Job ID = 11632715 sra ファイルのダウンロード中... Completed: 1753307K bytes transferred in 19 seconds (737240K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 68030042 spots for /home/okishinya/chipatlas/results/rn6/SRX3782474/SRR6826292.sra Written 68030042 spots for /home/okishinya/chipatlas/results/rn6/SRX3782474/SRR6826292.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:28:48 68030042 reads; of these: 68030042 (100.00%) were unpaired; of these: 2605116 (3.83%) aligned 0 times 49775021 (73.17%) aligned exactly 1 time 15649905 (23.00%) aligned >1 times 96.17% overall alignment rate Time searching: 00:28:49 Overall time: 00:28:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 20 files... [bam_rmdupse_core] 5309401 / 65424926 = 0.0812 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 15 Feb 2019 07:24:11: # Command line: callpeak -t SRX3782474.bam -f BAM -g 2.15e9 -n SRX3782474.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3782474.20 # format = BAM # ChIP-seq file = ['SRX3782474.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:24:11: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:24:11: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:24:11: # Command line: callpeak -t SRX3782474.bam -f BAM -g 2.15e9 -n SRX3782474.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3782474.05 # format = BAM # ChIP-seq file = ['SRX3782474.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:24:11: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:24:11: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:24:11: # Command line: callpeak -t SRX3782474.bam -f BAM -g 2.15e9 -n SRX3782474.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3782474.10 # format = BAM # ChIP-seq file = ['SRX3782474.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:24:11: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:24:11: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:24:17: 1000000 INFO @ Fri, 15 Feb 2019 07:24:18: 1000000 INFO @ Fri, 15 Feb 2019 07:24:18: 1000000 INFO @ Fri, 15 Feb 2019 07:24:24: 2000000 INFO @ Fri, 15 Feb 2019 07:24:24: 2000000 INFO @ Fri, 15 Feb 2019 07:24:24: 2000000 INFO @ Fri, 15 Feb 2019 07:24:30: 3000000 INFO @ Fri, 15 Feb 2019 07:24:31: 3000000 INFO @ Fri, 15 Feb 2019 07:24:31: 3000000 INFO @ Fri, 15 Feb 2019 07:24:37: 4000000 INFO @ Fri, 15 Feb 2019 07:24:37: 4000000 INFO @ Fri, 15 Feb 2019 07:24:37: 4000000 INFO @ Fri, 15 Feb 2019 07:24:43: 5000000 INFO @ Fri, 15 Feb 2019 07:24:44: 5000000 INFO @ Fri, 15 Feb 2019 07:24:44: 5000000 INFO @ Fri, 15 Feb 2019 07:24:49: 6000000 INFO @ Fri, 15 Feb 2019 07:24:50: 6000000 INFO @ Fri, 15 Feb 2019 07:24:50: 6000000 INFO @ Fri, 15 Feb 2019 07:24:56: 7000000 INFO @ Fri, 15 Feb 2019 07:24:57: 7000000 INFO @ Fri, 15 Feb 2019 07:24:57: 7000000 INFO @ Fri, 15 Feb 2019 07:25:02: 8000000 INFO @ Fri, 15 Feb 2019 07:25:03: 8000000 INFO @ Fri, 15 Feb 2019 07:25:04: 8000000 INFO @ Fri, 15 Feb 2019 07:25:09: 9000000 INFO @ Fri, 15 Feb 2019 07:25:10: 9000000 INFO @ Fri, 15 Feb 2019 07:25:11: 9000000 INFO @ Fri, 15 Feb 2019 07:25:16: 10000000 INFO @ Fri, 15 Feb 2019 07:25:17: 10000000 INFO @ Fri, 15 Feb 2019 07:25:17: 10000000 INFO @ Fri, 15 Feb 2019 07:25:23: 11000000 INFO @ Fri, 15 Feb 2019 07:25:23: 11000000 INFO @ Fri, 15 Feb 2019 07:25:24: 11000000 INFO @ Fri, 15 Feb 2019 07:25:29: 12000000 INFO @ Fri, 15 Feb 2019 07:25:30: 12000000 INFO @ Fri, 15 Feb 2019 07:25:31: 12000000 INFO @ Fri, 15 Feb 2019 07:25:36: 13000000 INFO @ Fri, 15 Feb 2019 07:25:37: 13000000 INFO @ Fri, 15 Feb 2019 07:25:38: 13000000 INFO @ Fri, 15 Feb 2019 07:25:42: 14000000 INFO @ Fri, 15 Feb 2019 07:25:43: 14000000 INFO @ Fri, 15 Feb 2019 07:25:45: 14000000 INFO @ Fri, 15 Feb 2019 07:25:48: 15000000 INFO @ Fri, 15 Feb 2019 07:25:50: 15000000 INFO @ Fri, 15 Feb 2019 07:25:51: 15000000 INFO @ Fri, 15 Feb 2019 07:25:54: 16000000 INFO @ Fri, 15 Feb 2019 07:25:57: 16000000 INFO @ Fri, 15 Feb 2019 07:25:58: 16000000 INFO @ Fri, 15 Feb 2019 07:26:01: 17000000 INFO @ Fri, 15 Feb 2019 07:26:04: 17000000 INFO @ Fri, 15 Feb 2019 07:26:04: 17000000 INFO @ Fri, 15 Feb 2019 07:26:08: 18000000 INFO @ Fri, 15 Feb 2019 07:26:10: 18000000 INFO @ Fri, 15 Feb 2019 07:26:11: 18000000 INFO @ Fri, 15 Feb 2019 07:26:14: 19000000 INFO @ Fri, 15 Feb 2019 07:26:17: 19000000 INFO @ Fri, 15 Feb 2019 07:26:17: 19000000 INFO @ Fri, 15 Feb 2019 07:26:21: 20000000 INFO @ Fri, 15 Feb 2019 07:26:23: 20000000 INFO @ Fri, 15 Feb 2019 07:26:25: 20000000 INFO @ Fri, 15 Feb 2019 07:26:28: 21000000 INFO @ Fri, 15 Feb 2019 07:26:30: 21000000 INFO @ Fri, 15 Feb 2019 07:26:31: 21000000 INFO @ Fri, 15 Feb 2019 07:26:34: 22000000 INFO @ Fri, 15 Feb 2019 07:26:36: 22000000 INFO @ Fri, 15 Feb 2019 07:26:38: 22000000 INFO @ Fri, 15 Feb 2019 07:26:40: 23000000 INFO @ Fri, 15 Feb 2019 07:26:43: 23000000 INFO @ Fri, 15 Feb 2019 07:26:45: 23000000 INFO @ Fri, 15 Feb 2019 07:26:47: 24000000 INFO @ Fri, 15 Feb 2019 07:26:49: 24000000 INFO @ Fri, 15 Feb 2019 07:26:52: 24000000 INFO @ Fri, 15 Feb 2019 07:26:54: 25000000 INFO @ Fri, 15 Feb 2019 07:26:56: 25000000 INFO @ Fri, 15 Feb 2019 07:27:00: 25000000 INFO @ Fri, 15 Feb 2019 07:27:01: 26000000 INFO @ Fri, 15 Feb 2019 07:27:02: 26000000 INFO @ Fri, 15 Feb 2019 07:27:08: 26000000 INFO @ Fri, 15 Feb 2019 07:27:08: 27000000 INFO @ Fri, 15 Feb 2019 07:27:09: 27000000 INFO @ Fri, 15 Feb 2019 07:27:15: 28000000 INFO @ Fri, 15 Feb 2019 07:27:15: 27000000 INFO @ Fri, 15 Feb 2019 07:27:16: 28000000 INFO @ Fri, 15 Feb 2019 07:27:21: 29000000 INFO @ Fri, 15 Feb 2019 07:27:23: 28000000 INFO @ Fri, 15 Feb 2019 07:27:23: 29000000 INFO @ Fri, 15 Feb 2019 07:27:28: 30000000 INFO @ Fri, 15 Feb 2019 07:27:30: 30000000 INFO @ Fri, 15 Feb 2019 07:27:30: 29000000 INFO @ Fri, 15 Feb 2019 07:27:34: 31000000 INFO @ Fri, 15 Feb 2019 07:27:36: 31000000 INFO @ Fri, 15 Feb 2019 07:27:37: 30000000 INFO @ Fri, 15 Feb 2019 07:27:41: 32000000 INFO @ Fri, 15 Feb 2019 07:27:43: 32000000 INFO @ Fri, 15 Feb 2019 07:27:44: 31000000 INFO @ Fri, 15 Feb 2019 07:27:47: 33000000 INFO @ Fri, 15 Feb 2019 07:27:50: 33000000 INFO @ Fri, 15 Feb 2019 07:27:50: 32000000 INFO @ Fri, 15 Feb 2019 07:27:54: 34000000 INFO @ Fri, 15 Feb 2019 07:27:56: 34000000 INFO @ Fri, 15 Feb 2019 07:27:57: 33000000 INFO @ Fri, 15 Feb 2019 07:28:00: 35000000 INFO @ Fri, 15 Feb 2019 07:28:03: 35000000 INFO @ Fri, 15 Feb 2019 07:28:04: 34000000 INFO @ Fri, 15 Feb 2019 07:28:07: 36000000 INFO @ Fri, 15 Feb 2019 07:28:09: 36000000 INFO @ Fri, 15 Feb 2019 07:28:11: 35000000 INFO @ Fri, 15 Feb 2019 07:28:13: 37000000 INFO @ Fri, 15 Feb 2019 07:28:16: 37000000 INFO @ Fri, 15 Feb 2019 07:28:18: 36000000 INFO @ Fri, 15 Feb 2019 07:28:20: 38000000 INFO @ Fri, 15 Feb 2019 07:28:22: 38000000 INFO @ Fri, 15 Feb 2019 07:28:24: 37000000 INFO @ Fri, 15 Feb 2019 07:28:27: 39000000 INFO @ Fri, 15 Feb 2019 07:28:29: 39000000 INFO @ Fri, 15 Feb 2019 07:28:31: 38000000 INFO @ Fri, 15 Feb 2019 07:28:34: 40000000 INFO @ Fri, 15 Feb 2019 07:28:35: 40000000 INFO @ Fri, 15 Feb 2019 07:28:38: 39000000 INFO @ Fri, 15 Feb 2019 07:28:40: 41000000 INFO @ Fri, 15 Feb 2019 07:28:41: 41000000 INFO @ Fri, 15 Feb 2019 07:28:44: 40000000 INFO @ Fri, 15 Feb 2019 07:28:47: 42000000 INFO @ Fri, 15 Feb 2019 07:28:48: 42000000 INFO @ Fri, 15 Feb 2019 07:28:51: 41000000 INFO @ Fri, 15 Feb 2019 07:28:54: 43000000 INFO @ Fri, 15 Feb 2019 07:28:55: 43000000 INFO @ Fri, 15 Feb 2019 07:28:58: 42000000 INFO @ Fri, 15 Feb 2019 07:29:01: 44000000 INFO @ Fri, 15 Feb 2019 07:29:02: 44000000 INFO @ Fri, 15 Feb 2019 07:29:04: 43000000 INFO @ Fri, 15 Feb 2019 07:29:08: 45000000 INFO @ Fri, 15 Feb 2019 07:29:08: 45000000 INFO @ Fri, 15 Feb 2019 07:29:11: 44000000 INFO @ Fri, 15 Feb 2019 07:29:14: 46000000 INFO @ Fri, 15 Feb 2019 07:29:15: 46000000 INFO @ Fri, 15 Feb 2019 07:29:18: 45000000 INFO @ Fri, 15 Feb 2019 07:29:21: 47000000 INFO @ Fri, 15 Feb 2019 07:29:21: 47000000 INFO @ Fri, 15 Feb 2019 07:29:25: 46000000 INFO @ Fri, 15 Feb 2019 07:29:28: 48000000 INFO @ Fri, 15 Feb 2019 07:29:28: 48000000 INFO @ Fri, 15 Feb 2019 07:29:31: 47000000 INFO @ Fri, 15 Feb 2019 07:29:34: 49000000 INFO @ Fri, 15 Feb 2019 07:29:35: 49000000 INFO @ Fri, 15 Feb 2019 07:29:38: 48000000 INFO @ Fri, 15 Feb 2019 07:29:40: 50000000 INFO @ Fri, 15 Feb 2019 07:29:41: 50000000 INFO @ Fri, 15 Feb 2019 07:29:45: 49000000 INFO @ Fri, 15 Feb 2019 07:29:46: 51000000 INFO @ Fri, 15 Feb 2019 07:29:48: 51000000 INFO @ Fri, 15 Feb 2019 07:29:51: 50000000 INFO @ Fri, 15 Feb 2019 07:29:53: 52000000 INFO @ Fri, 15 Feb 2019 07:29:55: 52000000 INFO @ Fri, 15 Feb 2019 07:29:58: 51000000 INFO @ Fri, 15 Feb 2019 07:29:59: 53000000 INFO @ Fri, 15 Feb 2019 07:30:02: 53000000 INFO @ Fri, 15 Feb 2019 07:30:04: 52000000 INFO @ Fri, 15 Feb 2019 07:30:05: 54000000 INFO @ Fri, 15 Feb 2019 07:30:08: 54000000 INFO @ Fri, 15 Feb 2019 07:30:11: 53000000 INFO @ Fri, 15 Feb 2019 07:30:12: 55000000 INFO @ Fri, 15 Feb 2019 07:30:15: 55000000 INFO @ Fri, 15 Feb 2019 07:30:17: 54000000 INFO @ Fri, 15 Feb 2019 07:30:18: 56000000 INFO @ Fri, 15 Feb 2019 07:30:22: 56000000 INFO @ Fri, 15 Feb 2019 07:30:24: 55000000 INFO @ Fri, 15 Feb 2019 07:30:25: 57000000 INFO @ Fri, 15 Feb 2019 07:30:29: 57000000 INFO @ Fri, 15 Feb 2019 07:30:31: 56000000 INFO @ Fri, 15 Feb 2019 07:30:31: 58000000 INFO @ Fri, 15 Feb 2019 07:30:36: 58000000 INFO @ Fri, 15 Feb 2019 07:30:37: 59000000 INFO @ Fri, 15 Feb 2019 07:30:37: 57000000 INFO @ Fri, 15 Feb 2019 07:30:42: 59000000 INFO @ Fri, 15 Feb 2019 07:30:44: 60000000 INFO @ Fri, 15 Feb 2019 07:30:44: 58000000 INFO @ Fri, 15 Feb 2019 07:30:45: #1 tag size is determined as 40 bps INFO @ Fri, 15 Feb 2019 07:30:45: #1 tag size = 40 INFO @ Fri, 15 Feb 2019 07:30:45: #1 total tags in treatment: 60115525 INFO @ Fri, 15 Feb 2019 07:30:45: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:30:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:30:47: #1 tags after filtering in treatment: 60115477 INFO @ Fri, 15 Feb 2019 07:30:47: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:30:47: #1 finished! INFO @ Fri, 15 Feb 2019 07:30:47: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:30:47: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:30:49: 60000000 INFO @ Fri, 15 Feb 2019 07:30:51: #1 tag size is determined as 40 bps INFO @ Fri, 15 Feb 2019 07:30:51: #1 tag size = 40 INFO @ Fri, 15 Feb 2019 07:30:51: #1 total tags in treatment: 60115525 INFO @ Fri, 15 Feb 2019 07:30:51: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:30:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:30:51: 59000000 INFO @ Fri, 15 Feb 2019 07:30:52: #2 number of paired peaks: 3848 INFO @ Fri, 15 Feb 2019 07:30:52: start model_add_line... INFO @ Fri, 15 Feb 2019 07:30:52: #1 tags after filtering in treatment: 60115477 INFO @ Fri, 15 Feb 2019 07:30:52: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:30:52: #1 finished! INFO @ Fri, 15 Feb 2019 07:30:52: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:30:52: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:30:52: start X-correlation... INFO @ Fri, 15 Feb 2019 07:30:52: end of X-cor INFO @ Fri, 15 Feb 2019 07:30:52: #2 finished! INFO @ Fri, 15 Feb 2019 07:30:52: #2 predicted fragment length is 40 bps INFO @ Fri, 15 Feb 2019 07:30:52: #2 alternative fragment length(s) may be 40 bps INFO @ Fri, 15 Feb 2019 07:30:52: #2.2 Generate R script for model : SRX3782474.20_model.r WARNING @ Fri, 15 Feb 2019 07:30:52: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:30:52: #2 You may need to consider one of the other alternative d(s): 40 WARNING @ Fri, 15 Feb 2019 07:30:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:30:52: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:30:52: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:30:57: #2 number of paired peaks: 3848 INFO @ Fri, 15 Feb 2019 07:30:57: start model_add_line... INFO @ Fri, 15 Feb 2019 07:30:57: 60000000 INFO @ Fri, 15 Feb 2019 07:30:57: start X-correlation... INFO @ Fri, 15 Feb 2019 07:30:57: end of X-cor INFO @ Fri, 15 Feb 2019 07:30:57: #2 finished! INFO @ Fri, 15 Feb 2019 07:30:57: #2 predicted fragment length is 40 bps INFO @ Fri, 15 Feb 2019 07:30:57: #2 alternative fragment length(s) may be 40 bps INFO @ Fri, 15 Feb 2019 07:30:57: #2.2 Generate R script for model : SRX3782474.10_model.r WARNING @ Fri, 15 Feb 2019 07:30:58: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:30:58: #2 You may need to consider one of the other alternative d(s): 40 WARNING @ Fri, 15 Feb 2019 07:30:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:30:58: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:30:58: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:30:58: #1 tag size is determined as 40 bps INFO @ Fri, 15 Feb 2019 07:30:58: #1 tag size = 40 INFO @ Fri, 15 Feb 2019 07:30:58: #1 total tags in treatment: 60115525 INFO @ Fri, 15 Feb 2019 07:30:58: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:30:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:31:00: #1 tags after filtering in treatment: 60115477 INFO @ Fri, 15 Feb 2019 07:31:00: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:31:00: #1 finished! INFO @ Fri, 15 Feb 2019 07:31:00: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:31:00: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:31:04: #2 number of paired peaks: 3848 INFO @ Fri, 15 Feb 2019 07:31:04: start model_add_line... INFO @ Fri, 15 Feb 2019 07:31:05: start X-correlation... INFO @ Fri, 15 Feb 2019 07:31:05: end of X-cor INFO @ Fri, 15 Feb 2019 07:31:05: #2 finished! INFO @ Fri, 15 Feb 2019 07:31:05: #2 predicted fragment length is 40 bps INFO @ Fri, 15 Feb 2019 07:31:05: #2 alternative fragment length(s) may be 40 bps INFO @ Fri, 15 Feb 2019 07:31:05: #2.2 Generate R script for model : SRX3782474.05_model.r WARNING @ Fri, 15 Feb 2019 07:31:05: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:31:05: #2 You may need to consider one of the other alternative d(s): 40 WARNING @ Fri, 15 Feb 2019 07:31:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:31:05: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:31:05: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:33:13: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:33:22: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:33:31: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:34:39: #4 Write output xls file... SRX3782474.10_peaks.xls INFO @ Fri, 15 Feb 2019 07:34:39: #4 Write peak in narrowPeak format file... SRX3782474.10_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:34:39: #4 Write summits bed file... SRX3782474.10_summits.bed INFO @ Fri, 15 Feb 2019 07:34:39: Done! pass1 - making usageList (41 chroms): 3 millis pass2 - checking and writing primary data (1246 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:34:46: #4 Write output xls file... SRX3782474.20_peaks.xls INFO @ Fri, 15 Feb 2019 07:34:46: #4 Write peak in narrowPeak format file... SRX3782474.20_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:34:46: #4 Write summits bed file... SRX3782474.20_summits.bed INFO @ Fri, 15 Feb 2019 07:34:46: Done! pass1 - making usageList (34 chroms): 4 millis pass2 - checking and writing primary data (612 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:34:54: #4 Write output xls file... SRX3782474.05_peaks.xls INFO @ Fri, 15 Feb 2019 07:34:55: #4 Write peak in narrowPeak format file... SRX3782474.05_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:34:55: #4 Write summits bed file... SRX3782474.05_summits.bed INFO @ Fri, 15 Feb 2019 07:34:55: Done! pass1 - making usageList (49 chroms): 3 millis pass2 - checking and writing primary data (2111 records, 4 fields): 8 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。