Job ID = 11632666 sra ファイルのダウンロード中... Completed: 1418291K bytes transferred in 25 seconds (461366K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 86507805 spots for /home/okishinya/chipatlas/results/rn6/SRX3360098/SRR6253204.sra Written 86507805 spots for /home/okishinya/chipatlas/results/rn6/SRX3360098/SRR6253204.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:06 Time loading mirror index: 00:00:03 Multiseed full-index search: 01:12:21 86507805 reads; of these: 86507805 (100.00%) were unpaired; of these: 2329685 (2.69%) aligned 0 times 58685437 (67.84%) aligned exactly 1 time 25492683 (29.47%) aligned >1 times 97.31% overall alignment rate Time searching: 01:12:31 Overall time: 01:12:31 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 4001400 / 84178120 = 0.0475 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 15 Feb 2019 07:45:21: # Command line: callpeak -t SRX3360098.bam -f BAM -g 2.15e9 -n SRX3360098.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3360098.20 # format = BAM # ChIP-seq file = ['SRX3360098.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:45:21: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:45:21: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:45:21: # Command line: callpeak -t SRX3360098.bam -f BAM -g 2.15e9 -n SRX3360098.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3360098.05 # format = BAM # ChIP-seq file = ['SRX3360098.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:45:21: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:45:21: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:45:21: # Command line: callpeak -t SRX3360098.bam -f BAM -g 2.15e9 -n SRX3360098.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3360098.10 # format = BAM # ChIP-seq file = ['SRX3360098.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 15 Feb 2019 07:45:21: #1 read tag files... INFO @ Fri, 15 Feb 2019 07:45:21: #1 read treatment tags... INFO @ Fri, 15 Feb 2019 07:45:28: 1000000 INFO @ Fri, 15 Feb 2019 07:45:28: 1000000 INFO @ Fri, 15 Feb 2019 07:45:28: 1000000 INFO @ Fri, 15 Feb 2019 07:45:34: 2000000 INFO @ Fri, 15 Feb 2019 07:45:35: 2000000 INFO @ Fri, 15 Feb 2019 07:45:35: 2000000 INFO @ Fri, 15 Feb 2019 07:45:41: 3000000 INFO @ Fri, 15 Feb 2019 07:45:42: 3000000 INFO @ Fri, 15 Feb 2019 07:45:42: 3000000 INFO @ Fri, 15 Feb 2019 07:45:49: 4000000 INFO @ Fri, 15 Feb 2019 07:45:49: 4000000 INFO @ Fri, 15 Feb 2019 07:45:50: 4000000 INFO @ Fri, 15 Feb 2019 07:45:56: 5000000 INFO @ Fri, 15 Feb 2019 07:45:56: 5000000 INFO @ Fri, 15 Feb 2019 07:45:57: 5000000 INFO @ Fri, 15 Feb 2019 07:46:03: 6000000 INFO @ Fri, 15 Feb 2019 07:46:03: 6000000 INFO @ Fri, 15 Feb 2019 07:46:04: 6000000 INFO @ Fri, 15 Feb 2019 07:46:09: 7000000 INFO @ Fri, 15 Feb 2019 07:46:10: 7000000 INFO @ Fri, 15 Feb 2019 07:46:12: 7000000 INFO @ Fri, 15 Feb 2019 07:46:16: 8000000 INFO @ Fri, 15 Feb 2019 07:46:18: 8000000 INFO @ Fri, 15 Feb 2019 07:46:19: 8000000 INFO @ Fri, 15 Feb 2019 07:46:23: 9000000 INFO @ Fri, 15 Feb 2019 07:46:25: 9000000 INFO @ Fri, 15 Feb 2019 07:46:27: 9000000 INFO @ Fri, 15 Feb 2019 07:46:29: 10000000 INFO @ Fri, 15 Feb 2019 07:46:32: 10000000 INFO @ Fri, 15 Feb 2019 07:46:34: 10000000 INFO @ Fri, 15 Feb 2019 07:46:36: 11000000 INFO @ Fri, 15 Feb 2019 07:46:40: 11000000 INFO @ Fri, 15 Feb 2019 07:46:41: 11000000 INFO @ Fri, 15 Feb 2019 07:46:43: 12000000 INFO @ Fri, 15 Feb 2019 07:46:47: 12000000 INFO @ Fri, 15 Feb 2019 07:46:49: 12000000 INFO @ Fri, 15 Feb 2019 07:46:50: 13000000 INFO @ Fri, 15 Feb 2019 07:46:55: 13000000 INFO @ Fri, 15 Feb 2019 07:46:56: 13000000 INFO @ Fri, 15 Feb 2019 07:46:56: 14000000 INFO @ Fri, 15 Feb 2019 07:47:02: 14000000 INFO @ Fri, 15 Feb 2019 07:47:03: 15000000 INFO @ Fri, 15 Feb 2019 07:47:04: 14000000 INFO @ Fri, 15 Feb 2019 07:47:09: 15000000 INFO @ Fri, 15 Feb 2019 07:47:10: 16000000 INFO @ Fri, 15 Feb 2019 07:47:11: 15000000 INFO @ Fri, 15 Feb 2019 07:47:17: 17000000 INFO @ Fri, 15 Feb 2019 07:47:17: 16000000 INFO @ Fri, 15 Feb 2019 07:47:18: 16000000 INFO @ Fri, 15 Feb 2019 07:47:23: 18000000 INFO @ Fri, 15 Feb 2019 07:47:24: 17000000 INFO @ Fri, 15 Feb 2019 07:47:25: 17000000 INFO @ Fri, 15 Feb 2019 07:47:30: 19000000 INFO @ Fri, 15 Feb 2019 07:47:31: 18000000 INFO @ Fri, 15 Feb 2019 07:47:32: 18000000 INFO @ Fri, 15 Feb 2019 07:47:37: 20000000 INFO @ Fri, 15 Feb 2019 07:47:38: 19000000 INFO @ Fri, 15 Feb 2019 07:47:40: 19000000 INFO @ Fri, 15 Feb 2019 07:47:43: 21000000 INFO @ Fri, 15 Feb 2019 07:47:46: 20000000 INFO @ Fri, 15 Feb 2019 07:47:46: 20000000 INFO @ Fri, 15 Feb 2019 07:47:51: 22000000 INFO @ Fri, 15 Feb 2019 07:47:53: 21000000 INFO @ Fri, 15 Feb 2019 07:47:53: 21000000 INFO @ Fri, 15 Feb 2019 07:47:57: 23000000 INFO @ Fri, 15 Feb 2019 07:47:59: 22000000 INFO @ Fri, 15 Feb 2019 07:48:00: 22000000 INFO @ Fri, 15 Feb 2019 07:48:04: 24000000 INFO @ Fri, 15 Feb 2019 07:48:06: 23000000 INFO @ Fri, 15 Feb 2019 07:48:06: 23000000 INFO @ Fri, 15 Feb 2019 07:48:10: 25000000 INFO @ Fri, 15 Feb 2019 07:48:13: 24000000 INFO @ Fri, 15 Feb 2019 07:48:13: 24000000 INFO @ Fri, 15 Feb 2019 07:48:17: 26000000 INFO @ Fri, 15 Feb 2019 07:48:20: 25000000 INFO @ Fri, 15 Feb 2019 07:48:20: 25000000 INFO @ Fri, 15 Feb 2019 07:48:24: 27000000 INFO @ Fri, 15 Feb 2019 07:48:27: 26000000 INFO @ Fri, 15 Feb 2019 07:48:27: 26000000 INFO @ Fri, 15 Feb 2019 07:48:30: 28000000 INFO @ Fri, 15 Feb 2019 07:48:33: 27000000 INFO @ Fri, 15 Feb 2019 07:48:34: 27000000 INFO @ Fri, 15 Feb 2019 07:48:37: 29000000 INFO @ Fri, 15 Feb 2019 07:48:40: 28000000 INFO @ Fri, 15 Feb 2019 07:48:41: 28000000 INFO @ Fri, 15 Feb 2019 07:48:44: 30000000 INFO @ Fri, 15 Feb 2019 07:48:46: 29000000 INFO @ Fri, 15 Feb 2019 07:48:48: 29000000 INFO @ Fri, 15 Feb 2019 07:48:50: 31000000 INFO @ Fri, 15 Feb 2019 07:48:53: 30000000 INFO @ Fri, 15 Feb 2019 07:48:55: 30000000 INFO @ Fri, 15 Feb 2019 07:48:57: 32000000 INFO @ Fri, 15 Feb 2019 07:49:00: 31000000 INFO @ Fri, 15 Feb 2019 07:49:02: 31000000 INFO @ Fri, 15 Feb 2019 07:49:03: 33000000 INFO @ Fri, 15 Feb 2019 07:49:07: 32000000 INFO @ Fri, 15 Feb 2019 07:49:09: 32000000 INFO @ Fri, 15 Feb 2019 07:49:10: 34000000 INFO @ Fri, 15 Feb 2019 07:49:14: 33000000 INFO @ Fri, 15 Feb 2019 07:49:16: 33000000 INFO @ Fri, 15 Feb 2019 07:49:16: 35000000 INFO @ Fri, 15 Feb 2019 07:49:21: 34000000 INFO @ Fri, 15 Feb 2019 07:49:23: 36000000 INFO @ Fri, 15 Feb 2019 07:49:23: 34000000 INFO @ Fri, 15 Feb 2019 07:49:27: 35000000 INFO @ Fri, 15 Feb 2019 07:49:29: 37000000 INFO @ Fri, 15 Feb 2019 07:49:30: 35000000 INFO @ Fri, 15 Feb 2019 07:49:34: 36000000 INFO @ Fri, 15 Feb 2019 07:49:36: 38000000 INFO @ Fri, 15 Feb 2019 07:49:37: 36000000 INFO @ Fri, 15 Feb 2019 07:49:41: 37000000 INFO @ Fri, 15 Feb 2019 07:49:43: 39000000 INFO @ Fri, 15 Feb 2019 07:49:44: 37000000 INFO @ Fri, 15 Feb 2019 07:49:47: 38000000 INFO @ Fri, 15 Feb 2019 07:49:49: 40000000 INFO @ Fri, 15 Feb 2019 07:49:52: 38000000 INFO @ Fri, 15 Feb 2019 07:49:55: 39000000 INFO @ Fri, 15 Feb 2019 07:49:57: 41000000 INFO @ Fri, 15 Feb 2019 07:50:00: 39000000 INFO @ Fri, 15 Feb 2019 07:50:03: 40000000 INFO @ Fri, 15 Feb 2019 07:50:05: 42000000 INFO @ Fri, 15 Feb 2019 07:50:09: 40000000 INFO @ Fri, 15 Feb 2019 07:50:11: 41000000 INFO @ Fri, 15 Feb 2019 07:50:13: 43000000 INFO @ Fri, 15 Feb 2019 07:50:18: 41000000 INFO @ Fri, 15 Feb 2019 07:50:20: 42000000 INFO @ Fri, 15 Feb 2019 07:50:21: 44000000 INFO @ Fri, 15 Feb 2019 07:50:26: 42000000 INFO @ Fri, 15 Feb 2019 07:50:28: 43000000 INFO @ Fri, 15 Feb 2019 07:50:28: 45000000 INFO @ Fri, 15 Feb 2019 07:50:35: 43000000 INFO @ Fri, 15 Feb 2019 07:50:36: 46000000 INFO @ Fri, 15 Feb 2019 07:50:36: 44000000 INFO @ Fri, 15 Feb 2019 07:50:43: 44000000 INFO @ Fri, 15 Feb 2019 07:50:43: 47000000 INFO @ Fri, 15 Feb 2019 07:50:44: 45000000 INFO @ Fri, 15 Feb 2019 07:50:50: 45000000 INFO @ Fri, 15 Feb 2019 07:50:50: 48000000 INFO @ Fri, 15 Feb 2019 07:50:51: 46000000 INFO @ Fri, 15 Feb 2019 07:50:57: 46000000 INFO @ Fri, 15 Feb 2019 07:50:57: 49000000 INFO @ Fri, 15 Feb 2019 07:50:57: 47000000 INFO @ Fri, 15 Feb 2019 07:51:04: 48000000 INFO @ Fri, 15 Feb 2019 07:51:04: 47000000 INFO @ Fri, 15 Feb 2019 07:51:04: 50000000 INFO @ Fri, 15 Feb 2019 07:51:10: 49000000 INFO @ Fri, 15 Feb 2019 07:51:11: 51000000 INFO @ Fri, 15 Feb 2019 07:51:11: 48000000 INFO @ Fri, 15 Feb 2019 07:51:17: 50000000 INFO @ Fri, 15 Feb 2019 07:51:17: 52000000 INFO @ Fri, 15 Feb 2019 07:51:18: 49000000 INFO @ Fri, 15 Feb 2019 07:51:23: 51000000 INFO @ Fri, 15 Feb 2019 07:51:24: 53000000 INFO @ Fri, 15 Feb 2019 07:51:25: 50000000 INFO @ Fri, 15 Feb 2019 07:51:30: 52000000 INFO @ Fri, 15 Feb 2019 07:51:31: 54000000 INFO @ Fri, 15 Feb 2019 07:51:32: 51000000 INFO @ Fri, 15 Feb 2019 07:51:36: 53000000 INFO @ Fri, 15 Feb 2019 07:51:37: 55000000 INFO @ Fri, 15 Feb 2019 07:51:38: 52000000 INFO @ Fri, 15 Feb 2019 07:51:43: 54000000 INFO @ Fri, 15 Feb 2019 07:51:44: 56000000 INFO @ Fri, 15 Feb 2019 07:51:46: 53000000 INFO @ Fri, 15 Feb 2019 07:51:50: 55000000 INFO @ Fri, 15 Feb 2019 07:51:50: 57000000 INFO @ Fri, 15 Feb 2019 07:51:53: 54000000 INFO @ Fri, 15 Feb 2019 07:51:57: 58000000 INFO @ Fri, 15 Feb 2019 07:51:57: 56000000 INFO @ Fri, 15 Feb 2019 07:52:01: 55000000 INFO @ Fri, 15 Feb 2019 07:52:03: 59000000 INFO @ Fri, 15 Feb 2019 07:52:04: 57000000 INFO @ Fri, 15 Feb 2019 07:52:08: 56000000 INFO @ Fri, 15 Feb 2019 07:52:10: 60000000 INFO @ Fri, 15 Feb 2019 07:52:11: 58000000 INFO @ Fri, 15 Feb 2019 07:52:15: 57000000 INFO @ Fri, 15 Feb 2019 07:52:17: 61000000 INFO @ Fri, 15 Feb 2019 07:52:18: 59000000 INFO @ Fri, 15 Feb 2019 07:52:22: 58000000 INFO @ Fri, 15 Feb 2019 07:52:23: 62000000 INFO @ Fri, 15 Feb 2019 07:52:25: 60000000 INFO @ Fri, 15 Feb 2019 07:52:29: 59000000 INFO @ Fri, 15 Feb 2019 07:52:30: 63000000 INFO @ Fri, 15 Feb 2019 07:52:32: 61000000 INFO @ Fri, 15 Feb 2019 07:52:36: 64000000 INFO @ Fri, 15 Feb 2019 07:52:37: 60000000 INFO @ Fri, 15 Feb 2019 07:52:39: 62000000 INFO @ Fri, 15 Feb 2019 07:52:43: 65000000 INFO @ Fri, 15 Feb 2019 07:52:44: 61000000 INFO @ Fri, 15 Feb 2019 07:52:46: 63000000 INFO @ Fri, 15 Feb 2019 07:52:49: 66000000 INFO @ Fri, 15 Feb 2019 07:52:51: 62000000 INFO @ Fri, 15 Feb 2019 07:52:53: 64000000 INFO @ Fri, 15 Feb 2019 07:52:56: 67000000 INFO @ Fri, 15 Feb 2019 07:52:59: 63000000 INFO @ Fri, 15 Feb 2019 07:53:01: 65000000 INFO @ Fri, 15 Feb 2019 07:53:03: 68000000 INFO @ Fri, 15 Feb 2019 07:53:06: 64000000 INFO @ Fri, 15 Feb 2019 07:53:08: 66000000 INFO @ Fri, 15 Feb 2019 07:53:10: 69000000 INFO @ Fri, 15 Feb 2019 07:53:13: 65000000 INFO @ Fri, 15 Feb 2019 07:53:15: 67000000 INFO @ Fri, 15 Feb 2019 07:53:16: 70000000 INFO @ Fri, 15 Feb 2019 07:53:21: 66000000 INFO @ Fri, 15 Feb 2019 07:53:23: 68000000 INFO @ Fri, 15 Feb 2019 07:53:23: 71000000 INFO @ Fri, 15 Feb 2019 07:53:28: 67000000 INFO @ Fri, 15 Feb 2019 07:53:30: 72000000 INFO @ Fri, 15 Feb 2019 07:53:30: 69000000 INFO @ Fri, 15 Feb 2019 07:53:35: 68000000 INFO @ Fri, 15 Feb 2019 07:53:36: 73000000 INFO @ Fri, 15 Feb 2019 07:53:37: 70000000 INFO @ Fri, 15 Feb 2019 07:53:43: 69000000 INFO @ Fri, 15 Feb 2019 07:53:43: 74000000 INFO @ Fri, 15 Feb 2019 07:53:45: 71000000 INFO @ Fri, 15 Feb 2019 07:53:50: 75000000 INFO @ Fri, 15 Feb 2019 07:53:50: 70000000 INFO @ Fri, 15 Feb 2019 07:53:52: 72000000 INFO @ Fri, 15 Feb 2019 07:53:57: 76000000 INFO @ Fri, 15 Feb 2019 07:53:57: 71000000 INFO @ Fri, 15 Feb 2019 07:53:59: 73000000 INFO @ Fri, 15 Feb 2019 07:54:04: 77000000 INFO @ Fri, 15 Feb 2019 07:54:05: 72000000 INFO @ Fri, 15 Feb 2019 07:54:07: 74000000 INFO @ Fri, 15 Feb 2019 07:54:11: 78000000 INFO @ Fri, 15 Feb 2019 07:54:12: 73000000 INFO @ Fri, 15 Feb 2019 07:54:14: 75000000 INFO @ Fri, 15 Feb 2019 07:54:18: 79000000 INFO @ Fri, 15 Feb 2019 07:54:20: 74000000 INFO @ Fri, 15 Feb 2019 07:54:21: 76000000 INFO @ Fri, 15 Feb 2019 07:54:25: 80000000 INFO @ Fri, 15 Feb 2019 07:54:26: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:54:26: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:54:26: #1 total tags in treatment: 80176720 INFO @ Fri, 15 Feb 2019 07:54:26: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:54:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:54:27: 75000000 INFO @ Fri, 15 Feb 2019 07:54:28: 77000000 INFO @ Fri, 15 Feb 2019 07:54:28: #1 tags after filtering in treatment: 80176690 INFO @ Fri, 15 Feb 2019 07:54:28: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:54:28: #1 finished! INFO @ Fri, 15 Feb 2019 07:54:28: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:54:28: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:54:34: 76000000 INFO @ Fri, 15 Feb 2019 07:54:35: #2 number of paired peaks: 6755 INFO @ Fri, 15 Feb 2019 07:54:35: start model_add_line... INFO @ Fri, 15 Feb 2019 07:54:36: 78000000 INFO @ Fri, 15 Feb 2019 07:54:36: start X-correlation... INFO @ Fri, 15 Feb 2019 07:54:36: end of X-cor INFO @ Fri, 15 Feb 2019 07:54:36: #2 finished! INFO @ Fri, 15 Feb 2019 07:54:36: #2 predicted fragment length is 52 bps INFO @ Fri, 15 Feb 2019 07:54:36: #2 alternative fragment length(s) may be 52 bps INFO @ Fri, 15 Feb 2019 07:54:36: #2.2 Generate R script for model : SRX3360098.10_model.r WARNING @ Fri, 15 Feb 2019 07:54:36: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:54:36: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Fri, 15 Feb 2019 07:54:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:54:36: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:54:36: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:54:42: 77000000 INFO @ Fri, 15 Feb 2019 07:54:43: 79000000 INFO @ Fri, 15 Feb 2019 07:54:49: 78000000 INFO @ Fri, 15 Feb 2019 07:54:50: 80000000 INFO @ Fri, 15 Feb 2019 07:54:52: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:54:52: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:54:52: #1 total tags in treatment: 80176720 INFO @ Fri, 15 Feb 2019 07:54:52: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:54:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:54:54: #1 tags after filtering in treatment: 80176690 INFO @ Fri, 15 Feb 2019 07:54:54: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:54:54: #1 finished! INFO @ Fri, 15 Feb 2019 07:54:54: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:54:54: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:54:56: 79000000 INFO @ Fri, 15 Feb 2019 07:55:01: #2 number of paired peaks: 6755 INFO @ Fri, 15 Feb 2019 07:55:01: start model_add_line... INFO @ Fri, 15 Feb 2019 07:55:02: start X-correlation... INFO @ Fri, 15 Feb 2019 07:55:02: end of X-cor INFO @ Fri, 15 Feb 2019 07:55:02: #2 finished! INFO @ Fri, 15 Feb 2019 07:55:02: #2 predicted fragment length is 52 bps INFO @ Fri, 15 Feb 2019 07:55:02: #2 alternative fragment length(s) may be 52 bps INFO @ Fri, 15 Feb 2019 07:55:02: #2.2 Generate R script for model : SRX3360098.05_model.r WARNING @ Fri, 15 Feb 2019 07:55:02: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:55:02: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Fri, 15 Feb 2019 07:55:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:55:02: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:55:02: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:55:02: 80000000 INFO @ Fri, 15 Feb 2019 07:55:04: #1 tag size is determined as 51 bps INFO @ Fri, 15 Feb 2019 07:55:04: #1 tag size = 51 INFO @ Fri, 15 Feb 2019 07:55:04: #1 total tags in treatment: 80176720 INFO @ Fri, 15 Feb 2019 07:55:04: #1 user defined the maximum tags... INFO @ Fri, 15 Feb 2019 07:55:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 15 Feb 2019 07:55:06: #1 tags after filtering in treatment: 80176690 INFO @ Fri, 15 Feb 2019 07:55:06: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 15 Feb 2019 07:55:06: #1 finished! INFO @ Fri, 15 Feb 2019 07:55:06: #2 Build Peak Model... INFO @ Fri, 15 Feb 2019 07:55:06: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 15 Feb 2019 07:55:13: #2 number of paired peaks: 6755 INFO @ Fri, 15 Feb 2019 07:55:13: start model_add_line... INFO @ Fri, 15 Feb 2019 07:55:14: start X-correlation... INFO @ Fri, 15 Feb 2019 07:55:14: end of X-cor INFO @ Fri, 15 Feb 2019 07:55:14: #2 finished! INFO @ Fri, 15 Feb 2019 07:55:14: #2 predicted fragment length is 52 bps INFO @ Fri, 15 Feb 2019 07:55:14: #2 alternative fragment length(s) may be 52 bps INFO @ Fri, 15 Feb 2019 07:55:14: #2.2 Generate R script for model : SRX3360098.20_model.r WARNING @ Fri, 15 Feb 2019 07:55:14: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 15 Feb 2019 07:55:14: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Fri, 15 Feb 2019 07:55:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 15 Feb 2019 07:55:14: #3 Call peaks... INFO @ Fri, 15 Feb 2019 07:55:14: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 15 Feb 2019 07:57:44: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:58:02: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:58:15: #3 Call peaks for each chromosome... INFO @ Fri, 15 Feb 2019 07:59:26: #4 Write output xls file... SRX3360098.10_peaks.xls INFO @ Fri, 15 Feb 2019 07:59:26: #4 Write peak in narrowPeak format file... SRX3360098.10_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:59:26: #4 Write summits bed file... SRX3360098.10_summits.bed INFO @ Fri, 15 Feb 2019 07:59:26: Done! pass1 - making usageList (53 chroms): 3 millis pass2 - checking and writing primary data (1851 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 07:59:44: #4 Write output xls file... SRX3360098.05_peaks.xls INFO @ Fri, 15 Feb 2019 07:59:44: #4 Write peak in narrowPeak format file... SRX3360098.05_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 07:59:44: #4 Write summits bed file... SRX3360098.05_summits.bed INFO @ Fri, 15 Feb 2019 07:59:44: Done! pass1 - making usageList (67 chroms): 3 millis pass2 - checking and writing primary data (3585 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Fri, 15 Feb 2019 08:00:09: #4 Write output xls file... SRX3360098.20_peaks.xls INFO @ Fri, 15 Feb 2019 08:00:09: #4 Write peak in narrowPeak format file... SRX3360098.20_peaks.narrowPeak INFO @ Fri, 15 Feb 2019 08:00:09: #4 Write summits bed file... SRX3360098.20_summits.bed INFO @ Fri, 15 Feb 2019 08:00:09: Done! pass1 - making usageList (43 chroms): 4 millis pass2 - checking and writing primary data (769 records, 4 fields): 11 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。