Job ID = 11632668 sra ファイルのダウンロード中... Completed: 1339045K bytes transferred in 33 seconds (324223K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 72191880 spots for /home/okishinya/chipatlas/results/rn6/SRX3360100/SRR6253206.sra Written 72191880 spots for /home/okishinya/chipatlas/results/rn6/SRX3360100/SRR6253206.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:11:54 72191880 reads; of these: 72191880 (100.00%) were unpaired; of these: 2710450 (3.75%) aligned 0 times 46966287 (65.06%) aligned exactly 1 time 22515143 (31.19%) aligned >1 times 96.25% overall alignment rate Time searching: 01:11:56 Overall time: 01:11:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 2982392 / 69481430 = 0.0429 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 15 Feb 2019 06:51:46: # Command line: callpeak -t SRX3360100.bam -f BAM -g 2.15e9 -n SRX3360100.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3360100.05 # format = BAM # ChIP-seq file = ['SRX3360100.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 06:51:46: # Command line: callpeak -t SRX3360100.bam -f BAM -g 2.15e9 -n SRX3360100.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3360100.20 # format = BAM # ChIP-seq file = ['SRX3360100.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 06:51:46: # Command line: callpeak -t SRX3360100.bam -f BAM -g 2.15e9 -n SRX3360100.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3360100.10 # format = BAM # ChIP-seq file = ['SRX3360100.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 06:51:46: #1 read tag files... INFO @ Fri, 15 Feb 2019 06:51:46: #1 read tag files... INFO @ Fri, 15 Feb 2019 06:51:46: #1 read tag files... INFO @ Fri, 15 Feb 2019 06:51:46: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 06:51:46: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 06:51:46: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 06:51:53: 1000000 INFO @ Fri, 15 Feb 2019 06:51:54: 1000000 INFO @ Fri, 15 Feb 2019 06:51:54: 1000000 INFO @ Fri, 15 Feb 2019 06:51:59: 2000000 INFO @ Fri, 15 Feb 2019 06:52:01: 2000000 INFO @ Fri, 15 Feb 2019 06:52:01: 2000000 INFO @ Fri, 15 Feb 2019 06:52:05: 3000000 INFO @ Fri, 15 Feb 2019 06:52:08: 3000000 INFO @ Fri, 15 Feb 2019 06:52:08: 3000000 INFO @ Fri, 15 Feb 2019 06:52:12: 4000000 INFO @ Fri, 15 Feb 2019 06:52:15: 4000000 INFO @ Fri, 15 Feb 2019 06:52:15: 4000000 INFO @ Fri, 15 Feb 2019 06:52:18: 5000000 INFO @ Fri, 15 Feb 2019 06:52:22: 5000000 INFO @ Fri, 15 Feb 2019 06:52:22: 5000000 INFO @ Fri, 15 Feb 2019 06:52:25: 6000000 INFO @ Fri, 15 Feb 2019 06:52:29: 6000000 INFO @ Fri, 15 Feb 2019 06:52:29: 6000000 INFO @ Fri, 15 Feb 2019 06:52:31: 7000000 INFO @ Fri, 15 Feb 2019 06:52:35: 7000000 INFO @ Fri, 15 Feb 2019 06:52:35: 7000000 INFO @ Fri, 15 Feb 2019 06:52:37: 8000000 INFO @ Fri, 15 Feb 2019 06:52:42: 8000000 INFO @ Fri, 15 Feb 2019 06:52:42: 8000000 INFO @ Fri, 15 Feb 2019 06:52:43: 9000000 INFO @ Fri, 15 Feb 2019 06:52:49: 9000000 INFO @ Fri, 15 Feb 2019 06:52:49: 9000000 INFO @ Fri, 15 Feb 2019 06:52:50: 10000000 INFO @ Fri, 15 Feb 2019 06:52:56: 10000000 INFO @ Fri, 15 Feb 2019 06:52:56: 10000000 INFO @ Fri, 15 Feb 2019 06:52:56: 11000000 INFO @ Fri, 15 Feb 2019 06:53:02: 12000000 INFO @ Fri, 15 Feb 2019 06:53:03: 11000000 INFO @ Fri, 15 Feb 2019 06:53:03: 11000000 INFO @ Fri, 15 Feb 2019 06:53:09: 13000000 INFO @ Fri, 15 Feb 2019 06:53:10: 12000000 INFO @ Fri, 15 Feb 2019 06:53:10: 12000000 INFO @ Fri, 15 Feb 2019 06:53:15: 14000000 INFO @ Fri, 15 Feb 2019 06:53:17: 13000000 INFO @ Fri, 15 Feb 2019 06:53:17: 13000000 INFO @ Fri, 15 Feb 2019 06:53:21: 15000000 INFO @ Fri, 15 Feb 2019 06:53:24: 14000000 INFO @ Fri, 15 Feb 2019 06:53:24: 14000000 INFO @ Fri, 15 Feb 2019 06:53:28: 16000000 INFO @ Fri, 15 Feb 2019 06:53:32: 15000000 INFO @ Fri, 15 Feb 2019 06:53:32: 15000000 INFO @ Fri, 15 Feb 2019 06:53:34: 17000000 INFO @ Fri, 15 Feb 2019 06:53:39: 16000000 INFO @ Fri, 15 Feb 2019 06:53:39: 16000000 INFO @ Fri, 15 Feb 2019 06:53:40: 18000000 INFO @ Fri, 15 Feb 2019 06:53:47: 19000000 INFO @ Fri, 15 Feb 2019 06:53:47: 17000000 INFO @ Fri, 15 Feb 2019 06:53:47: 17000000 INFO @ Fri, 15 Feb 2019 06:53:53: 20000000 INFO @ Fri, 15 Feb 2019 06:53:53: 18000000 INFO @ Fri, 15 Feb 2019 06:53:54: 18000000 INFO @ Fri, 15 Feb 2019 06:53:59: 21000000 INFO @ Fri, 15 Feb 2019 06:54:00: 19000000 INFO @ Fri, 15 Feb 2019 06:54:00: 19000000 INFO @ Fri, 15 Feb 2019 06:54:06: 22000000 INFO @ Fri, 15 Feb 2019 06:54:07: 20000000 INFO @ Fri, 15 Feb 2019 06:54:07: 20000000 INFO @ Fri, 15 Feb 2019 06:54:12: 23000000 INFO @ Fri, 15 Feb 2019 06:54:14: 21000000 INFO @ Fri, 15 Feb 2019 06:54:14: 21000000 INFO @ Fri, 15 Feb 2019 06:54:18: 24000000 INFO @ Fri, 15 Feb 2019 06:54:21: 22000000 INFO @ Fri, 15 Feb 2019 06:54:21: 22000000 INFO @ Fri, 15 Feb 2019 06:54:24: 25000000 INFO @ Fri, 15 Feb 2019 06:54:28: 23000000 INFO @ Fri, 15 Feb 2019 06:54:28: 23000000 INFO @ Fri, 15 Feb 2019 06:54:31: 26000000 INFO @ Fri, 15 Feb 2019 06:54:34: 24000000 INFO @ Fri, 15 Feb 2019 06:54:35: 24000000 INFO @ Fri, 15 Feb 2019 06:54:37: 27000000 INFO @ Fri, 15 Feb 2019 06:54:41: 25000000 INFO @ Fri, 15 Feb 2019 06:54:41: 25000000 INFO @ Fri, 15 Feb 2019 06:54:43: 28000000 INFO @ Fri, 15 Feb 2019 06:54:48: 26000000 INFO @ Fri, 15 Feb 2019 06:54:48: 26000000 INFO @ Fri, 15 Feb 2019 06:54:50: 29000000 INFO @ Fri, 15 Feb 2019 06:54:55: 27000000 INFO @ Fri, 15 Feb 2019 06:54:55: 27000000 INFO @ Fri, 15 Feb 2019 06:54:56: 30000000 INFO @ Fri, 15 Feb 2019 06:55:02: 31000000 INFO @ Fri, 15 Feb 2019 06:55:02: 28000000 INFO @ Fri, 15 Feb 2019 06:55:03: 28000000 INFO @ Fri, 15 Feb 2019 06:55:09: 32000000 INFO @ Fri, 15 Feb 2019 06:55:10: 29000000 INFO @ Fri, 15 Feb 2019 06:55:10: 29000000 INFO @ Fri, 15 Feb 2019 06:55:15: 33000000 INFO @ Fri, 15 Feb 2019 06:55:18: 30000000 INFO @ Fri, 15 Feb 2019 06:55:18: 30000000 INFO @ Fri, 15 Feb 2019 06:55:21: 34000000 INFO @ Fri, 15 Feb 2019 06:55:25: 31000000 INFO @ Fri, 15 Feb 2019 06:55:26: 31000000 INFO @ Fri, 15 Feb 2019 06:55:28: 35000000 INFO @ Fri, 15 Feb 2019 06:55:32: 32000000 INFO @ Fri, 15 Feb 2019 06:55:33: 32000000 INFO @ Fri, 15 Feb 2019 06:55:34: 36000000 INFO @ Fri, 15 Feb 2019 06:55:39: 33000000 INFO @ Fri, 15 Feb 2019 06:55:39: 33000000 INFO @ Fri, 15 Feb 2019 06:55:40: 37000000 INFO @ Fri, 15 Feb 2019 06:55:46: 34000000 INFO @ Fri, 15 Feb 2019 06:55:46: 34000000 INFO @ Fri, 15 Feb 2019 06:55:46: 38000000 INFO @ Fri, 15 Feb 2019 06:55:53: 39000000 INFO @ Fri, 15 Feb 2019 06:55:53: 35000000 INFO @ Fri, 15 Feb 2019 06:55:53: 35000000 INFO @ Fri, 15 Feb 2019 06:55:59: 40000000 INFO @ Fri, 15 Feb 2019 06:56:00: 36000000 INFO @ Fri, 15 Feb 2019 06:56:00: 36000000 INFO @ Fri, 15 Feb 2019 06:56:05: 41000000 INFO @ Fri, 15 Feb 2019 06:56:07: 37000000 INFO @ Fri, 15 Feb 2019 06:56:07: 37000000 INFO @ Fri, 15 Feb 2019 06:56:12: 42000000 INFO @ Fri, 15 Feb 2019 06:56:14: 38000000 INFO @ Fri, 15 Feb 2019 06:56:14: 38000000 INFO @ Fri, 15 Feb 2019 06:56:18: 43000000 INFO @ Fri, 15 Feb 2019 06:56:21: 39000000 INFO @ Fri, 15 Feb 2019 06:56:21: 39000000 INFO @ Fri, 15 Feb 2019 06:56:24: 44000000 INFO @ Fri, 15 Feb 2019 06:56:28: 40000000 INFO @ Fri, 15 Feb 2019 06:56:28: 40000000 INFO @ Fri, 15 Feb 2019 06:56:31: 45000000 INFO @ Fri, 15 Feb 2019 06:56:35: 41000000 INFO @ Fri, 15 Feb 2019 06:56:35: 41000000 INFO @ Fri, 15 Feb 2019 06:56:37: 46000000 INFO @ Fri, 15 Feb 2019 06:56:42: 42000000 INFO @ Fri, 15 Feb 2019 06:56:42: 42000000 INFO @ Fri, 15 Feb 2019 06:56:43: 47000000 INFO @ Fri, 15 Feb 2019 06:56:49: 43000000 INFO @ Fri, 15 Feb 2019 06:56:50: 43000000 INFO @ Fri, 15 Feb 2019 06:56:50: 48000000 INFO @ Fri, 15 Feb 2019 06:56:56: 49000000 INFO @ Fri, 15 Feb 2019 06:56:57: 44000000 INFO @ Fri, 15 Feb 2019 06:56:57: 44000000 INFO @ Fri, 15 Feb 2019 06:57:02: 50000000 INFO @ Fri, 15 Feb 2019 06:57:04: 45000000 INFO @ Fri, 15 Feb 2019 06:57:05: 45000000 INFO @ Fri, 15 Feb 2019 06:57:09: 51000000 INFO @ Fri, 15 Feb 2019 06:57:12: 46000000 INFO @ Fri, 15 Feb 2019 06:57:12: 46000000 INFO @ Fri, 15 Feb 2019 06:57:15: 52000000 INFO @ Fri, 15 Feb 2019 06:57:19: 47000000 INFO @ Fri, 15 Feb 2019 06:57:20: 47000000 INFO @ Fri, 15 Feb 2019 06:57:21: 53000000 INFO @ Fri, 15 Feb 2019 06:57:26: 48000000 INFO @ Fri, 15 Feb 2019 06:57:27: 48000000 INFO @ Fri, 15 Feb 2019 06:57:28: 54000000 INFO @ Fri, 15 Feb 2019 06:57:33: 49000000 INFO @ Fri, 15 Feb 2019 06:57:34: 49000000 INFO @ Fri, 15 Feb 2019 06:57:34: 55000000 INFO @ Fri, 15 Feb 2019 06:57:40: 50000000 INFO @ Fri, 15 Feb 2019 06:57:40: 56000000 INFO @ Fri, 15 Feb 2019 06:57:41: 50000000 INFO @ Fri, 15 Feb 2019 06:57:47: 57000000 INFO @ Fri, 15 Feb 2019 06:57:47: 51000000 INFO @ Fri, 15 Feb 2019 06:57:48: 51000000 INFO @ Fri, 15 Feb 2019 06:57:53: 58000000 INFO @ Fri, 15 Feb 2019 06:57:54: 52000000 INFO @ Fri, 15 Feb 2019 06:57:55: 52000000 INFO @ Fri, 15 Feb 2019 06:57:59: 59000000 INFO @ Fri, 15 Feb 2019 06:58:01: 53000000 INFO @ Fri, 15 Feb 2019 06:58:02: 53000000 INFO @ Fri, 15 Feb 2019 06:58:06: 60000000 INFO @ Fri, 15 Feb 2019 06:58:08: 54000000 INFO @ Fri, 15 Feb 2019 06:58:09: 54000000 INFO @ Fri, 15 Feb 2019 06:58:12: 61000000 INFO @ Fri, 15 Feb 2019 06:58:15: 55000000 INFO @ Fri, 15 Feb 2019 06:58:16: 55000000 INFO @ Fri, 15 Feb 2019 06:58:18: 62000000 INFO @ Fri, 15 Feb 2019 06:58:22: 56000000 INFO @ Fri, 15 Feb 2019 06:58:23: 56000000 INFO @ Fri, 15 Feb 2019 06:58:25: 63000000 INFO @ Fri, 15 Feb 2019 06:58:29: 57000000 INFO @ Fri, 15 Feb 2019 06:58:30: 57000000 INFO @ Fri, 15 Feb 2019 06:58:31: 64000000 INFO @ Fri, 15 Feb 2019 06:58:37: 58000000 INFO @ Fri, 15 Feb 2019 06:58:38: 65000000 INFO @ Fri, 15 Feb 2019 06:58:38: 58000000 INFO @ Fri, 15 Feb 2019 06:58:44: 66000000 INFO @ Fri, 15 Feb 2019 06:58:45: 59000000 INFO @ Fri, 15 Feb 2019 06:58:46: 59000000 INFO @ Fri, 15 Feb 2019 06:58:48: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 06:58:48: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 06:58:48: #1 total tags in treatment: 66499038 INFO @ Fri, 15 Feb 2019 06:58:48: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 06:58:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 06:58:49: #1 tags after filtering in treatment: 66499004 INFO @ Fri, 15 Feb 2019 06:58:49: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 06:58:49: #1 finished! INFO @ Fri, 15 Feb 2019 06:58:49: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 06:58:49: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 06:58:53: 60000000 INFO @ Fri, 15 Feb 2019 06:58:53: 60000000 INFO @ Fri, 15 Feb 2019 06:58:55: #2 number of paired peaks: 7027 INFO @ Fri, 15 Feb 2019 06:58:55: start model_add_line... INFO @ Fri, 15 Feb 2019 06:58:56: start X-correlation... INFO @ Fri, 15 Feb 2019 06:58:56: end of X-cor INFO @ Fri, 15 Feb 2019 06:58:56: #2 finished! INFO @ Fri, 15 Feb 2019 06:58:56: #2 predicted fragment length is 53 bps INFO @ Fri, 15 Feb 2019 06:58:56: #2 alternative fragment length(s) may be 53 bps INFO @ Fri, 15 Feb 2019 06:58:56: #2.2 Generate R script for model : SRX3360100.10_model.r WARNING @ Fri, 15 Feb 2019 06:58:56: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 06:58:56: #2 You may need to consider one of the other alternative d(s): 53 WARNING @ Fri, 15 Feb 2019 06:58:56: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 06:58:56: #3 Call peaks... INFO @ Fri, 15 Feb 2019 06:58:56: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 06:59:00: 61000000 INFO @ Fri, 15 Feb 2019 06:59:01: 61000000 INFO @ Fri, 15 Feb 2019 06:59:07: 62000000 INFO @ Fri, 15 Feb 2019 06:59:08: 62000000 INFO @ Fri, 15 Feb 2019 06:59:14: 63000000 INFO @ Fri, 15 Feb 2019 06:59:15: 63000000 INFO @ Fri, 15 Feb 2019 06:59:22: 64000000 INFO @ Fri, 15 Feb 2019 06:59:22: 64000000 INFO @ Fri, 15 Feb 2019 06:59:29: 65000000 INFO @ Fri, 15 Feb 2019 06:59:29: 65000000 INFO @ Fri, 15 Feb 2019 06:59:36: 66000000 INFO @ Fri, 15 Feb 2019 06:59:37: 66000000 INFO @ Fri, 15 Feb 2019 06:59:40: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 06:59:40: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 06:59:40: #1 total tags in treatment: 66499038 INFO @ Fri, 15 Feb 2019 06:59:40: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 06:59:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 06:59:41: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 06:59:41: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 06:59:41: #1 total tags in treatment: 66499038 INFO @ Fri, 15 Feb 2019 06:59:41: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 06:59:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 06:59:41: #1 tags after filtering in treatment: 66499004 INFO @ Fri, 15 Feb 2019 06:59:41: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 06:59:41: #1 finished! INFO @ Fri, 15 Feb 2019 06:59:41: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 06:59:41: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 06:59:42: #1 tags after filtering in treatment: 66499004 INFO @ Fri, 15 Feb 2019 06:59:42: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 06:59:42: #1 finished! INFO @ Fri, 15 Feb 2019 06:59:42: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 06:59:42: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 06:59:47: #2 number of paired peaks: 7027 INFO @ Fri, 15 Feb 2019 06:59:47: start model_add_line... INFO @ Fri, 15 Feb 2019 06:59:48: #2 number of paired peaks: 7027 INFO @ Fri, 15 Feb 2019 06:59:48: start model_add_line... INFO @ Fri, 15 Feb 2019 06:59:48: start X-correlation... INFO @ Fri, 15 Feb 2019 06:59:48: end of X-cor INFO @ Fri, 15 Feb 2019 06:59:48: #2 finished! INFO @ Fri, 15 Feb 2019 06:59:48: #2 predicted fragment length is 53 bps INFO @ Fri, 15 Feb 2019 06:59:48: #2 alternative fragment length(s) may be 53 bps INFO @ Fri, 15 Feb 2019 06:59:48: #2.2 Generate R script for model : SRX3360100.05_model.r WARNING @ Fri, 15 Feb 2019 06:59:48: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 06:59:48: #2 You may need to consider one of the other alternative d(s): 53 WARNING @ Fri, 15 Feb 2019 06:59:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 06:59:48: #3 Call peaks... INFO @ Fri, 15 Feb 2019 06:59:48: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 06:59:48: start X-correlation... INFO @ Fri, 15 Feb 2019 06:59:48: end of X-cor INFO @ Fri, 15 Feb 2019 06:59:48: #2 finished! INFO @ Fri, 15 Feb 2019 06:59:48: #2 predicted fragment length is 53 bps INFO @ Fri, 15 Feb 2019 06:59:48: #2 alternative fragment length(s) may be 53 bps INFO @ Fri, 15 Feb 2019 06:59:48: #2.2 Generate R script for model : SRX3360100.20_model.r WARNING @ Fri, 15 Feb 2019 06:59:48: #2 Since the d (53) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 06:59:48: #2 You may need to consider one of the other alternative d(s): 53 WARNING @ Fri, 15 Feb 2019 06:59:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 06:59:48: #3 Call peaks... INFO @ Fri, 15 Feb 2019 06:59:48: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:01:54: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:02:25: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:02:29: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:03:30: #4 Write output xls file... SRX3360100.10_peaks.xls INFO @ Fri, 15 Feb 2019 07:03:31: #4 Write peak in narrowPeak format file... SRX3360100.10_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:03:31: #4 Write summits bed file... SRX3360100.10_summits.bed INFO @ Fri, 15 Feb 2019 07:03:31: Done! pass1 - making usageList (53 chroms): 4 millis pass2 - checking and writing primary data (1893 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:03:57: #4 Write output xls file... SRX3360100.20_peaks.xls INFO @ Fri, 15 Feb 2019 07:03:57: #4 Write peak in narrowPeak format file... SRX3360100.20_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:03:57: #4 Write summits bed file... SRX3360100.20_summits.bed INFO @ Fri, 15 Feb 2019 07:03:57: Done! pass1 - making usageList (40 chroms): 7 millis pass2 - checking and writing primary data (783 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:03:58: #4 Write output xls file... SRX3360100.05_peaks.xls INFO @ Fri, 15 Feb 2019 07:03:58: #4 Write peak in narrowPeak format file... SRX3360100.05_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:03:58: #4 Write summits bed file... SRX3360100.05_summits.bed INFO @ Fri, 15 Feb 2019 07:03:58: Done! pass1 - making usageList (68 chroms): 7 millis pass2 - checking and writing primary data (3992 records, 4 fields): 20 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。