Job ID = 8184447 SRX = SRX8047592 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-08-10T03:20:46 prefetch.2.10.7: 1) Downloading 'SRR11471316'... 2020-08-10T03:20:46 prefetch.2.10.7: Downloading via HTTPS... 2020-08-10T03:23:53 prefetch.2.10.7: HTTPS download succeed 2020-08-10T03:23:53 prefetch.2.10.7: 1) 'SRR11471316' was downloaded successfully Read 64536131 spots for SRR11471316/SRR11471316.sra Written 64536131 spots for SRR11471316/SRR11471316.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:51:39 64536131 reads; of these: 64536131 (100.00%) were unpaired; of these: 1430900 (2.22%) aligned 0 times 45547020 (70.58%) aligned exactly 1 time 17558211 (27.21%) aligned >1 times 97.78% overall alignment rate Time searching: 00:51:41 Overall time: 00:51:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 2744243 / 63105231 = 0.0435 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:36:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:36:53: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:36:53: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:37:00: 1000000 INFO @ Mon, 10 Aug 2020 13:37:07: 2000000 INFO @ Mon, 10 Aug 2020 13:37:13: 3000000 INFO @ Mon, 10 Aug 2020 13:37:20: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:37:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:37:23: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:37:23: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:37:27: 5000000 INFO @ Mon, 10 Aug 2020 13:37:30: 1000000 INFO @ Mon, 10 Aug 2020 13:37:34: 6000000 INFO @ Mon, 10 Aug 2020 13:37:36: 2000000 INFO @ Mon, 10 Aug 2020 13:37:41: 7000000 INFO @ Mon, 10 Aug 2020 13:37:43: 3000000 INFO @ Mon, 10 Aug 2020 13:37:48: 8000000 INFO @ Mon, 10 Aug 2020 13:37:49: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:37:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:37:53: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:37:53: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:37:55: 9000000 INFO @ Mon, 10 Aug 2020 13:37:56: 5000000 INFO @ Mon, 10 Aug 2020 13:38:00: 1000000 INFO @ Mon, 10 Aug 2020 13:38:02: 10000000 INFO @ Mon, 10 Aug 2020 13:38:02: 6000000 INFO @ Mon, 10 Aug 2020 13:38:08: 2000000 INFO @ Mon, 10 Aug 2020 13:38:09: 7000000 INFO @ Mon, 10 Aug 2020 13:38:09: 11000000 INFO @ Mon, 10 Aug 2020 13:38:15: 3000000 INFO @ Mon, 10 Aug 2020 13:38:16: 8000000 INFO @ Mon, 10 Aug 2020 13:38:17: 12000000 INFO @ Mon, 10 Aug 2020 13:38:22: 4000000 INFO @ Mon, 10 Aug 2020 13:38:22: 9000000 INFO @ Mon, 10 Aug 2020 13:38:24: 13000000 INFO @ Mon, 10 Aug 2020 13:38:29: 10000000 INFO @ Mon, 10 Aug 2020 13:38:29: 5000000 INFO @ Mon, 10 Aug 2020 13:38:31: 14000000 INFO @ Mon, 10 Aug 2020 13:38:35: 11000000 INFO @ Mon, 10 Aug 2020 13:38:36: 6000000 INFO @ Mon, 10 Aug 2020 13:38:38: 15000000 INFO @ Mon, 10 Aug 2020 13:38:42: 12000000 INFO @ Mon, 10 Aug 2020 13:38:43: 7000000 INFO @ Mon, 10 Aug 2020 13:38:45: 16000000 INFO @ Mon, 10 Aug 2020 13:38:49: 13000000 INFO @ Mon, 10 Aug 2020 13:38:50: 8000000 INFO @ Mon, 10 Aug 2020 13:38:52: 17000000 INFO @ Mon, 10 Aug 2020 13:38:55: 14000000 INFO @ Mon, 10 Aug 2020 13:38:58: 9000000 INFO @ Mon, 10 Aug 2020 13:38:59: 18000000 INFO @ Mon, 10 Aug 2020 13:39:02: 15000000 INFO @ Mon, 10 Aug 2020 13:39:05: 10000000 INFO @ Mon, 10 Aug 2020 13:39:07: 19000000 INFO @ Mon, 10 Aug 2020 13:39:08: 16000000 INFO @ Mon, 10 Aug 2020 13:39:12: 11000000 INFO @ Mon, 10 Aug 2020 13:39:14: 20000000 INFO @ Mon, 10 Aug 2020 13:39:15: 17000000 INFO @ Mon, 10 Aug 2020 13:39:19: 12000000 INFO @ Mon, 10 Aug 2020 13:39:21: 21000000 INFO @ Mon, 10 Aug 2020 13:39:21: 18000000 INFO @ Mon, 10 Aug 2020 13:39:27: 13000000 INFO @ Mon, 10 Aug 2020 13:39:28: 19000000 INFO @ Mon, 10 Aug 2020 13:39:28: 22000000 INFO @ Mon, 10 Aug 2020 13:39:34: 14000000 INFO @ Mon, 10 Aug 2020 13:39:35: 20000000 INFO @ Mon, 10 Aug 2020 13:39:35: 23000000 INFO @ Mon, 10 Aug 2020 13:39:41: 15000000 INFO @ Mon, 10 Aug 2020 13:39:41: 21000000 INFO @ Mon, 10 Aug 2020 13:39:42: 24000000 INFO @ Mon, 10 Aug 2020 13:39:48: 22000000 INFO @ Mon, 10 Aug 2020 13:39:48: 16000000 INFO @ Mon, 10 Aug 2020 13:39:49: 25000000 INFO @ Mon, 10 Aug 2020 13:39:54: 23000000 INFO @ Mon, 10 Aug 2020 13:39:55: 17000000 INFO @ Mon, 10 Aug 2020 13:39:57: 26000000 INFO @ Mon, 10 Aug 2020 13:40:01: 24000000 INFO @ Mon, 10 Aug 2020 13:40:02: 18000000 INFO @ Mon, 10 Aug 2020 13:40:04: 27000000 INFO @ Mon, 10 Aug 2020 13:40:07: 25000000 INFO @ Mon, 10 Aug 2020 13:40:09: 19000000 INFO @ Mon, 10 Aug 2020 13:40:11: 28000000 INFO @ Mon, 10 Aug 2020 13:40:14: 26000000 INFO @ Mon, 10 Aug 2020 13:40:17: 20000000 INFO @ Mon, 10 Aug 2020 13:40:18: 29000000 INFO @ Mon, 10 Aug 2020 13:40:21: 27000000 INFO @ Mon, 10 Aug 2020 13:40:24: 21000000 INFO @ Mon, 10 Aug 2020 13:40:25: 30000000 INFO @ Mon, 10 Aug 2020 13:40:27: 28000000 INFO @ Mon, 10 Aug 2020 13:40:31: 22000000 INFO @ Mon, 10 Aug 2020 13:40:32: 31000000 INFO @ Mon, 10 Aug 2020 13:40:34: 29000000 INFO @ Mon, 10 Aug 2020 13:40:38: 23000000 INFO @ Mon, 10 Aug 2020 13:40:39: 32000000 INFO @ Mon, 10 Aug 2020 13:40:40: 30000000 INFO @ Mon, 10 Aug 2020 13:40:45: 24000000 INFO @ Mon, 10 Aug 2020 13:40:47: 33000000 INFO @ Mon, 10 Aug 2020 13:40:47: 31000000 INFO @ Mon, 10 Aug 2020 13:40:52: 25000000 INFO @ Mon, 10 Aug 2020 13:40:54: 32000000 INFO @ Mon, 10 Aug 2020 13:40:54: 34000000 INFO @ Mon, 10 Aug 2020 13:40:59: 26000000 INFO @ Mon, 10 Aug 2020 13:41:00: 33000000 INFO @ Mon, 10 Aug 2020 13:41:01: 35000000 INFO @ Mon, 10 Aug 2020 13:41:06: 27000000 INFO @ Mon, 10 Aug 2020 13:41:07: 34000000 INFO @ Mon, 10 Aug 2020 13:41:08: 36000000 INFO @ Mon, 10 Aug 2020 13:41:13: 28000000 INFO @ Mon, 10 Aug 2020 13:41:13: 35000000 INFO @ Mon, 10 Aug 2020 13:41:15: 37000000 INFO @ Mon, 10 Aug 2020 13:41:20: 36000000 INFO @ Mon, 10 Aug 2020 13:41:20: 29000000 INFO @ Mon, 10 Aug 2020 13:41:22: 38000000 INFO @ Mon, 10 Aug 2020 13:41:27: 37000000 INFO @ Mon, 10 Aug 2020 13:41:28: 30000000 INFO @ Mon, 10 Aug 2020 13:41:29: 39000000 INFO @ Mon, 10 Aug 2020 13:41:34: 38000000 INFO @ Mon, 10 Aug 2020 13:41:35: 31000000 INFO @ Mon, 10 Aug 2020 13:41:37: 40000000 INFO @ Mon, 10 Aug 2020 13:41:40: 39000000 INFO @ Mon, 10 Aug 2020 13:41:42: 32000000 INFO @ Mon, 10 Aug 2020 13:41:44: 41000000 INFO @ Mon, 10 Aug 2020 13:41:47: 40000000 INFO @ Mon, 10 Aug 2020 13:41:49: 33000000 INFO @ Mon, 10 Aug 2020 13:41:51: 42000000 INFO @ Mon, 10 Aug 2020 13:41:53: 41000000 INFO @ Mon, 10 Aug 2020 13:41:56: 34000000 INFO @ Mon, 10 Aug 2020 13:41:58: 43000000 INFO @ Mon, 10 Aug 2020 13:42:00: 42000000 INFO @ Mon, 10 Aug 2020 13:42:03: 35000000 INFO @ Mon, 10 Aug 2020 13:42:05: 44000000 INFO @ Mon, 10 Aug 2020 13:42:07: 43000000 INFO @ Mon, 10 Aug 2020 13:42:10: 36000000 INFO @ Mon, 10 Aug 2020 13:42:13: 45000000 INFO @ Mon, 10 Aug 2020 13:42:13: 44000000 INFO @ Mon, 10 Aug 2020 13:42:17: 37000000 INFO @ Mon, 10 Aug 2020 13:42:20: 46000000 INFO @ Mon, 10 Aug 2020 13:42:20: 45000000 INFO @ Mon, 10 Aug 2020 13:42:24: 38000000 INFO @ Mon, 10 Aug 2020 13:42:26: 46000000 INFO @ Mon, 10 Aug 2020 13:42:27: 47000000 INFO @ Mon, 10 Aug 2020 13:42:32: 39000000 INFO @ Mon, 10 Aug 2020 13:42:33: 47000000 INFO @ Mon, 10 Aug 2020 13:42:34: 48000000 INFO @ Mon, 10 Aug 2020 13:42:39: 40000000 INFO @ Mon, 10 Aug 2020 13:42:40: 48000000 INFO @ Mon, 10 Aug 2020 13:42:42: 49000000 INFO @ Mon, 10 Aug 2020 13:42:46: 41000000 INFO @ Mon, 10 Aug 2020 13:42:46: 49000000 INFO @ Mon, 10 Aug 2020 13:42:49: 50000000 INFO @ Mon, 10 Aug 2020 13:42:53: 42000000 INFO @ Mon, 10 Aug 2020 13:42:53: 50000000 INFO @ Mon, 10 Aug 2020 13:42:56: 51000000 INFO @ Mon, 10 Aug 2020 13:42:59: 51000000 INFO @ Mon, 10 Aug 2020 13:43:00: 43000000 INFO @ Mon, 10 Aug 2020 13:43:03: 52000000 INFO @ Mon, 10 Aug 2020 13:43:06: 52000000 INFO @ Mon, 10 Aug 2020 13:43:07: 44000000 INFO @ Mon, 10 Aug 2020 13:43:11: 53000000 INFO @ Mon, 10 Aug 2020 13:43:13: 53000000 INFO @ Mon, 10 Aug 2020 13:43:14: 45000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 10 Aug 2020 13:43:18: 54000000 INFO @ Mon, 10 Aug 2020 13:43:20: 54000000 INFO @ Mon, 10 Aug 2020 13:43:22: 46000000 INFO @ Mon, 10 Aug 2020 13:43:25: 55000000 INFO @ Mon, 10 Aug 2020 13:43:26: 55000000 INFO @ Mon, 10 Aug 2020 13:43:29: 47000000 INFO @ Mon, 10 Aug 2020 13:43:33: 56000000 INFO @ Mon, 10 Aug 2020 13:43:33: 56000000 INFO @ Mon, 10 Aug 2020 13:43:36: 48000000 INFO @ Mon, 10 Aug 2020 13:43:40: 57000000 INFO @ Mon, 10 Aug 2020 13:43:41: 57000000 INFO @ Mon, 10 Aug 2020 13:43:43: 49000000 INFO @ Mon, 10 Aug 2020 13:43:48: 58000000 INFO @ Mon, 10 Aug 2020 13:43:48: 58000000 INFO @ Mon, 10 Aug 2020 13:43:50: 50000000 INFO @ Mon, 10 Aug 2020 13:43:55: 59000000 INFO @ Mon, 10 Aug 2020 13:43:55: 59000000 INFO @ Mon, 10 Aug 2020 13:43:57: 51000000 INFO @ Mon, 10 Aug 2020 13:44:02: 60000000 INFO @ Mon, 10 Aug 2020 13:44:03: 60000000 INFO @ Mon, 10 Aug 2020 13:44:04: 52000000 INFO @ Mon, 10 Aug 2020 13:44:06: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:44:06: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:44:06: #1 total tags in treatment: 60360988 INFO @ Mon, 10 Aug 2020 13:44:06: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:44:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:44:06: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:44:06: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:44:06: #1 total tags in treatment: 60360988 INFO @ Mon, 10 Aug 2020 13:44:06: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:44:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:44:07: #1 tags after filtering in treatment: 60360938 INFO @ Mon, 10 Aug 2020 13:44:07: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:44:07: #1 finished! INFO @ Mon, 10 Aug 2020 13:44:07: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:44:07: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:44:07: #1 tags after filtering in treatment: 60360938 INFO @ Mon, 10 Aug 2020 13:44:07: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:44:07: #1 finished! INFO @ Mon, 10 Aug 2020 13:44:07: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:44:07: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:44:11: 53000000 INFO @ Mon, 10 Aug 2020 13:44:12: #2 number of paired peaks: 5235 INFO @ Mon, 10 Aug 2020 13:44:12: start model_add_line... INFO @ Mon, 10 Aug 2020 13:44:13: start X-correlation... INFO @ Mon, 10 Aug 2020 13:44:13: end of X-cor INFO @ Mon, 10 Aug 2020 13:44:13: #2 finished! INFO @ Mon, 10 Aug 2020 13:44:13: #2 predicted fragment length is 52 bps INFO @ Mon, 10 Aug 2020 13:44:13: #2 alternative fragment length(s) may be 52 bps INFO @ Mon, 10 Aug 2020 13:44:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.05_model.r WARNING @ Mon, 10 Aug 2020 13:44:13: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 13:44:13: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Mon, 10 Aug 2020 13:44:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 13:44:13: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:44:13: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 13:44:13: #2 number of paired peaks: 5235 INFO @ Mon, 10 Aug 2020 13:44:13: start model_add_line... INFO @ Mon, 10 Aug 2020 13:44:13: start X-correlation... INFO @ Mon, 10 Aug 2020 13:44:13: end of X-cor INFO @ Mon, 10 Aug 2020 13:44:13: #2 finished! INFO @ Mon, 10 Aug 2020 13:44:13: #2 predicted fragment length is 52 bps INFO @ Mon, 10 Aug 2020 13:44:13: #2 alternative fragment length(s) may be 52 bps INFO @ Mon, 10 Aug 2020 13:44:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.10_model.r WARNING @ Mon, 10 Aug 2020 13:44:13: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 13:44:13: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Mon, 10 Aug 2020 13:44:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 13:44:13: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:44:13: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 13:44:18: 54000000 INFO @ Mon, 10 Aug 2020 13:44:25: 55000000 INFO @ Mon, 10 Aug 2020 13:44:31: 56000000 INFO @ Mon, 10 Aug 2020 13:44:38: 57000000 INFO @ Mon, 10 Aug 2020 13:44:45: 58000000 INFO @ Mon, 10 Aug 2020 13:44:52: 59000000 INFO @ Mon, 10 Aug 2020 13:44:58: 60000000 INFO @ Mon, 10 Aug 2020 13:45:01: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:45:01: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:45:01: #1 total tags in treatment: 60360988 INFO @ Mon, 10 Aug 2020 13:45:01: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:45:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:45:03: #1 tags after filtering in treatment: 60360938 INFO @ Mon, 10 Aug 2020 13:45:03: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:45:03: #1 finished! INFO @ Mon, 10 Aug 2020 13:45:03: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:45:03: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:45:08: #2 number of paired peaks: 5235 INFO @ Mon, 10 Aug 2020 13:45:08: start model_add_line... INFO @ Mon, 10 Aug 2020 13:45:08: start X-correlation... INFO @ Mon, 10 Aug 2020 13:45:08: end of X-cor INFO @ Mon, 10 Aug 2020 13:45:08: #2 finished! INFO @ Mon, 10 Aug 2020 13:45:08: #2 predicted fragment length is 52 bps INFO @ Mon, 10 Aug 2020 13:45:08: #2 alternative fragment length(s) may be 52 bps INFO @ Mon, 10 Aug 2020 13:45:08: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.20_model.r WARNING @ Mon, 10 Aug 2020 13:45:08: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 13:45:08: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Mon, 10 Aug 2020 13:45:08: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 13:45:08: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:45:08: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Mon, 10 Aug 2020 13:46:31: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:46:32: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:47:26: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:47:45: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.10_peaks.xls INFO @ Mon, 10 Aug 2020 13:47:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.10_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:47:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.10_summits.bed INFO @ Mon, 10 Aug 2020 13:47:45: Done! pass1 - making usageList (54 chroms): 0 millis pass2 - checking and writing primary data (1766 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 13:47:46: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.05_peaks.xls INFO @ Mon, 10 Aug 2020 13:47:46: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.05_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:47:46: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.05_summits.bed INFO @ Mon, 10 Aug 2020 13:47:46: Done! pass1 - making usageList (63 chroms): 2 millis pass2 - checking and writing primary data (3735 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 13:48:41: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.20_peaks.xls INFO @ Mon, 10 Aug 2020 13:48:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.20_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:48:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047592/SRX8047592.20_summits.bed INFO @ Mon, 10 Aug 2020 13:48:41: Done! pass1 - making usageList (40 chroms): 1 millis pass2 - checking and writing primary data (788 records, 4 fields): 4 millis CompletedMACS2peakCalling