Job ID = 5790794 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-04-21T22:21:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:26:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:26:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:35:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:35:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:35:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:38:20 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:38:20 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:38:20 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:39:35 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:40:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:42:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:45:41 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:50:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T22:54:34 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T23:01:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T23:07:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T23:14:30 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T23:43:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T23:43:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-21T23:52:48 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 213,917,901 reads read : 427,835,802 reads written : 213,917,901 reads 0-length : 213,917,901 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:05 Time loading mirror index: 00:00:01 Multiseed full-index search: 03:21:41 213917901 reads; of these: 213917901 (100.00%) were unpaired; of these: 14473534 (6.77%) aligned 0 times 129583854 (60.58%) aligned exactly 1 time 69860513 (32.66%) aligned >1 times 93.23% overall alignment rate Time searching: 03:21:48 Overall time: 03:21:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 84 files... [bam_rmdupse_core] 66123726 / 199444367 = 0.3315 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 13:04:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 13:04:02: #1 read tag files... INFO @ Wed, 22 Apr 2020 13:04:02: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 13:04:09: 1000000 INFO @ Wed, 22 Apr 2020 13:04:15: 2000000 INFO @ Wed, 22 Apr 2020 13:04:22: 3000000 INFO @ Wed, 22 Apr 2020 13:04:29: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 13:04:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 13:04:31: #1 read tag files... INFO @ Wed, 22 Apr 2020 13:04:31: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 13:04:35: 5000000 INFO @ Wed, 22 Apr 2020 13:04:37: 1000000 INFO @ Wed, 22 Apr 2020 13:04:42: 6000000 INFO @ Wed, 22 Apr 2020 13:04:43: 2000000 INFO @ Wed, 22 Apr 2020 13:04:48: 7000000 INFO @ Wed, 22 Apr 2020 13:04:49: 3000000 INFO @ Wed, 22 Apr 2020 13:04:54: 4000000 INFO @ Wed, 22 Apr 2020 13:04:54: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 13:05:00: 5000000 INFO @ Wed, 22 Apr 2020 13:05:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 13:05:01: #1 read tag files... INFO @ Wed, 22 Apr 2020 13:05:01: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 13:05:01: 9000000 INFO @ Wed, 22 Apr 2020 13:05:06: 6000000 INFO @ Wed, 22 Apr 2020 13:05:07: 1000000 INFO @ Wed, 22 Apr 2020 13:05:08: 10000000 INFO @ Wed, 22 Apr 2020 13:05:12: 7000000 INFO @ Wed, 22 Apr 2020 13:05:12: 2000000 INFO @ Wed, 22 Apr 2020 13:05:15: 11000000 INFO @ Wed, 22 Apr 2020 13:05:17: 8000000 INFO @ Wed, 22 Apr 2020 13:05:18: 3000000 INFO @ Wed, 22 Apr 2020 13:05:22: 12000000 INFO @ Wed, 22 Apr 2020 13:05:24: 9000000 INFO @ Wed, 22 Apr 2020 13:05:24: 4000000 INFO @ Wed, 22 Apr 2020 13:05:28: 13000000 INFO @ Wed, 22 Apr 2020 13:05:30: 10000000 INFO @ Wed, 22 Apr 2020 13:05:31: 5000000 INFO @ Wed, 22 Apr 2020 13:05:35: 14000000 INFO @ Wed, 22 Apr 2020 13:05:37: 11000000 INFO @ Wed, 22 Apr 2020 13:05:37: 6000000 INFO @ Wed, 22 Apr 2020 13:05:42: 15000000 INFO @ Wed, 22 Apr 2020 13:05:44: 12000000 INFO @ Wed, 22 Apr 2020 13:05:44: 7000000 INFO @ Wed, 22 Apr 2020 13:05:49: 16000000 INFO @ Wed, 22 Apr 2020 13:05:51: 8000000 INFO @ Wed, 22 Apr 2020 13:05:51: 13000000 INFO @ Wed, 22 Apr 2020 13:05:55: 17000000 INFO @ Wed, 22 Apr 2020 13:05:57: 9000000 INFO @ Wed, 22 Apr 2020 13:05:58: 14000000 INFO @ Wed, 22 Apr 2020 13:06:02: 18000000 INFO @ Wed, 22 Apr 2020 13:06:04: 10000000 INFO @ Wed, 22 Apr 2020 13:06:04: 15000000 INFO @ Wed, 22 Apr 2020 13:06:09: 19000000 INFO @ Wed, 22 Apr 2020 13:06:11: 11000000 INFO @ Wed, 22 Apr 2020 13:06:11: 16000000 INFO @ Wed, 22 Apr 2020 13:06:16: 20000000 INFO @ Wed, 22 Apr 2020 13:06:17: 12000000 INFO @ Wed, 22 Apr 2020 13:06:18: 17000000 INFO @ Wed, 22 Apr 2020 13:06:22: 21000000 INFO @ Wed, 22 Apr 2020 13:06:23: 13000000 INFO @ Wed, 22 Apr 2020 13:06:24: 18000000 INFO @ Wed, 22 Apr 2020 13:06:29: 22000000 INFO @ Wed, 22 Apr 2020 13:06:29: 14000000 INFO @ Wed, 22 Apr 2020 13:06:30: 19000000 INFO @ Wed, 22 Apr 2020 13:06:35: 15000000 INFO @ Wed, 22 Apr 2020 13:06:35: 23000000 INFO @ Wed, 22 Apr 2020 13:06:36: 20000000 INFO @ Wed, 22 Apr 2020 13:06:41: 16000000 INFO @ Wed, 22 Apr 2020 13:06:41: 21000000 INFO @ Wed, 22 Apr 2020 13:06:42: 24000000 INFO @ Wed, 22 Apr 2020 13:06:46: 17000000 INFO @ Wed, 22 Apr 2020 13:06:47: 22000000 INFO @ Wed, 22 Apr 2020 13:06:49: 25000000 INFO @ Wed, 22 Apr 2020 13:06:52: 18000000 INFO @ Wed, 22 Apr 2020 13:06:54: 23000000 INFO @ Wed, 22 Apr 2020 13:06:56: 26000000 INFO @ Wed, 22 Apr 2020 13:06:59: 19000000 INFO @ Wed, 22 Apr 2020 13:07:01: 24000000 INFO @ Wed, 22 Apr 2020 13:07:02: 27000000 INFO @ Wed, 22 Apr 2020 13:07:06: 20000000 INFO @ Wed, 22 Apr 2020 13:07:08: 25000000 INFO @ Wed, 22 Apr 2020 13:07:09: 28000000 INFO @ Wed, 22 Apr 2020 13:07:13: 21000000 INFO @ Wed, 22 Apr 2020 13:07:15: 26000000 INFO @ Wed, 22 Apr 2020 13:07:16: 29000000 INFO @ Wed, 22 Apr 2020 13:07:19: 22000000 INFO @ Wed, 22 Apr 2020 13:07:22: 27000000 INFO @ Wed, 22 Apr 2020 13:07:23: 30000000 INFO @ Wed, 22 Apr 2020 13:07:26: 23000000 INFO @ Wed, 22 Apr 2020 13:07:29: 28000000 INFO @ Wed, 22 Apr 2020 13:07:30: 31000000 INFO @ Wed, 22 Apr 2020 13:07:34: 24000000 INFO @ Wed, 22 Apr 2020 13:07:35: 29000000 INFO @ Wed, 22 Apr 2020 13:07:37: 32000000 INFO @ Wed, 22 Apr 2020 13:07:41: 25000000 INFO @ Wed, 22 Apr 2020 13:07:42: 30000000 INFO @ Wed, 22 Apr 2020 13:07:44: 33000000 INFO @ Wed, 22 Apr 2020 13:07:47: 26000000 INFO @ Wed, 22 Apr 2020 13:07:49: 31000000 INFO @ Wed, 22 Apr 2020 13:07:51: 34000000 INFO @ Wed, 22 Apr 2020 13:07:54: 27000000 INFO @ Wed, 22 Apr 2020 13:07:56: 32000000 INFO @ Wed, 22 Apr 2020 13:07:58: 35000000 INFO @ Wed, 22 Apr 2020 13:08:01: 28000000 INFO @ Wed, 22 Apr 2020 13:08:03: 33000000 INFO @ Wed, 22 Apr 2020 13:08:05: 36000000 INFO @ Wed, 22 Apr 2020 13:08:08: 29000000 INFO @ Wed, 22 Apr 2020 13:08:09: 34000000 INFO @ Wed, 22 Apr 2020 13:08:12: 37000000 INFO @ Wed, 22 Apr 2020 13:08:15: 30000000 INFO @ Wed, 22 Apr 2020 13:08:16: 35000000 INFO @ Wed, 22 Apr 2020 13:08:19: 38000000 INFO @ Wed, 22 Apr 2020 13:08:23: 31000000 INFO @ Wed, 22 Apr 2020 13:08:24: 36000000 INFO @ Wed, 22 Apr 2020 13:08:26: 39000000 INFO @ Wed, 22 Apr 2020 13:08:30: 32000000 INFO @ Wed, 22 Apr 2020 13:08:31: 37000000 INFO @ Wed, 22 Apr 2020 13:08:33: 40000000 INFO @ Wed, 22 Apr 2020 13:08:37: 33000000 INFO @ Wed, 22 Apr 2020 13:08:38: 38000000 INFO @ Wed, 22 Apr 2020 13:08:40: 41000000 INFO @ Wed, 22 Apr 2020 13:08:44: 34000000 INFO @ Wed, 22 Apr 2020 13:08:45: 39000000 INFO @ Wed, 22 Apr 2020 13:08:47: 42000000 INFO @ Wed, 22 Apr 2020 13:08:51: 40000000 INFO @ Wed, 22 Apr 2020 13:08:51: 35000000 INFO @ Wed, 22 Apr 2020 13:08:53: 43000000 INFO @ Wed, 22 Apr 2020 13:08:58: 41000000 INFO @ Wed, 22 Apr 2020 13:08:58: 36000000 INFO @ Wed, 22 Apr 2020 13:09:00: 44000000 INFO @ Wed, 22 Apr 2020 13:09:05: 42000000 INFO @ Wed, 22 Apr 2020 13:09:05: 37000000 INFO @ Wed, 22 Apr 2020 13:09:07: 45000000 INFO @ Wed, 22 Apr 2020 13:09:11: 43000000 INFO @ Wed, 22 Apr 2020 13:09:13: 38000000 INFO @ Wed, 22 Apr 2020 13:09:14: 46000000 INFO @ Wed, 22 Apr 2020 13:09:18: 44000000 INFO @ Wed, 22 Apr 2020 13:09:20: 39000000 INFO @ Wed, 22 Apr 2020 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55000000 INFO @ Wed, 22 Apr 2020 13:10:16: 47000000 INFO @ Wed, 22 Apr 2020 13:10:20: 53000000 INFO @ Wed, 22 Apr 2020 13:10:22: 48000000 INFO @ Wed, 22 Apr 2020 13:10:22: 56000000 INFO @ Wed, 22 Apr 2020 13:10:27: 54000000 INFO @ Wed, 22 Apr 2020 13:10:29: 57000000 INFO @ Wed, 22 Apr 2020 13:10:29: 49000000 INFO @ Wed, 22 Apr 2020 13:10:33: 55000000 INFO @ Wed, 22 Apr 2020 13:10:36: 58000000 INFO @ Wed, 22 Apr 2020 13:10:36: 50000000 INFO @ Wed, 22 Apr 2020 13:10:40: 56000000 INFO @ Wed, 22 Apr 2020 13:10:43: 59000000 INFO @ Wed, 22 Apr 2020 13:10:43: 51000000 INFO @ Wed, 22 Apr 2020 13:10:47: 57000000 INFO @ Wed, 22 Apr 2020 13:10:49: 60000000 INFO @ Wed, 22 Apr 2020 13:10:50: 52000000 INFO @ Wed, 22 Apr 2020 13:10:54: 58000000 INFO @ Wed, 22 Apr 2020 13:10:56: 61000000 INFO @ Wed, 22 Apr 2020 13:10:57: 53000000 INFO @ Wed, 22 Apr 2020 13:11:01: 59000000 INFO @ Wed, 22 Apr 2020 13:11:03: 62000000 INFO @ Wed, 22 Apr 2020 13:11:05: 54000000 INFO @ Wed, 22 Apr 2020 13:11:08: 60000000 INFO @ Wed, 22 Apr 2020 13:11:10: 63000000 INFO @ Wed, 22 Apr 2020 13:11:12: 55000000 INFO @ Wed, 22 Apr 2020 13:11:14: 61000000 INFO @ Wed, 22 Apr 2020 13:11:16: 64000000 INFO @ Wed, 22 Apr 2020 13:11:19: 56000000 INFO @ Wed, 22 Apr 2020 13:11:21: 62000000 INFO @ Wed, 22 Apr 2020 13:11:23: 65000000 INFO @ Wed, 22 Apr 2020 13:11:26: 57000000 INFO @ Wed, 22 Apr 2020 13:11:28: 63000000 INFO @ Wed, 22 Apr 2020 13:11:30: 66000000 INFO @ Wed, 22 Apr 2020 13:11:34: 58000000 INFO @ Wed, 22 Apr 2020 13:11:35: 64000000 INFO @ Wed, 22 Apr 2020 13:11:36: 67000000 INFO @ Wed, 22 Apr 2020 13:11:41: 59000000 INFO @ Wed, 22 Apr 2020 13:11:42: 65000000 INFO @ Wed, 22 Apr 2020 13:11:43: 68000000 INFO @ Wed, 22 Apr 2020 13:11:49: 66000000 INFO @ Wed, 22 Apr 2020 13:11:49: 60000000 INFO @ Wed, 22 Apr 2020 13:11:50: 69000000 INFO @ Wed, 22 Apr 2020 13:11:55: 67000000 INFO @ Wed, 22 Apr 2020 13:11:56: 70000000 INFO @ Wed, 22 Apr 2020 13:11:57: 61000000 INFO @ Wed, 22 Apr 2020 13:12:03: 68000000 INFO @ Wed, 22 Apr 2020 13:12:03: 71000000 INFO @ Wed, 22 Apr 2020 13:12:05: 62000000 INFO @ Wed, 22 Apr 2020 13:12:09: 69000000 INFO @ Wed, 22 Apr 2020 13:12:10: 72000000 INFO @ Wed, 22 Apr 2020 13:12:13: 63000000 INFO @ Wed, 22 Apr 2020 13:12:16: 70000000 INFO @ Wed, 22 Apr 2020 13:12:17: 73000000 INFO @ Wed, 22 Apr 2020 13:12:21: 64000000 INFO @ Wed, 22 Apr 2020 13:12:23: 71000000 INFO @ Wed, 22 Apr 2020 13:12:24: 74000000 INFO @ Wed, 22 Apr 2020 13:12:29: 65000000 INFO @ Wed, 22 Apr 2020 13:12:30: 72000000 INFO @ Wed, 22 Apr 2020 13:12:31: 75000000 INFO @ Wed, 22 Apr 2020 13:12:36: 66000000 INFO @ Wed, 22 Apr 2020 13:12:37: 73000000 INFO @ Wed, 22 Apr 2020 13:12:38: 76000000 INFO @ Wed, 22 Apr 2020 13:12:43: 67000000 INFO @ Wed, 22 Apr 2020 13:12:44: 77000000 INFO @ Wed, 22 Apr 2020 13:12:44: 74000000 INFO @ Wed, 22 Apr 2020 13:12:50: 68000000 INFO @ Wed, 22 Apr 2020 13:12:51: 78000000 INFO @ Wed, 22 Apr 2020 13:12:51: 75000000 INFO @ Wed, 22 Apr 2020 13:12:57: 69000000 INFO @ Wed, 22 Apr 2020 13:12:58: 79000000 INFO @ Wed, 22 Apr 2020 13:12:58: 76000000 INFO @ Wed, 22 Apr 2020 13:13:04: 80000000 INFO @ Wed, 22 Apr 2020 13:13:05: 70000000 INFO @ Wed, 22 Apr 2020 13:13:05: 77000000 INFO @ Wed, 22 Apr 2020 13:13:11: 81000000 INFO @ Wed, 22 Apr 2020 13:13:12: 71000000 INFO @ Wed, 22 Apr 2020 13:13:12: 78000000 INFO @ Wed, 22 Apr 2020 13:13:18: 82000000 INFO @ Wed, 22 Apr 2020 13:13:19: 79000000 INFO @ Wed, 22 Apr 2020 13:13:19: 72000000 INFO @ Wed, 22 Apr 2020 13:13:25: 83000000 INFO @ Wed, 22 Apr 2020 13:13:25: 80000000 INFO @ Wed, 22 Apr 2020 13:13:26: 73000000 INFO @ Wed, 22 Apr 2020 13:13:31: 84000000 INFO @ Wed, 22 Apr 2020 13:13:32: 81000000 INFO @ Wed, 22 Apr 2020 13:13:33: 74000000 INFO @ Wed, 22 Apr 2020 13:13:38: 85000000 INFO @ Wed, 22 Apr 2020 13:13:39: 82000000 INFO @ Wed, 22 Apr 2020 13:13:40: 75000000 INFO @ Wed, 22 Apr 2020 13:13:45: 86000000 INFO @ Wed, 22 Apr 2020 13:13:45: 83000000 INFO @ Wed, 22 Apr 2020 13:13:47: 76000000 INFO @ Wed, 22 Apr 2020 13:13:52: 87000000 INFO @ Wed, 22 Apr 2020 13:13:52: 84000000 INFO @ Wed, 22 Apr 2020 13:13:54: 77000000 INFO @ Wed, 22 Apr 2020 13:13:58: 88000000 INFO @ Wed, 22 Apr 2020 13:13:59: 85000000 INFO @ Wed, 22 Apr 2020 13:14:01: 78000000 INFO @ Wed, 22 Apr 2020 13:14:05: 89000000 INFO @ Wed, 22 Apr 2020 13:14:05: 86000000 INFO @ Wed, 22 Apr 2020 13:14:08: 79000000 INFO @ Wed, 22 Apr 2020 13:14:12: 90000000 INFO @ Wed, 22 Apr 2020 13:14:12: 87000000 INFO @ Wed, 22 Apr 2020 13:14:15: 80000000 INFO @ Wed, 22 Apr 2020 13:14:18: 91000000 INFO @ Wed, 22 Apr 2020 13:14:19: 88000000 INFO @ Wed, 22 Apr 2020 13:14:21: 81000000 INFO @ Wed, 22 Apr 2020 13:14:25: 89000000 INFO @ Wed, 22 Apr 2020 13:14:25: 92000000 INFO @ Wed, 22 Apr 2020 13:14:28: 82000000 INFO @ Wed, 22 Apr 2020 13:14:32: 90000000 INFO @ Wed, 22 Apr 2020 13:14:32: 93000000 INFO @ Wed, 22 Apr 2020 13:14:35: 83000000 INFO @ Wed, 22 Apr 2020 13:14:38: 91000000 INFO @ Wed, 22 Apr 2020 13:14:39: 94000000 INFO @ Wed, 22 Apr 2020 13:14:41: 84000000 INFO @ Wed, 22 Apr 2020 13:14:45: 92000000 INFO @ Wed, 22 Apr 2020 13:14:46: 95000000 INFO @ Wed, 22 Apr 2020 13:14:48: 85000000 INFO @ Wed, 22 Apr 2020 13:14:52: 93000000 INFO @ Wed, 22 Apr 2020 13:14:53: 96000000 INFO @ Wed, 22 Apr 2020 13:14:55: 86000000 INFO @ Wed, 22 Apr 2020 13:14:59: 94000000 INFO @ Wed, 22 Apr 2020 13:15:00: 97000000 INFO @ Wed, 22 Apr 2020 13:15:02: 87000000 INFO @ Wed, 22 Apr 2020 13:15:06: 95000000 INFO @ Wed, 22 Apr 2020 13:15:07: 98000000 INFO @ Wed, 22 Apr 2020 13:15:08: 88000000 INFO @ Wed, 22 Apr 2020 13:15:13: 96000000 INFO @ Wed, 22 Apr 2020 13:15:14: 99000000 INFO @ Wed, 22 Apr 2020 13:15:15: 89000000 INFO @ Wed, 22 Apr 2020 13:15:19: 97000000 INFO @ Wed, 22 Apr 2020 13:15:21: 100000000 INFO @ Wed, 22 Apr 2020 13:15:22: 90000000 INFO @ Wed, 22 Apr 2020 13:15:26: 98000000 INFO @ Wed, 22 Apr 2020 13:15:28: 101000000 INFO @ Wed, 22 Apr 2020 13:15:29: 91000000 INFO @ Wed, 22 Apr 2020 13:15:33: 99000000 INFO @ Wed, 22 Apr 2020 13:15:35: 102000000 INFO @ Wed, 22 Apr 2020 13:15:35: 92000000 INFO @ Wed, 22 Apr 2020 13:15:40: 100000000 INFO @ Wed, 22 Apr 2020 13:15:42: 103000000 INFO @ Wed, 22 Apr 2020 13:15:43: 93000000 INFO @ Wed, 22 Apr 2020 13:15:47: 101000000 INFO @ Wed, 22 Apr 2020 13:15:49: 104000000 INFO @ Wed, 22 Apr 2020 13:15:50: 94000000 INFO @ Wed, 22 Apr 2020 13:15:54: 102000000 INFO @ Wed, 22 Apr 2020 13:15:56: 105000000 INFO @ Wed, 22 Apr 2020 13:15:57: 95000000 INFO @ Wed, 22 Apr 2020 13:16:00: 103000000 INFO @ Wed, 22 Apr 2020 13:16:03: 106000000 INFO @ Wed, 22 Apr 2020 13:16:04: 96000000 INFO @ Wed, 22 Apr 2020 13:16:07: 104000000 INFO @ Wed, 22 Apr 2020 13:16:10: 107000000 INFO @ Wed, 22 Apr 2020 13:16:11: 97000000 INFO @ Wed, 22 Apr 2020 13:16:14: 105000000 INFO @ Wed, 22 Apr 2020 13:16:16: 108000000 INFO @ Wed, 22 Apr 2020 13:16:18: 98000000 INFO @ Wed, 22 Apr 2020 13:16:21: 106000000 INFO @ Wed, 22 Apr 2020 13:16:23: 109000000 INFO @ Wed, 22 Apr 2020 13:16:25: 99000000 INFO @ Wed, 22 Apr 2020 13:16:28: 107000000 INFO @ Wed, 22 Apr 2020 13:16:30: 110000000 INFO @ Wed, 22 Apr 2020 13:16:32: 100000000 INFO @ Wed, 22 Apr 2020 13:16:35: 108000000 INFO @ Wed, 22 Apr 2020 13:16:37: 111000000 INFO @ Wed, 22 Apr 2020 13:16:39: 101000000 INFO @ Wed, 22 Apr 2020 13:16:41: 109000000 INFO @ Wed, 22 Apr 2020 13:16:44: 112000000 INFO @ Wed, 22 Apr 2020 13:16:46: 102000000 INFO @ Wed, 22 Apr 2020 13:16:48: 110000000 INFO @ Wed, 22 Apr 2020 13:16:51: 113000000 INFO @ Wed, 22 Apr 2020 13:16:52: 103000000 INFO @ Wed, 22 Apr 2020 13:16:55: 111000000 INFO @ Wed, 22 Apr 2020 13:16:58: 114000000 INFO @ Wed, 22 Apr 2020 13:16:59: 104000000 INFO @ Wed, 22 Apr 2020 13:17:02: 112000000 INFO @ Wed, 22 Apr 2020 13:17:05: 115000000 INFO @ Wed, 22 Apr 2020 13:17:06: 105000000 INFO @ Wed, 22 Apr 2020 13:17:08: 113000000 INFO @ Wed, 22 Apr 2020 13:17:12: 116000000 INFO @ Wed, 22 Apr 2020 13:17:13: 106000000 INFO @ Wed, 22 Apr 2020 13:17:15: 114000000 INFO @ Wed, 22 Apr 2020 13:17:18: 117000000 INFO @ Wed, 22 Apr 2020 13:17:20: 107000000 INFO @ Wed, 22 Apr 2020 13:17:22: 115000000 INFO @ Wed, 22 Apr 2020 13:17:25: 118000000 INFO @ Wed, 22 Apr 2020 13:17:27: 108000000 INFO @ Wed, 22 Apr 2020 13:17:29: 116000000 INFO @ Wed, 22 Apr 2020 13:17:32: 119000000 INFO @ Wed, 22 Apr 2020 13:17:34: 109000000 INFO @ Wed, 22 Apr 2020 13:17:35: 117000000 INFO @ Wed, 22 Apr 2020 13:17:38: 120000000 INFO @ Wed, 22 Apr 2020 13:17:41: 110000000 INFO @ Wed, 22 Apr 2020 13:17:42: 118000000 INFO @ Wed, 22 Apr 2020 13:17:45: 121000000 INFO @ Wed, 22 Apr 2020 13:17:48: 111000000 INFO @ Wed, 22 Apr 2020 13:17:49: 119000000 INFO @ Wed, 22 Apr 2020 13:17:52: 122000000 INFO @ Wed, 22 Apr 2020 13:17:55: 112000000 INFO @ Wed, 22 Apr 2020 13:17:55: 120000000 INFO @ Wed, 22 Apr 2020 13:17:59: 123000000 INFO @ Wed, 22 Apr 2020 13:18:02: 121000000 INFO @ Wed, 22 Apr 2020 13:18:02: 113000000 INFO @ Wed, 22 Apr 2020 13:18:05: 124000000 INFO @ Wed, 22 Apr 2020 13:18:09: 122000000 INFO @ Wed, 22 Apr 2020 13:18:09: 114000000 INFO @ Wed, 22 Apr 2020 13:18:12: 125000000 INFO @ Wed, 22 Apr 2020 13:18:15: 123000000 INFO @ Wed, 22 Apr 2020 13:18:16: 115000000 INFO @ Wed, 22 Apr 2020 13:18:19: 126000000 INFO @ Wed, 22 Apr 2020 13:18:22: 124000000 INFO @ Wed, 22 Apr 2020 13:18:22: 116000000 INFO @ Wed, 22 Apr 2020 13:18:26: 127000000 INFO @ Wed, 22 Apr 2020 13:18:29: 125000000 INFO @ Wed, 22 Apr 2020 13:18:29: 117000000 INFO @ Wed, 22 Apr 2020 13:18:33: 128000000 INFO @ Wed, 22 Apr 2020 13:18:35: 126000000 INFO @ Wed, 22 Apr 2020 13:18:36: 118000000 INFO @ Wed, 22 Apr 2020 13:18:40: 129000000 INFO @ Wed, 22 Apr 2020 13:18:42: 127000000 INFO @ Wed, 22 Apr 2020 13:18:43: 119000000 INFO @ Wed, 22 Apr 2020 13:18:47: 130000000 INFO @ Wed, 22 Apr 2020 13:18:49: 120000000 INFO @ Wed, 22 Apr 2020 13:18:49: 128000000 INFO @ Wed, 22 Apr 2020 13:18:54: 131000000 INFO @ Wed, 22 Apr 2020 13:18:56: 129000000 INFO @ Wed, 22 Apr 2020 13:18:56: 121000000 INFO @ Wed, 22 Apr 2020 13:19:01: 132000000 INFO @ Wed, 22 Apr 2020 13:19:03: 130000000 INFO @ Wed, 22 Apr 2020 13:19:03: 122000000 INFO @ Wed, 22 Apr 2020 13:19:08: 133000000 INFO @ Wed, 22 Apr 2020 13:19:09: 131000000 INFO @ Wed, 22 Apr 2020 13:19:09: 123000000 INFO @ Wed, 22 Apr 2020 13:19:11: #1 tag size is determined as 74 bps INFO @ Wed, 22 Apr 2020 13:19:11: #1 tag size = 74 INFO @ Wed, 22 Apr 2020 13:19:11: #1 total tags in treatment: 133320641 INFO @ Wed, 22 Apr 2020 13:19:11: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 13:19:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 13:19:13: #1 tags after filtering in treatment: 133320627 INFO @ Wed, 22 Apr 2020 13:19:13: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 13:19:13: #1 finished! INFO @ Wed, 22 Apr 2020 13:19:13: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 13:19:13: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 13:19:15: 124000000 INFO @ Wed, 22 Apr 2020 13:19:16: 132000000 INFO @ Wed, 22 Apr 2020 13:19:21: 125000000 INFO @ Wed, 22 Apr 2020 13:19:23: 133000000 INFO @ Wed, 22 Apr 2020 13:19:23: #2 number of paired peaks: 12969 INFO @ Wed, 22 Apr 2020 13:19:23: start model_add_line... INFO @ Wed, 22 Apr 2020 13:19:24: start X-correlation... INFO @ Wed, 22 Apr 2020 13:19:24: end of X-cor INFO @ Wed, 22 Apr 2020 13:19:24: #2 finished! INFO @ Wed, 22 Apr 2020 13:19:24: #2 predicted fragment length is 89 bps INFO @ Wed, 22 Apr 2020 13:19:24: #2 alternative fragment length(s) may be 89 bps INFO @ Wed, 22 Apr 2020 13:19:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.05_model.r WARNING @ Wed, 22 Apr 2020 13:19:24: #2 Since the d (89) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 22 Apr 2020 13:19:24: #2 You may need to consider one of the other alternative d(s): 89 WARNING @ Wed, 22 Apr 2020 13:19:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 22 Apr 2020 13:19:24: #3 Call peaks... INFO @ Wed, 22 Apr 2020 13:19:24: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 22 Apr 2020 13:19:26: #1 tag size is determined as 74 bps INFO @ Wed, 22 Apr 2020 13:19:26: #1 tag size = 74 INFO @ Wed, 22 Apr 2020 13:19:26: #1 total tags in treatment: 133320641 INFO @ Wed, 22 Apr 2020 13:19:26: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 13:19:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 13:19:27: 126000000 INFO @ Wed, 22 Apr 2020 13:19:28: #1 tags after filtering in treatment: 133320627 INFO @ Wed, 22 Apr 2020 13:19:28: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 13:19:28: #1 finished! INFO @ Wed, 22 Apr 2020 13:19:28: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 13:19:28: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 13:19:33: 127000000 INFO @ Wed, 22 Apr 2020 13:19:38: 128000000 INFO @ Wed, 22 Apr 2020 13:19:38: #2 number of paired peaks: 12969 INFO @ Wed, 22 Apr 2020 13:19:38: start model_add_line... INFO @ Wed, 22 Apr 2020 13:19:39: start X-correlation... INFO @ Wed, 22 Apr 2020 13:19:39: end of X-cor INFO @ Wed, 22 Apr 2020 13:19:39: #2 finished! INFO @ Wed, 22 Apr 2020 13:19:39: #2 predicted fragment length is 89 bps INFO @ Wed, 22 Apr 2020 13:19:39: #2 alternative fragment length(s) may be 89 bps INFO @ Wed, 22 Apr 2020 13:19:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.10_model.r WARNING @ Wed, 22 Apr 2020 13:19:39: #2 Since the d (89) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 22 Apr 2020 13:19:39: #2 You may need to consider one of the other alternative d(s): 89 WARNING @ Wed, 22 Apr 2020 13:19:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 22 Apr 2020 13:19:39: #3 Call peaks... INFO @ Wed, 22 Apr 2020 13:19:39: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 22 Apr 2020 13:19:44: 129000000 INFO @ Wed, 22 Apr 2020 13:19:50: 130000000 INFO @ Wed, 22 Apr 2020 13:19:56: 131000000 INFO @ Wed, 22 Apr 2020 13:20:01: 132000000 INFO @ Wed, 22 Apr 2020 13:20:07: 133000000 INFO @ Wed, 22 Apr 2020 13:20:10: #1 tag size is determined as 74 bps INFO @ Wed, 22 Apr 2020 13:20:10: #1 tag size = 74 INFO @ Wed, 22 Apr 2020 13:20:10: #1 total tags in treatment: 133320641 INFO @ Wed, 22 Apr 2020 13:20:10: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 13:20:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 13:20:12: #1 tags after filtering in treatment: 133320627 INFO @ Wed, 22 Apr 2020 13:20:12: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 13:20:12: #1 finished! INFO @ Wed, 22 Apr 2020 13:20:12: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 13:20:12: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 13:20:22: #2 number of paired peaks: 12969 INFO @ Wed, 22 Apr 2020 13:20:22: start model_add_line... INFO @ Wed, 22 Apr 2020 13:20:23: start X-correlation... INFO @ Wed, 22 Apr 2020 13:20:23: end of X-cor INFO @ Wed, 22 Apr 2020 13:20:23: #2 finished! INFO @ Wed, 22 Apr 2020 13:20:23: #2 predicted fragment length is 89 bps INFO @ Wed, 22 Apr 2020 13:20:23: #2 alternative fragment length(s) may be 89 bps INFO @ Wed, 22 Apr 2020 13:20:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.20_model.r WARNING @ Wed, 22 Apr 2020 13:20:23: #2 Since the d (89) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 22 Apr 2020 13:20:23: #2 You may need to consider one of the other alternative d(s): 89 WARNING @ Wed, 22 Apr 2020 13:20:23: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 22 Apr 2020 13:20:23: #3 Call peaks... INFO @ Wed, 22 Apr 2020 13:20:23: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 22 Apr 2020 13:24:20: #3 Call peaks for each chromosome... INFO @ Wed, 22 Apr 2020 13:24:30: #3 Call peaks for each chromosome... INFO @ Wed, 22 Apr 2020 13:25:01: #3 Call peaks for each chromosome... INFO @ Wed, 22 Apr 2020 13:26:51: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.05_peaks.xls INFO @ Wed, 22 Apr 2020 13:26:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.05_peaks.narrowPeak INFO @ Wed, 22 Apr 2020 13:26:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.05_summits.bed INFO @ Wed, 22 Apr 2020 13:26:52: Done! pass1 - making usageList (213 chroms): 8 millis pass2 - checking and writing primary data (54182 records, 4 fields): 51 millis CompletedMACS2peakCalling INFO @ Wed, 22 Apr 2020 13:27:13: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.10_peaks.xls INFO @ Wed, 22 Apr 2020 13:27:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.10_peaks.narrowPeak INFO @ Wed, 22 Apr 2020 13:27:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.10_summits.bed INFO @ Wed, 22 Apr 2020 13:27:14: Done! pass1 - making usageList (134 chroms): 4 millis pass2 - checking and writing primary data (22106 records, 4 fields): 36 millis CompletedMACS2peakCalling INFO @ Wed, 22 Apr 2020 13:27:33: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.20_peaks.xls INFO @ Wed, 22 Apr 2020 13:27:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.20_peaks.narrowPeak INFO @ Wed, 22 Apr 2020 13:27:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX7625161/SRX7625161.20_summits.bed INFO @ Wed, 22 Apr 2020 13:27:33: Done! pass1 - making usageList (84 chroms): 1 millis pass2 - checking and writing primary data (4541 records, 4 fields): 8 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。