Job ID = 8184232 SRX = SRX8047575 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-08-10T02:58:15 prefetch.2.10.7: 1) Downloading 'SRR11471300'... 2020-08-10T02:58:15 prefetch.2.10.7: Downloading via HTTPS... 2020-08-10T03:01:47 prefetch.2.10.7: HTTPS download succeed 2020-08-10T03:01:47 prefetch.2.10.7: 1) 'SRR11471300' was downloaded successfully Read 61985491 spots for SRR11471300/SRR11471300.sra Written 61985491 spots for SRR11471300/SRR11471300.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:45:15 61985491 reads; of these: 61985491 (100.00%) were unpaired; of these: 2339432 (3.77%) aligned 0 times 45459663 (73.34%) aligned exactly 1 time 14186396 (22.89%) aligned >1 times 96.23% overall alignment rate Time searching: 00:45:18 Overall time: 00:45:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 7114918 / 59646059 = 0.1193 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:05:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:05:12: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:05:12: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:05:17: 1000000 INFO @ Mon, 10 Aug 2020 13:05:23: 2000000 INFO @ Mon, 10 Aug 2020 13:05:28: 3000000 INFO @ Mon, 10 Aug 2020 13:05:33: 4000000 INFO @ Mon, 10 Aug 2020 13:05:39: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:05:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:05:42: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:05:42: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:05:45: 6000000 INFO @ Mon, 10 Aug 2020 13:05:49: 1000000 INFO @ Mon, 10 Aug 2020 13:05:51: 7000000 INFO @ Mon, 10 Aug 2020 13:05:56: 2000000 INFO @ Mon, 10 Aug 2020 13:05:58: 8000000 INFO @ Mon, 10 Aug 2020 13:06:04: 3000000 INFO @ Mon, 10 Aug 2020 13:06:04: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:06:11: 10000000 INFO @ Mon, 10 Aug 2020 13:06:11: 4000000 INFO @ Mon, 10 Aug 2020 13:06:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:06:12: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:06:12: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:06:18: 11000000 INFO @ Mon, 10 Aug 2020 13:06:18: 1000000 INFO @ Mon, 10 Aug 2020 13:06:19: 5000000 INFO @ Mon, 10 Aug 2020 13:06:24: 12000000 INFO @ Mon, 10 Aug 2020 13:06:25: 2000000 INFO @ Mon, 10 Aug 2020 13:06:26: 6000000 INFO @ Mon, 10 Aug 2020 13:06:31: 13000000 INFO @ Mon, 10 Aug 2020 13:06:32: 3000000 INFO @ Mon, 10 Aug 2020 13:06:34: 7000000 INFO @ Mon, 10 Aug 2020 13:06:38: 14000000 INFO @ Mon, 10 Aug 2020 13:06:39: 4000000 INFO @ Mon, 10 Aug 2020 13:06:41: 8000000 INFO @ Mon, 10 Aug 2020 13:06:45: 15000000 INFO @ Mon, 10 Aug 2020 13:06:45: 5000000 INFO @ Mon, 10 Aug 2020 13:06:49: 9000000 INFO @ Mon, 10 Aug 2020 13:06:51: 16000000 INFO @ Mon, 10 Aug 2020 13:06:52: 6000000 INFO @ Mon, 10 Aug 2020 13:06:57: 10000000 INFO @ Mon, 10 Aug 2020 13:06:58: 17000000 INFO @ Mon, 10 Aug 2020 13:06:59: 7000000 INFO @ Mon, 10 Aug 2020 13:07:04: 11000000 INFO @ Mon, 10 Aug 2020 13:07:05: 18000000 INFO @ Mon, 10 Aug 2020 13:07:05: 8000000 INFO @ Mon, 10 Aug 2020 13:07:12: 19000000 INFO @ Mon, 10 Aug 2020 13:07:12: 12000000 INFO @ Mon, 10 Aug 2020 13:07:12: 9000000 INFO @ Mon, 10 Aug 2020 13:07:19: 10000000 INFO @ Mon, 10 Aug 2020 13:07:19: 20000000 INFO @ Mon, 10 Aug 2020 13:07:19: 13000000 INFO @ Mon, 10 Aug 2020 13:07:26: 11000000 INFO @ Mon, 10 Aug 2020 13:07:26: 21000000 INFO @ Mon, 10 Aug 2020 13:07:27: 14000000 INFO @ Mon, 10 Aug 2020 13:07:32: 12000000 INFO @ Mon, 10 Aug 2020 13:07:32: 22000000 INFO @ Mon, 10 Aug 2020 13:07:34: 15000000 INFO @ Mon, 10 Aug 2020 13:07:39: 13000000 INFO @ Mon, 10 Aug 2020 13:07:39: 23000000 INFO @ Mon, 10 Aug 2020 13:07:42: 16000000 INFO @ Mon, 10 Aug 2020 13:07:45: 14000000 INFO @ Mon, 10 Aug 2020 13:07:46: 24000000 INFO @ Mon, 10 Aug 2020 13:07:50: 17000000 INFO @ Mon, 10 Aug 2020 13:07:52: 15000000 INFO @ Mon, 10 Aug 2020 13:07:53: 25000000 INFO @ Mon, 10 Aug 2020 13:07:57: 18000000 INFO @ Mon, 10 Aug 2020 13:07:59: 16000000 INFO @ Mon, 10 Aug 2020 13:07:59: 26000000 INFO @ Mon, 10 Aug 2020 13:08:04: 19000000 INFO @ Mon, 10 Aug 2020 13:08:06: 17000000 INFO @ Mon, 10 Aug 2020 13:08:06: 27000000 INFO @ Mon, 10 Aug 2020 13:08:11: 20000000 INFO @ Mon, 10 Aug 2020 13:08:12: 18000000 INFO @ Mon, 10 Aug 2020 13:08:13: 28000000 INFO @ Mon, 10 Aug 2020 13:08:19: 21000000 INFO @ Mon, 10 Aug 2020 13:08:19: 19000000 INFO @ Mon, 10 Aug 2020 13:08:20: 29000000 INFO @ Mon, 10 Aug 2020 13:08:26: 30000000 INFO @ Mon, 10 Aug 2020 13:08:26: 22000000 INFO @ Mon, 10 Aug 2020 13:08:26: 20000000 INFO @ Mon, 10 Aug 2020 13:08:33: 31000000 INFO @ Mon, 10 Aug 2020 13:08:33: 21000000 INFO @ Mon, 10 Aug 2020 13:08:34: 23000000 INFO @ Mon, 10 Aug 2020 13:08:40: 32000000 INFO @ Mon, 10 Aug 2020 13:08:40: 22000000 INFO @ Mon, 10 Aug 2020 13:08:41: 24000000 INFO @ Mon, 10 Aug 2020 13:08:46: 33000000 INFO @ Mon, 10 Aug 2020 13:08:47: 23000000 INFO @ Mon, 10 Aug 2020 13:08:48: 25000000 INFO @ Mon, 10 Aug 2020 13:08:53: 34000000 INFO @ Mon, 10 Aug 2020 13:08:54: 24000000 INFO @ Mon, 10 Aug 2020 13:08:56: 26000000 INFO @ Mon, 10 Aug 2020 13:09:00: 35000000 INFO @ Mon, 10 Aug 2020 13:09:01: 25000000 INFO @ Mon, 10 Aug 2020 13:09:03: 27000000 INFO @ Mon, 10 Aug 2020 13:09:06: 36000000 INFO @ Mon, 10 Aug 2020 13:09:07: 26000000 INFO @ Mon, 10 Aug 2020 13:09:11: 28000000 INFO @ Mon, 10 Aug 2020 13:09:13: 37000000 INFO @ Mon, 10 Aug 2020 13:09:14: 27000000 INFO @ Mon, 10 Aug 2020 13:09:18: 29000000 INFO @ Mon, 10 Aug 2020 13:09:20: 38000000 INFO @ Mon, 10 Aug 2020 13:09:21: 28000000 INFO @ Mon, 10 Aug 2020 13:09:26: 30000000 INFO @ Mon, 10 Aug 2020 13:09:27: 39000000 INFO @ Mon, 10 Aug 2020 13:09:27: 29000000 INFO @ Mon, 10 Aug 2020 13:09:33: 40000000 INFO @ Mon, 10 Aug 2020 13:09:33: 31000000 INFO @ Mon, 10 Aug 2020 13:09:34: 30000000 INFO @ Mon, 10 Aug 2020 13:09:40: 41000000 INFO @ Mon, 10 Aug 2020 13:09:41: 31000000 INFO @ Mon, 10 Aug 2020 13:09:41: 32000000 INFO @ Mon, 10 Aug 2020 13:09:47: 42000000 INFO @ Mon, 10 Aug 2020 13:09:48: 32000000 INFO @ Mon, 10 Aug 2020 13:09:48: 33000000 INFO @ Mon, 10 Aug 2020 13:09:53: 43000000 INFO @ Mon, 10 Aug 2020 13:09:54: 33000000 INFO @ Mon, 10 Aug 2020 13:09:56: 34000000 INFO @ Mon, 10 Aug 2020 13:10:00: 44000000 INFO @ Mon, 10 Aug 2020 13:10:01: 34000000 INFO @ Mon, 10 Aug 2020 13:10:04: 35000000 INFO @ Mon, 10 Aug 2020 13:10:07: 45000000 INFO @ Mon, 10 Aug 2020 13:10:08: 35000000 INFO @ Mon, 10 Aug 2020 13:10:11: 36000000 INFO @ Mon, 10 Aug 2020 13:10:13: 46000000 INFO @ Mon, 10 Aug 2020 13:10:14: 36000000 INFO @ Mon, 10 Aug 2020 13:10:19: 37000000 INFO @ Mon, 10 Aug 2020 13:10:20: 47000000 INFO @ Mon, 10 Aug 2020 13:10:21: 37000000 INFO @ Mon, 10 Aug 2020 13:10:26: 38000000 INFO @ Mon, 10 Aug 2020 13:10:27: 48000000 INFO @ Mon, 10 Aug 2020 13:10:28: 38000000 INFO @ Mon, 10 Aug 2020 13:10:34: 49000000 INFO @ Mon, 10 Aug 2020 13:10:34: 39000000 INFO @ Mon, 10 Aug 2020 13:10:35: 39000000 INFO @ Mon, 10 Aug 2020 13:10:40: 50000000 INFO @ Mon, 10 Aug 2020 13:10:41: 40000000 INFO @ Mon, 10 Aug 2020 13:10:42: 40000000 INFO @ Mon, 10 Aug 2020 13:10:47: 51000000 INFO @ Mon, 10 Aug 2020 13:10:49: 41000000 INFO @ Mon, 10 Aug 2020 13:10:49: 41000000 INFO @ Mon, 10 Aug 2020 13:10:54: 52000000 INFO @ Mon, 10 Aug 2020 13:10:57: 42000000 INFO @ Mon, 10 Aug 2020 13:10:57: 42000000 INFO @ Mon, 10 Aug 2020 13:10:57: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:10:57: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:10:57: #1 total tags in treatment: 52531141 INFO @ Mon, 10 Aug 2020 13:10:57: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:10:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:10:58: #1 tags after filtering in treatment: 52531075 INFO @ Mon, 10 Aug 2020 13:10:58: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:10:58: #1 finished! INFO @ Mon, 10 Aug 2020 13:10:58: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:10:58: #2 looking for paired plus/minus strand peaks... BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 10 Aug 2020 13:11:03: #2 number of paired peaks: 28765 INFO @ Mon, 10 Aug 2020 13:11:03: start model_add_line... INFO @ Mon, 10 Aug 2020 13:11:04: start X-correlation... INFO @ Mon, 10 Aug 2020 13:11:04: end of X-cor INFO @ Mon, 10 Aug 2020 13:11:04: #2 finished! INFO @ Mon, 10 Aug 2020 13:11:04: #2 predicted fragment length is 116 bps INFO @ Mon, 10 Aug 2020 13:11:04: #2 alternative fragment length(s) may be 116 bps INFO @ Mon, 10 Aug 2020 13:11:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.05_model.r INFO @ Mon, 10 Aug 2020 13:11:04: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:11:04: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 13:11:04: 43000000 INFO @ Mon, 10 Aug 2020 13:11:05: 43000000 INFO @ Mon, 10 Aug 2020 13:11:12: 44000000 INFO @ Mon, 10 Aug 2020 13:11:12: 44000000 INFO @ Mon, 10 Aug 2020 13:11:19: 45000000 INFO @ Mon, 10 Aug 2020 13:11:20: 45000000 INFO @ Mon, 10 Aug 2020 13:11:27: 46000000 INFO @ Mon, 10 Aug 2020 13:11:27: 46000000 INFO @ Mon, 10 Aug 2020 13:11:34: 47000000 INFO @ Mon, 10 Aug 2020 13:11:35: 47000000 INFO @ Mon, 10 Aug 2020 13:11:42: 48000000 INFO @ Mon, 10 Aug 2020 13:11:43: 48000000 INFO @ Mon, 10 Aug 2020 13:11:50: 49000000 INFO @ Mon, 10 Aug 2020 13:11:50: 49000000 INFO @ Mon, 10 Aug 2020 13:11:57: 50000000 INFO @ Mon, 10 Aug 2020 13:11:58: 50000000 INFO @ Mon, 10 Aug 2020 13:12:05: 51000000 INFO @ Mon, 10 Aug 2020 13:12:06: 51000000 INFO @ Mon, 10 Aug 2020 13:12:13: 52000000 INFO @ Mon, 10 Aug 2020 13:12:13: 52000000 INFO @ Mon, 10 Aug 2020 13:12:17: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:12:17: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:12:17: #1 total tags in treatment: 52531141 INFO @ Mon, 10 Aug 2020 13:12:17: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:12:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:12:18: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:12:18: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:12:18: #1 total tags in treatment: 52531141 INFO @ Mon, 10 Aug 2020 13:12:18: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:12:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:12:18: #1 tags after filtering in treatment: 52531075 INFO @ Mon, 10 Aug 2020 13:12:18: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:12:18: #1 finished! INFO @ Mon, 10 Aug 2020 13:12:18: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:12:18: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:12:19: #1 tags after filtering in treatment: 52531075 INFO @ Mon, 10 Aug 2020 13:12:19: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:12:19: #1 finished! INFO @ Mon, 10 Aug 2020 13:12:19: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:12:19: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:12:23: #2 number of paired peaks: 28765 INFO @ Mon, 10 Aug 2020 13:12:23: start model_add_line... INFO @ Mon, 10 Aug 2020 13:12:24: start X-correlation... INFO @ Mon, 10 Aug 2020 13:12:24: end of X-cor INFO @ Mon, 10 Aug 2020 13:12:24: #2 finished! INFO @ Mon, 10 Aug 2020 13:12:24: #2 predicted fragment length is 116 bps INFO @ Mon, 10 Aug 2020 13:12:24: #2 alternative fragment length(s) may be 116 bps INFO @ Mon, 10 Aug 2020 13:12:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.10_model.r INFO @ Mon, 10 Aug 2020 13:12:24: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:12:24: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 13:12:24: #2 number of paired peaks: 28765 INFO @ Mon, 10 Aug 2020 13:12:24: start model_add_line... INFO @ Mon, 10 Aug 2020 13:12:24: start X-correlation... INFO @ Mon, 10 Aug 2020 13:12:24: end of X-cor INFO @ Mon, 10 Aug 2020 13:12:24: #2 finished! INFO @ Mon, 10 Aug 2020 13:12:24: #2 predicted fragment length is 116 bps INFO @ Mon, 10 Aug 2020 13:12:24: #2 alternative fragment length(s) may be 116 bps INFO @ Mon, 10 Aug 2020 13:12:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.20_model.r INFO @ Mon, 10 Aug 2020 13:12:24: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:12:24: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 13:13:02: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Mon, 10 Aug 2020 13:14:04: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.05_peaks.xls INFO @ Mon, 10 Aug 2020 13:14:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.05_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:14:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.05_summits.bed INFO @ Mon, 10 Aug 2020 13:14:04: Done! pass1 - making usageList (108 chroms): 4 millis pass2 - checking and writing primary data (24868 records, 4 fields): 26 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 13:14:22: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:14:22: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:15:23: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.20_peaks.xls INFO @ Mon, 10 Aug 2020 13:15:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.20_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:15:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.20_summits.bed INFO @ Mon, 10 Aug 2020 13:15:23: Done! INFO @ Mon, 10 Aug 2020 13:15:23: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.10_peaks.xls INFO @ Mon, 10 Aug 2020 13:15:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.10_peaks.narrowPeak pass1 - making usageList (60 chroms): 2 millis pass2 - checking and writing primary data (7458 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 13:15:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047575/SRX8047575.10_summits.bed INFO @ Mon, 10 Aug 2020 13:15:24: Done! pass1 - making usageList (85 chroms): 3 millis pass2 - checking and writing primary data (15018 records, 4 fields): 15 millis CompletedMACS2peakCalling