Job ID = 8184446 SRX = SRX8047591 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-08-10T03:19:57 prefetch.2.10.7: 1) Downloading 'SRR11471315'... 2020-08-10T03:19:57 prefetch.2.10.7: Downloading via HTTPS... 2020-08-10T03:23:23 prefetch.2.10.7: HTTPS download succeed 2020-08-10T03:23:23 prefetch.2.10.7: 1) 'SRR11471315' was downloaded successfully Read 62436589 spots for SRR11471315/SRR11471315.sra Written 62436589 spots for SRR11471315/SRR11471315.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:47:40 62436589 reads; of these: 62436589 (100.00%) were unpaired; of these: 1324616 (2.12%) aligned 0 times 44168916 (70.74%) aligned exactly 1 time 16943057 (27.14%) aligned >1 times 97.88% overall alignment rate Time searching: 00:47:43 Overall time: 00:47:43 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 2510580 / 61111973 = 0.0411 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:29:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:29:58: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:29:58: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:30:03: 1000000 INFO @ Mon, 10 Aug 2020 13:30:09: 2000000 INFO @ Mon, 10 Aug 2020 13:30:15: 3000000 INFO @ Mon, 10 Aug 2020 13:30:20: 4000000 INFO @ Mon, 10 Aug 2020 13:30:26: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:30:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:30:28: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:30:28: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:30:32: 6000000 INFO @ Mon, 10 Aug 2020 13:30:36: 1000000 INFO @ Mon, 10 Aug 2020 13:30:39: 7000000 INFO @ Mon, 10 Aug 2020 13:30:44: 2000000 INFO @ Mon, 10 Aug 2020 13:30:46: 8000000 INFO @ Mon, 10 Aug 2020 13:30:52: 3000000 INFO @ Mon, 10 Aug 2020 13:30:52: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:30:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:30:58: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:30:58: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:30:59: 10000000 INFO @ Mon, 10 Aug 2020 13:31:00: 4000000 INFO @ Mon, 10 Aug 2020 13:31:06: 1000000 INFO @ Mon, 10 Aug 2020 13:31:06: 11000000 INFO @ Mon, 10 Aug 2020 13:31:07: 5000000 INFO @ Mon, 10 Aug 2020 13:31:13: 12000000 INFO @ Mon, 10 Aug 2020 13:31:13: 2000000 INFO @ Mon, 10 Aug 2020 13:31:15: 6000000 INFO @ Mon, 10 Aug 2020 13:31:20: 13000000 INFO @ Mon, 10 Aug 2020 13:31:21: 3000000 INFO @ Mon, 10 Aug 2020 13:31:23: 7000000 INFO @ Mon, 10 Aug 2020 13:31:26: 14000000 INFO @ Mon, 10 Aug 2020 13:31:29: 4000000 INFO @ Mon, 10 Aug 2020 13:31:30: 8000000 INFO @ Mon, 10 Aug 2020 13:31:33: 15000000 INFO @ Mon, 10 Aug 2020 13:31:37: 5000000 INFO @ Mon, 10 Aug 2020 13:31:38: 9000000 INFO @ Mon, 10 Aug 2020 13:31:40: 16000000 INFO @ Mon, 10 Aug 2020 13:31:44: 6000000 INFO @ Mon, 10 Aug 2020 13:31:45: 10000000 INFO @ Mon, 10 Aug 2020 13:31:47: 17000000 INFO @ Mon, 10 Aug 2020 13:31:52: 7000000 INFO @ Mon, 10 Aug 2020 13:31:53: 11000000 INFO @ Mon, 10 Aug 2020 13:31:54: 18000000 INFO @ Mon, 10 Aug 2020 13:31:59: 8000000 INFO @ Mon, 10 Aug 2020 13:32:01: 19000000 INFO @ Mon, 10 Aug 2020 13:32:01: 12000000 INFO @ Mon, 10 Aug 2020 13:32:07: 9000000 INFO @ Mon, 10 Aug 2020 13:32:08: 20000000 INFO @ Mon, 10 Aug 2020 13:32:08: 13000000 INFO @ Mon, 10 Aug 2020 13:32:14: 10000000 INFO @ Mon, 10 Aug 2020 13:32:15: 21000000 INFO @ Mon, 10 Aug 2020 13:32:16: 14000000 INFO @ Mon, 10 Aug 2020 13:32:21: 22000000 INFO @ Mon, 10 Aug 2020 13:32:22: 11000000 INFO @ Mon, 10 Aug 2020 13:32:24: 15000000 INFO @ Mon, 10 Aug 2020 13:32:28: 23000000 INFO @ Mon, 10 Aug 2020 13:32:29: 12000000 INFO @ Mon, 10 Aug 2020 13:32:31: 16000000 INFO @ Mon, 10 Aug 2020 13:32:35: 24000000 INFO @ Mon, 10 Aug 2020 13:32:37: 13000000 INFO @ Mon, 10 Aug 2020 13:32:39: 17000000 INFO @ Mon, 10 Aug 2020 13:32:42: 25000000 INFO @ Mon, 10 Aug 2020 13:32:44: 14000000 INFO @ Mon, 10 Aug 2020 13:32:47: 18000000 INFO @ Mon, 10 Aug 2020 13:32:49: 26000000 INFO @ Mon, 10 Aug 2020 13:32:52: 15000000 INFO @ Mon, 10 Aug 2020 13:32:55: 19000000 INFO @ Mon, 10 Aug 2020 13:32:55: 27000000 INFO @ Mon, 10 Aug 2020 13:33:00: 16000000 INFO @ Mon, 10 Aug 2020 13:33:02: 28000000 INFO @ Mon, 10 Aug 2020 13:33:02: 20000000 INFO @ Mon, 10 Aug 2020 13:33:08: 17000000 INFO @ Mon, 10 Aug 2020 13:33:09: 29000000 INFO @ Mon, 10 Aug 2020 13:33:10: 21000000 INFO @ Mon, 10 Aug 2020 13:33:15: 18000000 INFO @ Mon, 10 Aug 2020 13:33:16: 30000000 INFO @ Mon, 10 Aug 2020 13:33:18: 22000000 INFO @ Mon, 10 Aug 2020 13:33:23: 31000000 INFO @ Mon, 10 Aug 2020 13:33:23: 19000000 INFO @ Mon, 10 Aug 2020 13:33:25: 23000000 INFO @ Mon, 10 Aug 2020 13:33:30: 32000000 INFO @ Mon, 10 Aug 2020 13:33:31: 20000000 INFO @ Mon, 10 Aug 2020 13:33:33: 24000000 INFO @ Mon, 10 Aug 2020 13:33:37: 33000000 INFO @ Mon, 10 Aug 2020 13:33:39: 21000000 INFO @ Mon, 10 Aug 2020 13:33:40: 25000000 INFO @ Mon, 10 Aug 2020 13:33:44: 34000000 INFO @ Mon, 10 Aug 2020 13:33:46: 22000000 INFO @ Mon, 10 Aug 2020 13:33:48: 26000000 INFO @ Mon, 10 Aug 2020 13:33:51: 35000000 INFO @ Mon, 10 Aug 2020 13:33:54: 23000000 INFO @ Mon, 10 Aug 2020 13:33:56: 27000000 INFO @ Mon, 10 Aug 2020 13:33:58: 36000000 INFO @ Mon, 10 Aug 2020 13:34:01: 24000000 INFO @ Mon, 10 Aug 2020 13:34:04: 28000000 INFO @ Mon, 10 Aug 2020 13:34:04: 37000000 INFO @ Mon, 10 Aug 2020 13:34:09: 25000000 INFO @ Mon, 10 Aug 2020 13:34:11: 38000000 INFO @ Mon, 10 Aug 2020 13:34:12: 29000000 INFO @ Mon, 10 Aug 2020 13:34:16: 26000000 INFO @ Mon, 10 Aug 2020 13:34:18: 39000000 INFO @ Mon, 10 Aug 2020 13:34:21: 30000000 INFO @ Mon, 10 Aug 2020 13:34:24: 27000000 INFO @ Mon, 10 Aug 2020 13:34:25: 40000000 INFO @ Mon, 10 Aug 2020 13:34:29: 31000000 INFO @ Mon, 10 Aug 2020 13:34:32: 28000000 INFO @ Mon, 10 Aug 2020 13:34:32: 41000000 INFO @ Mon, 10 Aug 2020 13:34:37: 32000000 INFO @ Mon, 10 Aug 2020 13:34:39: 42000000 INFO @ Mon, 10 Aug 2020 13:34:39: 29000000 INFO @ Mon, 10 Aug 2020 13:34:45: 33000000 INFO @ Mon, 10 Aug 2020 13:34:46: 43000000 INFO @ Mon, 10 Aug 2020 13:34:47: 30000000 INFO @ Mon, 10 Aug 2020 13:34:53: 44000000 INFO @ Mon, 10 Aug 2020 13:34:54: 34000000 INFO @ Mon, 10 Aug 2020 13:34:55: 31000000 INFO @ Mon, 10 Aug 2020 13:35:00: 45000000 INFO @ Mon, 10 Aug 2020 13:35:02: 35000000 INFO @ Mon, 10 Aug 2020 13:35:02: 32000000 INFO @ Mon, 10 Aug 2020 13:35:07: 46000000 INFO @ Mon, 10 Aug 2020 13:35:10: 33000000 INFO @ Mon, 10 Aug 2020 13:35:10: 36000000 INFO @ Mon, 10 Aug 2020 13:35:14: 47000000 INFO @ Mon, 10 Aug 2020 13:35:18: 34000000 INFO @ Mon, 10 Aug 2020 13:35:19: 37000000 INFO @ Mon, 10 Aug 2020 13:35:21: 48000000 INFO @ Mon, 10 Aug 2020 13:35:25: 35000000 INFO @ Mon, 10 Aug 2020 13:35:27: 38000000 INFO @ Mon, 10 Aug 2020 13:35:28: 49000000 INFO @ Mon, 10 Aug 2020 13:35:33: 36000000 INFO @ Mon, 10 Aug 2020 13:35:35: 50000000 INFO @ Mon, 10 Aug 2020 13:35:35: 39000000 INFO @ Mon, 10 Aug 2020 13:35:41: 37000000 INFO @ Mon, 10 Aug 2020 13:35:42: 51000000 INFO @ Mon, 10 Aug 2020 13:35:43: 40000000 INFO @ Mon, 10 Aug 2020 13:35:48: 38000000 INFO @ Mon, 10 Aug 2020 13:35:48: 52000000 INFO @ Mon, 10 Aug 2020 13:35:52: 41000000 INFO @ Mon, 10 Aug 2020 13:35:55: 53000000 INFO @ Mon, 10 Aug 2020 13:35:56: 39000000 INFO @ Mon, 10 Aug 2020 13:36:00: 42000000 INFO @ Mon, 10 Aug 2020 13:36:02: 54000000 INFO @ Mon, 10 Aug 2020 13:36:03: 40000000 INFO @ Mon, 10 Aug 2020 13:36:08: 43000000 INFO @ Mon, 10 Aug 2020 13:36:09: 55000000 INFO @ Mon, 10 Aug 2020 13:36:11: 41000000 INFO @ Mon, 10 Aug 2020 13:36:16: 56000000 INFO @ Mon, 10 Aug 2020 13:36:17: 44000000 INFO @ Mon, 10 Aug 2020 13:36:19: 42000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 10 Aug 2020 13:36:23: 57000000 INFO @ Mon, 10 Aug 2020 13:36:25: 45000000 INFO @ Mon, 10 Aug 2020 13:36:26: 43000000 INFO @ Mon, 10 Aug 2020 13:36:30: 58000000 INFO @ Mon, 10 Aug 2020 13:36:33: 46000000 INFO @ Mon, 10 Aug 2020 13:36:34: 44000000 INFO @ Mon, 10 Aug 2020 13:36:35: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:36:35: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:36:35: #1 total tags in treatment: 58601393 INFO @ Mon, 10 Aug 2020 13:36:35: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:36:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:36:36: #1 tags after filtering in treatment: 58601345 INFO @ Mon, 10 Aug 2020 13:36:36: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:36:36: #1 finished! INFO @ Mon, 10 Aug 2020 13:36:36: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:36:36: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:36:40: #2 number of paired peaks: 5217 INFO @ Mon, 10 Aug 2020 13:36:40: start model_add_line... INFO @ Mon, 10 Aug 2020 13:36:41: start X-correlation... INFO @ Mon, 10 Aug 2020 13:36:41: end of X-cor INFO @ Mon, 10 Aug 2020 13:36:41: #2 finished! INFO @ Mon, 10 Aug 2020 13:36:41: #2 predicted fragment length is 52 bps INFO @ Mon, 10 Aug 2020 13:36:41: #2 alternative fragment length(s) may be 52 bps INFO @ Mon, 10 Aug 2020 13:36:41: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.05_model.r WARNING @ Mon, 10 Aug 2020 13:36:41: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 13:36:41: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Mon, 10 Aug 2020 13:36:41: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 13:36:41: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:36:41: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 13:36:42: 47000000 INFO @ Mon, 10 Aug 2020 13:36:42: 45000000 INFO @ Mon, 10 Aug 2020 13:36:49: 46000000 INFO @ Mon, 10 Aug 2020 13:36:50: 48000000 INFO @ Mon, 10 Aug 2020 13:36:57: 47000000 INFO @ Mon, 10 Aug 2020 13:36:58: 49000000 INFO @ Mon, 10 Aug 2020 13:37:05: 48000000 INFO @ Mon, 10 Aug 2020 13:37:06: 50000000 INFO @ Mon, 10 Aug 2020 13:37:13: 49000000 INFO @ Mon, 10 Aug 2020 13:37:14: 51000000 INFO @ Mon, 10 Aug 2020 13:37:20: 50000000 INFO @ Mon, 10 Aug 2020 13:37:22: 52000000 INFO @ Mon, 10 Aug 2020 13:37:28: 51000000 INFO @ Mon, 10 Aug 2020 13:37:30: 53000000 INFO @ Mon, 10 Aug 2020 13:37:36: 52000000 INFO @ Mon, 10 Aug 2020 13:37:38: 54000000 INFO @ Mon, 10 Aug 2020 13:37:43: 53000000 INFO @ Mon, 10 Aug 2020 13:37:46: 55000000 INFO @ Mon, 10 Aug 2020 13:37:51: 54000000 INFO @ Mon, 10 Aug 2020 13:37:53: 56000000 INFO @ Mon, 10 Aug 2020 13:37:59: 55000000 INFO @ Mon, 10 Aug 2020 13:38:01: 57000000 INFO @ Mon, 10 Aug 2020 13:38:07: 56000000 INFO @ Mon, 10 Aug 2020 13:38:08: 58000000 INFO @ Mon, 10 Aug 2020 13:38:13: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:38:13: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:38:13: #1 total tags in treatment: 58601393 INFO @ Mon, 10 Aug 2020 13:38:13: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:38:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:38:14: #1 tags after filtering in treatment: 58601345 INFO @ Mon, 10 Aug 2020 13:38:14: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:38:14: #1 finished! INFO @ Mon, 10 Aug 2020 13:38:14: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:38:14: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:38:14: 57000000 INFO @ Mon, 10 Aug 2020 13:38:19: #2 number of paired peaks: 5217 INFO @ Mon, 10 Aug 2020 13:38:19: start model_add_line... INFO @ Mon, 10 Aug 2020 13:38:19: start X-correlation... INFO @ Mon, 10 Aug 2020 13:38:19: end of X-cor INFO @ Mon, 10 Aug 2020 13:38:19: #2 finished! INFO @ Mon, 10 Aug 2020 13:38:19: #2 predicted fragment length is 52 bps INFO @ Mon, 10 Aug 2020 13:38:19: #2 alternative fragment length(s) may be 52 bps INFO @ Mon, 10 Aug 2020 13:38:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.10_model.r WARNING @ Mon, 10 Aug 2020 13:38:19: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 13:38:19: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Mon, 10 Aug 2020 13:38:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 13:38:19: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:38:19: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 13:38:22: 58000000 INFO @ Mon, 10 Aug 2020 13:38:26: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:38:26: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:38:26: #1 total tags in treatment: 58601393 INFO @ Mon, 10 Aug 2020 13:38:26: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:38:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:38:27: #1 tags after filtering in treatment: 58601345 INFO @ Mon, 10 Aug 2020 13:38:27: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:38:27: #1 finished! INFO @ Mon, 10 Aug 2020 13:38:27: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:38:27: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:38:32: #2 number of paired peaks: 5217 INFO @ Mon, 10 Aug 2020 13:38:32: start model_add_line... INFO @ Mon, 10 Aug 2020 13:38:32: start X-correlation... INFO @ Mon, 10 Aug 2020 13:38:32: end of X-cor INFO @ Mon, 10 Aug 2020 13:38:32: #2 finished! INFO @ Mon, 10 Aug 2020 13:38:32: #2 predicted fragment length is 52 bps INFO @ Mon, 10 Aug 2020 13:38:32: #2 alternative fragment length(s) may be 52 bps INFO @ Mon, 10 Aug 2020 13:38:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.20_model.r WARNING @ Mon, 10 Aug 2020 13:38:32: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 13:38:32: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Mon, 10 Aug 2020 13:38:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 13:38:32: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:38:32: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Mon, 10 Aug 2020 13:38:46: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:39:54: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.05_peaks.xls INFO @ Mon, 10 Aug 2020 13:39:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.05_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:39:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.05_summits.bed INFO @ Mon, 10 Aug 2020 13:39:54: Done! pass1 - making usageList (61 chroms): 1 millis pass2 - checking and writing primary data (3644 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 13:40:24: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:40:38: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:41:30: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.10_peaks.xls INFO @ Mon, 10 Aug 2020 13:41:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.10_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:41:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.10_summits.bed INFO @ Mon, 10 Aug 2020 13:41:30: Done! pass1 - making usageList (52 chroms): 1 millis pass2 - checking and writing primary data (1745 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 13:41:44: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.20_peaks.xls INFO @ Mon, 10 Aug 2020 13:41:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.20_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:41:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047591/SRX8047591.20_summits.bed INFO @ Mon, 10 Aug 2020 13:41:44: Done! pass1 - making usageList (40 chroms): 1 millis pass2 - checking and writing primary data (763 records, 4 fields): 3 millis CompletedMACS2peakCalling