 47000000 INFO @ Mon, 10 Aug 2020 14:23:41: 44000000 INFO @ Mon, 10 Aug 2020 14:23:42: 48000000 INFO @ Mon, 10 Aug 2020 14:23:48: 45000000 INFO @ Mon, 10 Aug 2020 14:23:50: 49000000 INFO @ Mon, 10 Aug 2020 14:23:55: 46000000 INFO @ Mon, 10 Aug 2020 14:23:57: 50000000 INFO @ Mon, 10 Aug 2020 14:24:02: 47000000 INFO @ Mon, 10 Aug 2020 14:24:05: 51000000 INFO @ Mon, 10 Aug 2020 14:24:09: 48000000 INFO @ Mon, 10 Aug 2020 14:24:12: 52000000 INFO @ Mon, 10 Aug 2020 14:24:15: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 14:24:15: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 14:24:15: #1 total tags in treatment: 52260150 INFO @ Mon, 10 Aug 2020 14:24:15: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 14:24:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 14:24:16: #1 tags after filtering in treatment: 52260086 INFO @ Mon, 10 Aug 2020 14:24:16: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 14:24:16: #1 finished! INFO @ Mon, 10 Aug 2020 14:24:16: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 14:24:16: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 14:24:16: 49000000 INFO @ Mon, 10 Aug 2020 14:24:20: #2 number of paired peaks: 9252 INFO @ Mon, 10 Aug 2020 14:24:20: start model_add_line... INFO @ Mon, 10 Aug 2020 14:24:20: start X-correlation... INFO @ Mon, 10 Aug 2020 14:24:20: end of X-cor INFO @ Mon, 10 Aug 2020 14:24:20: #2 finished! INFO @ Mon, 10 Aug 2020 14:24:20: #2 predicted fragment length is 58 bps INFO @ Mon, 10 Aug 2020 14:24:20: #2 alternative fragment length(s) may be 58 bps INFO @ Mon, 10 Aug 2020 14:24:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.10_model.r WARNING @ Mon, 10 Aug 2020 14:24:20: #2 Since the d (58) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 14:24:20: #2 You may need to consider one of the other alternative d(s): 58 WARNING @ Mon, 10 Aug 2020 14:24:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 14:24:20: #3 Call peaks... INFO @ Mon, 10 Aug 2020 14:24:20: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 14:24:23: 50000000 INFO @ Mon, 10 Aug 2020 14:24:30: 51000000 INFO @ Mon, 10 Aug 2020 14:24:37: 52000000 INFO @ Mon, 10 Aug 2020 14:24:39: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 14:24:39: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 14:24:39: #1 total tags in treatment: 52260150 INFO @ Mon, 10 Aug 2020 14:24:39: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 14:24:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 14:24:40: #1 tags after filtering in treatment: 52260086 INFO @ Mon, 10 Aug 2020 14:24:40: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 14:24:40: #1 finished! INFO @ Mon, 10 Aug 2020 14:24:40: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 14:24:40: #2 looking for paired plus/minus strand peaks... BigWig に変換しました。 INFO @ Mon, 10 Aug 2020 14:24:44: #2 number of paired peaks: 9252 INFO @ Mon, 10 Aug 2020 14:24:44: start model_add_line... INFO @ Mon, 10 Aug 2020 14:24:44: start X-correlation... INFO @ Mon, 10 Aug 2020 14:24:44: end of X-cor INFO @ Mon, 10 Aug 2020 14:24:44: #2 finished! INFO @ Mon, 10 Aug 2020 14:24:44: #2 predicted fragment length is 58 bps INFO @ Mon, 10 Aug 2020 14:24:44: #2 alternative fragment length(s) may be 58 bps INFO @ Mon, 10 Aug 2020 14:24:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.20_model.r WARNING @ Mon, 10 Aug 2020 14:24:44: #2 Since the d (58) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 14:24:44: #2 You may need to consider one of the other alternative d(s): 58 WARNING @ Mon, 10 Aug 2020 14:24:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 14:24:44: #3 Call peaks... INFO @ Mon, 10 Aug 2020 14:24:44: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 14:24:51: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 14:25:49: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.05_peaks.xls INFO @ Mon, 10 Aug 2020 14:25:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.05_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 14:25:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.05_summits.bed INFO @ Mon, 10 Aug 2020 14:25:49: Done! pass1 - making usageList (118 chroms): 4 millis pass2 - checking and writing primary data (21101 records, 4 fields): 22 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 14:26:08: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 14:26:32: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 14:27:05: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.10_peaks.xls INFO @ Mon, 10 Aug 2020 14:27:05: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.10_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 14:27:05: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.10_summits.bed INFO @ Mon, 10 Aug 2020 14:27:05: Done! pass1 - making usageList (77 chroms): 2 millis pass2 - checking and writing primary data (7086 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 14:27:29: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.20_peaks.xls INFO @ Mon, 10 Aug 2020 14:27:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.20_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 14:27:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047596/SRX8047596.20_summits.bed INFO @ Mon, 10 Aug 2020 14:27:30: Done! pass1 - making usageList (42 chroms): 0 millis pass2 - checking and writing primary data (1824 records, 4 fields): 5 millis CompletedMACS2peakCalling