Job ID = 10194852 sra ファイルのダウンロード中... Completed: 2001741K bytes transferred in 24 seconds (679720K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 99428449 spots for /home/okishinya/chipatlas/results/rn6/SRX1977141/SRR3952273.sra Written 99428449 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 02:37:29 99428449 reads; of these: 99428449 (100.00%) were unpaired; of these: 16483144 (16.58%) aligned 0 times 46503060 (46.77%) aligned exactly 1 time 36442245 (36.65%) aligned >1 times 83.42% overall alignment rate Time searching: 02:37:31 Overall time: 02:37:31 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 8319181 / 82945305 = 0.1003 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 11 Nov 2017 05:53:02: # Command line: callpeak -t SRX1977141.bam -f BAM -g 2.15e9 -n SRX1977141.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1977141.10 # format = BAM # ChIP-seq file = ['SRX1977141.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 05:53:02: # Command line: callpeak -t SRX1977141.bam -f BAM -g 2.15e9 -n SRX1977141.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1977141.20 # format = BAM # ChIP-seq file = ['SRX1977141.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 05:53:02: # Command line: callpeak -t SRX1977141.bam -f BAM -g 2.15e9 -n SRX1977141.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1977141.05 # format = BAM # ChIP-seq file = ['SRX1977141.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 05:53:02: #1 read tag files... INFO @ Sat, 11 Nov 2017 05:53:02: #1 read tag files... INFO @ Sat, 11 Nov 2017 05:53:02: #1 read tag files... INFO @ Sat, 11 Nov 2017 05:53:02: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 05:53:02: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 05:53:02: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 05:53:10: 1000000 INFO @ Sat, 11 Nov 2017 05:53:10: 1000000 INFO @ Sat, 11 Nov 2017 05:53:10: 1000000 INFO @ Sat, 11 Nov 2017 05:53:18: 2000000 INFO @ Sat, 11 Nov 2017 05:53:18: 2000000 INFO @ Sat, 11 Nov 2017 05:53:18: 2000000 INFO @ Sat, 11 Nov 2017 05:53:25: 3000000 INFO @ Sat, 11 Nov 2017 05:53:25: 3000000 INFO @ Sat, 11 Nov 2017 05:53:25: 3000000 INFO @ Sat, 11 Nov 2017 05:53:33: 4000000 INFO @ Sat, 11 Nov 2017 05:53:33: 4000000 INFO @ Sat, 11 Nov 2017 05:53:33: 4000000 INFO @ Sat, 11 Nov 2017 05:53:40: 5000000 INFO @ Sat, 11 Nov 2017 05:53:40: 5000000 INFO @ Sat, 11 Nov 2017 05:53:40: 5000000 INFO @ Sat, 11 Nov 2017 05:53:48: 6000000 INFO @ Sat, 11 Nov 2017 05:53:48: 6000000 INFO @ Sat, 11 Nov 2017 05:53:48: 6000000 INFO @ Sat, 11 Nov 2017 05:53:55: 7000000 INFO @ Sat, 11 Nov 2017 05:53:55: 7000000 INFO @ Sat, 11 Nov 2017 05:53:55: 7000000 INFO @ Sat, 11 Nov 2017 05:54:03: 8000000 INFO @ Sat, 11 Nov 2017 05:54:03: 8000000 INFO @ Sat, 11 Nov 2017 05:54:03: 8000000 INFO @ Sat, 11 Nov 2017 05:54:10: 9000000 INFO @ Sat, 11 Nov 2017 05:54:10: 9000000 INFO @ Sat, 11 Nov 2017 05:54:10: 9000000 INFO @ Sat, 11 Nov 2017 05:54:18: 10000000 INFO @ Sat, 11 Nov 2017 05:54:18: 10000000 INFO @ Sat, 11 Nov 2017 05:54:18: 10000000 INFO @ Sat, 11 Nov 2017 05:54:26: 11000000 INFO @ Sat, 11 Nov 2017 05:54:26: 11000000 INFO @ Sat, 11 Nov 2017 05:54:26: 11000000 INFO @ Sat, 11 Nov 2017 05:54:33: 12000000 INFO @ Sat, 11 Nov 2017 05:54:33: 12000000 INFO @ Sat, 11 Nov 2017 05:54:33: 12000000 INFO @ Sat, 11 Nov 2017 05:54:41: 13000000 INFO @ Sat, 11 Nov 2017 05:54:41: 13000000 INFO @ Sat, 11 Nov 2017 05:54:41: 13000000 INFO @ Sat, 11 Nov 2017 05:54:48: 14000000 INFO @ Sat, 11 Nov 2017 05:54:48: 14000000 INFO @ Sat, 11 Nov 2017 05:54:48: 14000000 INFO @ Sat, 11 Nov 2017 05:54:56: 15000000 INFO @ Sat, 11 Nov 2017 05:54:56: 15000000 INFO @ Sat, 11 Nov 2017 05:54:56: 15000000 INFO @ Sat, 11 Nov 2017 05:55:03: 16000000 INFO @ Sat, 11 Nov 2017 05:55:03: 16000000 INFO @ Sat, 11 Nov 2017 05:55:03: 16000000 INFO @ Sat, 11 Nov 2017 05:55:10: 17000000 INFO @ Sat, 11 Nov 2017 05:55:10: 17000000 INFO @ Sat, 11 Nov 2017 05:55:10: 17000000 INFO @ Sat, 11 Nov 2017 05:55:18: 18000000 INFO @ Sat, 11 Nov 2017 05:55:18: 18000000 INFO @ Sat, 11 Nov 2017 05:55:18: 18000000 INFO @ Sat, 11 Nov 2017 05:55:25: 19000000 INFO @ Sat, 11 Nov 2017 05:55:25: 19000000 INFO @ Sat, 11 Nov 2017 05:55:25: 19000000 INFO @ Sat, 11 Nov 2017 05:55:33: 20000000 INFO @ Sat, 11 Nov 2017 05:55:33: 20000000 INFO @ Sat, 11 Nov 2017 05:55:33: 20000000 INFO @ Sat, 11 Nov 2017 05:55:41: 21000000 INFO @ Sat, 11 Nov 2017 05:55:41: 21000000 INFO @ Sat, 11 Nov 2017 05:55:41: 21000000 INFO @ Sat, 11 Nov 2017 05:55:49: 22000000 INFO @ Sat, 11 Nov 2017 05:55:49: 22000000 INFO @ Sat, 11 Nov 2017 05:55:49: 22000000 INFO @ Sat, 11 Nov 2017 05:55:55: 23000000 INFO @ Sat, 11 Nov 2017 05:55:56: 23000000 INFO @ Sat, 11 Nov 2017 05:55:56: 23000000 INFO @ Sat, 11 Nov 2017 05:56:02: 24000000 INFO @ Sat, 11 Nov 2017 05:56:03: 24000000 INFO @ Sat, 11 Nov 2017 05:56:03: 24000000 INFO @ Sat, 11 Nov 2017 05:56:09: 25000000 INFO @ Sat, 11 Nov 2017 05:56:10: 25000000 INFO @ Sat, 11 Nov 2017 05:56:10: 25000000 INFO @ Sat, 11 Nov 2017 05:56:15: 26000000 INFO @ Sat, 11 Nov 2017 05:56:17: 26000000 INFO @ Sat, 11 Nov 2017 05:56:17: 26000000 INFO @ Sat, 11 Nov 2017 05:56:22: 27000000 INFO @ Sat, 11 Nov 2017 05:56:24: 27000000 INFO @ Sat, 11 Nov 2017 05:56:24: 27000000 INFO @ Sat, 11 Nov 2017 05:56:29: 28000000 INFO @ Sat, 11 Nov 2017 05:56:31: 28000000 INFO @ Sat, 11 Nov 2017 05:56:31: 28000000 INFO @ Sat, 11 Nov 2017 05:56:36: 29000000 INFO @ Sat, 11 Nov 2017 05:56:38: 29000000 INFO @ Sat, 11 Nov 2017 05:56:38: 29000000 INFO @ Sat, 11 Nov 2017 05:56:43: 30000000 INFO @ Sat, 11 Nov 2017 05:56:46: 30000000 INFO @ Sat, 11 Nov 2017 05:56:46: 30000000 INFO @ Sat, 11 Nov 2017 05:56:51: 31000000 INFO @ Sat, 11 Nov 2017 05:56:53: 31000000 INFO @ Sat, 11 Nov 2017 05:56:53: 31000000 INFO @ Sat, 11 Nov 2017 05:56:59: 32000000 INFO @ Sat, 11 Nov 2017 05:57:01: 32000000 INFO @ Sat, 11 Nov 2017 05:57:01: 32000000 INFO @ Sat, 11 Nov 2017 05:57:07: 33000000 INFO @ Sat, 11 Nov 2017 05:57:09: 33000000 INFO @ Sat, 11 Nov 2017 05:57:09: 33000000 INFO @ Sat, 11 Nov 2017 05:57:15: 34000000 INFO @ Sat, 11 Nov 2017 05:57:17: 34000000 INFO @ Sat, 11 Nov 2017 05:57:17: 34000000 INFO @ Sat, 11 Nov 2017 05:57:23: 35000000 INFO @ Sat, 11 Nov 2017 05:57:25: 35000000 INFO @ Sat, 11 Nov 2017 05:57:25: 35000000 INFO @ Sat, 11 Nov 2017 05:57:31: 36000000 INFO @ Sat, 11 Nov 2017 05:57:33: 36000000 INFO @ Sat, 11 Nov 2017 05:57:33: 36000000 INFO @ Sat, 11 Nov 2017 05:57:40: 37000000 INFO @ Sat, 11 Nov 2017 05:57:42: 37000000 INFO @ Sat, 11 Nov 2017 05:57:42: 37000000 INFO @ Sat, 11 Nov 2017 05:57:48: 38000000 INFO @ Sat, 11 Nov 2017 05:57:50: 38000000 INFO @ Sat, 11 Nov 2017 05:57:50: 38000000 INFO @ Sat, 11 Nov 2017 05:57:56: 39000000 INFO @ Sat, 11 Nov 2017 05:57:58: 39000000 INFO @ Sat, 11 Nov 2017 05:57:58: 39000000 INFO @ Sat, 11 Nov 2017 05:58:04: 40000000 INFO @ Sat, 11 Nov 2017 05:58:06: 40000000 INFO @ Sat, 11 Nov 2017 05:58:06: 40000000 INFO @ Sat, 11 Nov 2017 05:58:12: 41000000 INFO @ Sat, 11 Nov 2017 05:58:14: 41000000 INFO @ Sat, 11 Nov 2017 05:58:14: 41000000 INFO @ Sat, 11 Nov 2017 05:58:21: 42000000 INFO @ Sat, 11 Nov 2017 05:58:22: 42000000 INFO @ Sat, 11 Nov 2017 05:58:23: 42000000 INFO @ Sat, 11 Nov 2017 05:58:29: 43000000 INFO @ Sat, 11 Nov 2017 05:58:31: 43000000 INFO @ Sat, 11 Nov 2017 05:58:31: 43000000 INFO @ Sat, 11 Nov 2017 05:58:37: 44000000 INFO @ Sat, 11 Nov 2017 05:58:39: 44000000 INFO @ Sat, 11 Nov 2017 05:58:39: 44000000 INFO @ Sat, 11 Nov 2017 05:58:44: 45000000 INFO @ Sat, 11 Nov 2017 05:58:46: 45000000 INFO @ Sat, 11 Nov 2017 05:58:46: 45000000 INFO @ Sat, 11 Nov 2017 05:58:51: 46000000 INFO @ Sat, 11 Nov 2017 05:58:53: 46000000 INFO @ Sat, 11 Nov 2017 05:58:53: 46000000 INFO @ Sat, 11 Nov 2017 05:58:58: 47000000 INFO @ Sat, 11 Nov 2017 05:59:00: 47000000 INFO @ Sat, 11 Nov 2017 05:59:00: 47000000 INFO @ Sat, 11 Nov 2017 05:59:04: 48000000 INFO @ Sat, 11 Nov 2017 05:59:06: 48000000 INFO @ Sat, 11 Nov 2017 05:59:07: 48000000 INFO @ Sat, 11 Nov 2017 05:59:11: 49000000 INFO @ Sat, 11 Nov 2017 05:59:13: 49000000 INFO @ Sat, 11 Nov 2017 05:59:14: 49000000 INFO @ Sat, 11 Nov 2017 05:59:18: 50000000 INFO @ Sat, 11 Nov 2017 05:59:20: 50000000 INFO @ Sat, 11 Nov 2017 05:59:21: 50000000 INFO @ Sat, 11 Nov 2017 05:59:25: 51000000 INFO @ Sat, 11 Nov 2017 05:59:27: 51000000 INFO @ Sat, 11 Nov 2017 05:59:28: 51000000 INFO @ Sat, 11 Nov 2017 05:59:31: 52000000 INFO @ Sat, 11 Nov 2017 05:59:34: 52000000 INFO @ Sat, 11 Nov 2017 05:59:35: 52000000 INFO @ Sat, 11 Nov 2017 05:59:38: 53000000 INFO @ Sat, 11 Nov 2017 05:59:41: 53000000 INFO @ Sat, 11 Nov 2017 05:59:42: 53000000 INFO @ Sat, 11 Nov 2017 05:59:45: 54000000 INFO @ Sat, 11 Nov 2017 05:59:49: 54000000 INFO @ Sat, 11 Nov 2017 05:59:49: 54000000 INFO @ Sat, 11 Nov 2017 05:59:52: 55000000 INFO @ Sat, 11 Nov 2017 05:59:56: 55000000 INFO @ Sat, 11 Nov 2017 05:59:57: 55000000 INFO @ Sat, 11 Nov 2017 05:59:58: 56000000 INFO @ Sat, 11 Nov 2017 06:00:03: 56000000 INFO @ Sat, 11 Nov 2017 06:00:04: 56000000 INFO @ Sat, 11 Nov 2017 06:00:05: 57000000 INFO @ Sat, 11 Nov 2017 06:00:11: 57000000 INFO @ Sat, 11 Nov 2017 06:00:12: 57000000 INFO @ Sat, 11 Nov 2017 06:00:12: 58000000 INFO @ Sat, 11 Nov 2017 06:00:18: 58000000 INFO @ Sat, 11 Nov 2017 06:00:19: 59000000 INFO @ Sat, 11 Nov 2017 06:00:19: 58000000 INFO @ Sat, 11 Nov 2017 06:00:25: 60000000 INFO @ Sat, 11 Nov 2017 06:00:25: 59000000 INFO @ Sat, 11 Nov 2017 06:00:26: 59000000 INFO @ Sat, 11 Nov 2017 06:00:32: 61000000 INFO @ Sat, 11 Nov 2017 06:00:33: 60000000 INFO @ Sat, 11 Nov 2017 06:00:34: 60000000 INFO @ Sat, 11 Nov 2017 06:00:39: 62000000 INFO @ Sat, 11 Nov 2017 06:00:40: 61000000 INFO @ Sat, 11 Nov 2017 06:00:41: 61000000 INFO @ Sat, 11 Nov 2017 06:00:45: 63000000 INFO @ Sat, 11 Nov 2017 06:00:47: 62000000 INFO @ Sat, 11 Nov 2017 06:00:48: 62000000 INFO @ Sat, 11 Nov 2017 06:00:52: 64000000 INFO @ Sat, 11 Nov 2017 06:00:55: 63000000 INFO @ Sat, 11 Nov 2017 06:00:56: 63000000 INFO @ Sat, 11 Nov 2017 06:00:59: 65000000 INFO @ Sat, 11 Nov 2017 06:01:02: 64000000 INFO @ Sat, 11 Nov 2017 06:01:03: 64000000 INFO @ Sat, 11 Nov 2017 06:01:06: 66000000 INFO @ Sat, 11 Nov 2017 06:01:09: 65000000 INFO @ Sat, 11 Nov 2017 06:01:11: 65000000 INFO @ Sat, 11 Nov 2017 06:01:12: 67000000 INFO @ Sat, 11 Nov 2017 06:01:16: 66000000 INFO @ Sat, 11 Nov 2017 06:01:18: 66000000 INFO @ Sat, 11 Nov 2017 06:01:19: 68000000 INFO @ Sat, 11 Nov 2017 06:01:24: 67000000 INFO @ Sat, 11 Nov 2017 06:01:25: 67000000 INFO @ Sat, 11 Nov 2017 06:01:26: 69000000 INFO @ Sat, 11 Nov 2017 06:01:31: 68000000 INFO @ Sat, 11 Nov 2017 06:01:33: 68000000 INFO @ Sat, 11 Nov 2017 06:01:33: 70000000 INFO @ Sat, 11 Nov 2017 06:01:38: 69000000 INFO @ Sat, 11 Nov 2017 06:01:39: 71000000 INFO @ Sat, 11 Nov 2017 06:01:40: 69000000 INFO @ Sat, 11 Nov 2017 06:01:46: 70000000 INFO @ Sat, 11 Nov 2017 06:01:47: 72000000 INFO @ Sat, 11 Nov 2017 06:01:48: 70000000 INFO @ Sat, 11 Nov 2017 06:01:54: 71000000 INFO @ Sat, 11 Nov 2017 06:01:55: 73000000 INFO @ Sat, 11 Nov 2017 06:01:56: 71000000 INFO @ Sat, 11 Nov 2017 06:02:02: 72000000 INFO @ Sat, 11 Nov 2017 06:02:03: 74000000 INFO @ Sat, 11 Nov 2017 06:02:04: 72000000 INFO @ Sat, 11 Nov 2017 06:02:09: #1 tag size is determined as 51 bps INFO @ Sat, 11 Nov 2017 06:02:09: #1 tag size = 51 INFO @ Sat, 11 Nov 2017 06:02:09: #1 total tags in treatment: 74626124 INFO @ Sat, 11 Nov 2017 06:02:09: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 06:02:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 06:02:10: 73000000 INFO @ Sat, 11 Nov 2017 06:02:11: #1 tags after filtering in treatment: 74626100 INFO @ Sat, 11 Nov 2017 06:02:11: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 06:02:11: #1 finished! INFO @ Sat, 11 Nov 2017 06:02:11: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 06:02:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 06:02:12: 73000000 INFO @ Sat, 11 Nov 2017 06:02:17: 74000000 INFO @ Sat, 11 Nov 2017 06:02:17: #2 number of paired peaks: 11895 INFO @ Sat, 11 Nov 2017 06:02:17: start model_add_line... INFO @ Sat, 11 Nov 2017 06:02:18: start X-correlation... INFO @ Sat, 11 Nov 2017 06:02:18: end of X-cor INFO @ Sat, 11 Nov 2017 06:02:18: #2 finished! INFO @ Sat, 11 Nov 2017 06:02:18: #2 predicted fragment length is 61 bps INFO @ Sat, 11 Nov 2017 06:02:18: #2 alternative fragment length(s) may be 61 bps INFO @ Sat, 11 Nov 2017 06:02:18: #2.2 Generate R script for model : SRX1977141.05_model.r WARNING @ Sat, 11 Nov 2017 06:02:18: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 06:02:18: #2 You may need to consider one of the other alternative d(s): 61 WARNING @ Sat, 11 Nov 2017 06:02:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 06:02:18: #3 Call peaks... INFO @ Sat, 11 Nov 2017 06:02:19: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 06:02:20: 74000000 INFO @ Sat, 11 Nov 2017 06:02:23: #1 tag size is determined as 51 bps INFO @ Sat, 11 Nov 2017 06:02:23: #1 tag size = 51 INFO @ Sat, 11 Nov 2017 06:02:23: #1 total tags in treatment: 74626124 INFO @ Sat, 11 Nov 2017 06:02:23: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 06:02:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 06:02:24: #1 tags after filtering in treatment: 74626100 INFO @ Sat, 11 Nov 2017 06:02:24: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 06:02:24: #1 finished! INFO @ Sat, 11 Nov 2017 06:02:24: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 06:02:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 06:02:25: #1 tag size is determined as 51 bps INFO @ Sat, 11 Nov 2017 06:02:25: #1 tag size = 51 INFO @ Sat, 11 Nov 2017 06:02:25: #1 total tags in treatment: 74626124 INFO @ Sat, 11 Nov 2017 06:02:25: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 06:02:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 06:02:26: #1 tags after filtering in treatment: 74626100 INFO @ Sat, 11 Nov 2017 06:02:26: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 06:02:26: #1 finished! INFO @ Sat, 11 Nov 2017 06:02:26: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 06:02:26: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 06:02:31: #2 number of paired peaks: 11895 INFO @ Sat, 11 Nov 2017 06:02:31: start model_add_line... INFO @ Sat, 11 Nov 2017 06:02:32: start X-correlation... INFO @ Sat, 11 Nov 2017 06:02:32: end of X-cor INFO @ Sat, 11 Nov 2017 06:02:32: #2 finished! INFO @ Sat, 11 Nov 2017 06:02:32: #2 predicted fragment length is 61 bps INFO @ Sat, 11 Nov 2017 06:02:32: #2 alternative fragment length(s) may be 61 bps INFO @ Sat, 11 Nov 2017 06:02:32: #2.2 Generate R script for model : SRX1977141.20_model.r WARNING @ Sat, 11 Nov 2017 06:02:32: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 06:02:32: #2 You may need to consider one of the other alternative d(s): 61 WARNING @ Sat, 11 Nov 2017 06:02:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 06:02:32: #3 Call peaks... INFO @ Sat, 11 Nov 2017 06:02:32: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 06:02:33: #2 number of paired peaks: 11895 INFO @ Sat, 11 Nov 2017 06:02:33: start model_add_line... INFO @ Sat, 11 Nov 2017 06:02:34: start X-correlation... INFO @ Sat, 11 Nov 2017 06:02:34: end of X-cor INFO @ Sat, 11 Nov 2017 06:02:34: #2 finished! INFO @ Sat, 11 Nov 2017 06:02:34: #2 predicted fragment length is 61 bps INFO @ Sat, 11 Nov 2017 06:02:34: #2 alternative fragment length(s) may be 61 bps INFO @ Sat, 11 Nov 2017 06:02:34: #2.2 Generate R script for model : SRX1977141.10_model.r WARNING @ Sat, 11 Nov 2017 06:02:34: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 06:02:34: #2 You may need to consider one of the other alternative d(s): 61 WARNING @ Sat, 11 Nov 2017 06:02:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 06:02:34: #3 Call peaks... INFO @ Sat, 11 Nov 2017 06:02:34: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 06:05:23: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 06:05:35: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 06:05:35: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 06:07:08: #4 Write output xls file... SRX1977141.05_peaks.xls INFO @ Sat, 11 Nov 2017 06:07:09: #4 Write peak in narrowPeak format file... SRX1977141.05_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 06:07:09: #4 Write summits bed file... SRX1977141.05_summits.bed INFO @ Sat, 11 Nov 2017 06:07:09: Done! pass1 - making usageList (198 chroms): 8 millis pass2 - checking and writing primary data (38316 records, 4 fields): 50 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 06:07:14: #4 Write output xls file... SRX1977141.10_peaks.xls INFO @ Sat, 11 Nov 2017 06:07:14: #4 Write peak in narrowPeak format file... SRX1977141.10_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 06:07:14: #4 Write summits bed file... SRX1977141.10_summits.bed INFO @ Sat, 11 Nov 2017 06:07:14: Done! pass1 - making usageList (106 chroms): 2 millis pass2 - checking and writing primary data (8797 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 06:07:19: #4 Write output xls file... SRX1977141.20_peaks.xls INFO @ Sat, 11 Nov 2017 06:07:19: #4 Write peak in narrowPeak format file... SRX1977141.20_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 06:07:19: #4 Write summits bed file... SRX1977141.20_summits.bed INFO @ Sat, 11 Nov 2017 06:07:19: Done! pass1 - making usageList (60 chroms): 1 millis pass2 - checking and writing primary data (1981 records, 4 fields): 6 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。