Job ID = 10194805 sra ファイルのダウンロード中... Completed: 2278646K bytes transferred in 30 seconds (612728K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 84587641 spots for /home/okishinya/chipatlas/results/rn6/SRX1819031/SRR3624107.sra Written 84587641 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:25:32 84587641 reads; of these: 84587641 (100.00%) were unpaired; of these: 4799030 (5.67%) aligned 0 times 59812763 (70.71%) aligned exactly 1 time 19975848 (23.62%) aligned >1 times 94.33% overall alignment rate Time searching: 01:25:37 Overall time: 01:25:37 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 8796153 / 79788611 = 0.1102 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 10 Nov 2017 23:36:32: # Command line: callpeak -t SRX1819031.bam -f BAM -g 2.15e9 -n SRX1819031.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1819031.05 # format = BAM # ChIP-seq file = ['SRX1819031.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Nov 2017 23:36:32: # Command line: callpeak -t SRX1819031.bam -f BAM -g 2.15e9 -n SRX1819031.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1819031.20 # format = BAM # ChIP-seq file = ['SRX1819031.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Nov 2017 23:36:32: # Command line: callpeak -t SRX1819031.bam -f BAM -g 2.15e9 -n SRX1819031.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1819031.10 # format = BAM # ChIP-seq file = ['SRX1819031.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Nov 2017 23:36:32: #1 read tag files... INFO @ Fri, 10 Nov 2017 23:36:32: #1 read tag files... INFO @ Fri, 10 Nov 2017 23:36:32: #1 read tag files... INFO @ Fri, 10 Nov 2017 23:36:32: #1 read treatment tags... INFO @ Fri, 10 Nov 2017 23:36:32: #1 read treatment tags... INFO @ Fri, 10 Nov 2017 23:36:32: #1 read treatment tags... INFO @ Fri, 10 Nov 2017 23:36:46: 1000000 INFO @ Fri, 10 Nov 2017 23:36:49: 1000000 INFO @ Fri, 10 Nov 2017 23:36:51: 1000000 INFO @ Fri, 10 Nov 2017 23:36:59: 2000000 INFO @ Fri, 10 Nov 2017 23:37:04: 2000000 INFO @ Fri, 10 Nov 2017 23:37:10: 2000000 INFO @ Fri, 10 Nov 2017 23:37:12: 3000000 INFO @ Fri, 10 Nov 2017 23:37:21: 3000000 INFO @ Fri, 10 Nov 2017 23:37:25: 4000000 INFO @ Fri, 10 Nov 2017 23:37:28: 3000000 INFO @ Fri, 10 Nov 2017 23:37:35: 4000000 INFO @ Fri, 10 Nov 2017 23:37:40: 5000000 INFO @ Fri, 10 Nov 2017 23:37:45: 4000000 INFO @ Fri, 10 Nov 2017 23:37:51: 5000000 INFO @ Fri, 10 Nov 2017 23:37:59: 6000000 INFO @ Fri, 10 Nov 2017 23:38:04: 5000000 INFO @ Fri, 10 Nov 2017 23:38:07: 6000000 INFO @ Fri, 10 Nov 2017 23:38:17: 7000000 INFO @ Fri, 10 Nov 2017 23:38:22: 6000000 INFO @ Fri, 10 Nov 2017 23:38:22: 7000000 INFO @ Fri, 10 Nov 2017 23:38:36: 8000000 INFO @ Fri, 10 Nov 2017 23:38:38: 8000000 INFO @ Fri, 10 Nov 2017 23:38:40: 7000000 INFO @ Fri, 10 Nov 2017 23:38:54: 9000000 INFO @ Fri, 10 Nov 2017 23:38:54: 9000000 INFO @ Fri, 10 Nov 2017 23:39:00: 8000000 INFO @ Fri, 10 Nov 2017 23:39:09: 10000000 INFO @ Fri, 10 Nov 2017 23:39:09: 10000000 INFO @ Fri, 10 Nov 2017 23:39:21: 9000000 INFO @ Fri, 10 Nov 2017 23:39:25: 11000000 INFO @ Fri, 10 Nov 2017 23:39:25: 11000000 INFO @ Fri, 10 Nov 2017 23:39:40: 10000000 INFO @ Fri, 10 Nov 2017 23:39:41: 12000000 INFO @ Fri, 10 Nov 2017 23:39:41: 12000000 INFO @ Fri, 10 Nov 2017 23:39:57: 13000000 INFO @ Fri, 10 Nov 2017 23:39:57: 13000000 INFO @ Fri, 10 Nov 2017 23:40:00: 11000000 INFO @ Fri, 10 Nov 2017 23:40:14: 14000000 INFO @ Fri, 10 Nov 2017 23:40:14: 14000000 INFO @ Fri, 10 Nov 2017 23:40:18: 12000000 INFO @ Fri, 10 Nov 2017 23:40:30: 15000000 INFO @ Fri, 10 Nov 2017 23:40:30: 15000000 INFO @ Fri, 10 Nov 2017 23:40:37: 13000000 INFO @ Fri, 10 Nov 2017 23:40:44: 16000000 INFO @ Fri, 10 Nov 2017 23:40:44: 16000000 INFO @ Fri, 10 Nov 2017 23:40:55: 14000000 INFO @ Fri, 10 Nov 2017 23:40:57: 17000000 INFO @ Fri, 10 Nov 2017 23:40:57: 17000000 INFO @ Fri, 10 Nov 2017 23:41:10: 18000000 INFO @ Fri, 10 Nov 2017 23:41:12: 18000000 INFO @ Fri, 10 Nov 2017 23:41:15: 15000000 INFO @ Fri, 10 Nov 2017 23:41:23: 19000000 INFO @ Fri, 10 Nov 2017 23:41:27: 19000000 INFO @ Fri, 10 Nov 2017 23:41:32: 16000000 INFO @ Fri, 10 Nov 2017 23:41:34: 20000000 INFO @ Fri, 10 Nov 2017 23:41:41: 20000000 INFO @ Fri, 10 Nov 2017 23:41:47: 21000000 INFO @ Fri, 10 Nov 2017 23:41:51: 17000000 INFO @ Fri, 10 Nov 2017 23:41:55: 21000000 INFO @ Fri, 10 Nov 2017 23:42:03: 22000000 INFO @ Fri, 10 Nov 2017 23:42:06: 22000000 INFO @ Fri, 10 Nov 2017 23:42:10: 18000000 INFO @ Fri, 10 Nov 2017 23:42:19: 23000000 INFO @ Fri, 10 Nov 2017 23:42:20: 23000000 INFO @ Fri, 10 Nov 2017 23:42:29: 19000000 INFO @ Fri, 10 Nov 2017 23:42:33: 24000000 INFO @ Fri, 10 Nov 2017 23:42:35: 24000000 INFO @ Fri, 10 Nov 2017 23:42:45: 25000000 INFO @ Fri, 10 Nov 2017 23:42:48: 20000000 INFO @ Fri, 10 Nov 2017 23:42:50: 25000000 INFO @ Fri, 10 Nov 2017 23:42:58: 26000000 INFO @ Fri, 10 Nov 2017 23:43:00: 26000000 INFO @ Fri, 10 Nov 2017 23:43:07: 21000000 INFO @ Fri, 10 Nov 2017 23:43:10: 27000000 INFO @ Fri, 10 Nov 2017 23:43:10: 27000000 INFO @ Fri, 10 Nov 2017 23:43:21: 28000000 INFO @ Fri, 10 Nov 2017 23:43:23: 28000000 INFO @ Fri, 10 Nov 2017 23:43:26: 22000000 INFO @ Fri, 10 Nov 2017 23:43:31: 29000000 INFO @ Fri, 10 Nov 2017 23:43:35: 29000000 INFO @ Fri, 10 Nov 2017 23:43:41: 30000000 INFO @ Fri, 10 Nov 2017 23:43:46: 23000000 INFO @ Fri, 10 Nov 2017 23:43:48: 30000000 INFO @ Fri, 10 Nov 2017 23:43:52: 31000000 INFO @ Fri, 10 Nov 2017 23:44:00: 31000000 INFO @ Fri, 10 Nov 2017 23:44:02: 32000000 INFO @ Fri, 10 Nov 2017 23:44:05: 24000000 INFO @ Fri, 10 Nov 2017 23:44:12: 32000000 INFO @ Fri, 10 Nov 2017 23:44:13: 33000000 INFO @ Fri, 10 Nov 2017 23:44:24: 34000000 INFO @ Fri, 10 Nov 2017 23:44:25: 33000000 INFO @ Fri, 10 Nov 2017 23:44:26: 25000000 INFO @ Fri, 10 Nov 2017 23:44:35: 35000000 INFO @ Fri, 10 Nov 2017 23:44:37: 34000000 INFO @ Fri, 10 Nov 2017 23:44:46: 36000000 INFO @ Fri, 10 Nov 2017 23:44:46: 26000000 INFO @ Fri, 10 Nov 2017 23:44:50: 35000000 INFO @ Fri, 10 Nov 2017 23:44:57: 37000000 INFO @ Fri, 10 Nov 2017 23:45:02: 36000000 INFO @ Fri, 10 Nov 2017 23:45:07: 27000000 INFO @ Fri, 10 Nov 2017 23:45:07: 38000000 INFO @ Fri, 10 Nov 2017 23:45:14: 37000000 INFO @ Fri, 10 Nov 2017 23:45:18: 39000000 INFO @ Fri, 10 Nov 2017 23:45:27: 28000000 INFO @ Fri, 10 Nov 2017 23:45:28: 38000000 INFO @ Fri, 10 Nov 2017 23:45:28: 40000000 INFO @ Fri, 10 Nov 2017 23:45:38: 41000000 INFO @ Fri, 10 Nov 2017 23:45:40: 39000000 INFO @ Fri, 10 Nov 2017 23:45:47: 29000000 INFO @ Fri, 10 Nov 2017 23:45:48: 42000000 INFO @ Fri, 10 Nov 2017 23:45:53: 40000000 INFO @ Fri, 10 Nov 2017 23:45:59: 43000000 INFO @ Fri, 10 Nov 2017 23:46:06: 30000000 INFO @ Fri, 10 Nov 2017 23:46:07: 41000000 INFO @ Fri, 10 Nov 2017 23:46:11: 44000000 INFO @ Fri, 10 Nov 2017 23:46:21: 42000000 INFO @ Fri, 10 Nov 2017 23:46:22: 31000000 INFO @ Fri, 10 Nov 2017 23:46:24: 45000000 INFO @ Fri, 10 Nov 2017 23:46:36: 43000000 INFO @ Fri, 10 Nov 2017 23:46:37: 46000000 INFO @ Fri, 10 Nov 2017 23:46:38: 32000000 INFO @ Fri, 10 Nov 2017 23:46:51: 47000000 INFO @ Fri, 10 Nov 2017 23:46:51: 44000000 INFO @ Fri, 10 Nov 2017 23:46:55: 33000000 INFO @ Fri, 10 Nov 2017 23:47:04: 48000000 INFO @ Fri, 10 Nov 2017 23:47:06: 45000000 INFO @ Fri, 10 Nov 2017 23:47:12: 34000000 INFO @ Fri, 10 Nov 2017 23:47:18: 49000000 INFO @ Fri, 10 Nov 2017 23:47:21: 46000000 INFO @ Fri, 10 Nov 2017 23:47:29: 35000000 INFO @ Fri, 10 Nov 2017 23:47:29: 50000000 INFO @ Fri, 10 Nov 2017 23:47:36: 47000000 INFO @ Fri, 10 Nov 2017 23:47:41: 51000000 INFO @ Fri, 10 Nov 2017 23:47:46: 36000000 INFO @ Fri, 10 Nov 2017 23:47:51: 48000000 INFO @ Fri, 10 Nov 2017 23:47:53: 52000000 INFO @ Fri, 10 Nov 2017 23:48:03: 37000000 INFO @ Fri, 10 Nov 2017 23:48:04: 53000000 INFO @ Fri, 10 Nov 2017 23:48:06: 49000000 INFO @ Fri, 10 Nov 2017 23:48:16: 54000000 INFO @ Fri, 10 Nov 2017 23:48:20: 50000000 INFO @ Fri, 10 Nov 2017 23:48:21: 38000000 INFO @ Fri, 10 Nov 2017 23:48:27: 55000000 INFO @ Fri, 10 Nov 2017 23:48:34: 51000000 INFO @ Fri, 10 Nov 2017 23:48:38: 39000000 INFO @ Fri, 10 Nov 2017 23:48:38: 56000000 INFO @ Fri, 10 Nov 2017 23:48:47: 52000000 INFO @ Fri, 10 Nov 2017 23:48:50: 57000000 INFO @ Fri, 10 Nov 2017 23:48:55: 40000000 INFO @ Fri, 10 Nov 2017 23:49:00: 53000000 INFO @ Fri, 10 Nov 2017 23:49:01: 58000000 INFO @ Fri, 10 Nov 2017 23:49:12: 41000000 INFO @ Fri, 10 Nov 2017 23:49:13: 59000000 INFO @ Fri, 10 Nov 2017 23:49:14: 54000000 INFO @ Fri, 10 Nov 2017 23:49:24: 60000000 INFO @ Fri, 10 Nov 2017 23:49:27: 55000000 INFO @ Fri, 10 Nov 2017 23:49:29: 42000000 INFO @ Fri, 10 Nov 2017 23:49:35: 61000000 INFO @ Fri, 10 Nov 2017 23:49:40: 56000000 INFO @ Fri, 10 Nov 2017 23:49:46: 62000000 INFO @ Fri, 10 Nov 2017 23:49:47: 43000000 INFO @ Fri, 10 Nov 2017 23:49:53: 57000000 INFO @ Fri, 10 Nov 2017 23:49:58: 63000000 INFO @ Fri, 10 Nov 2017 23:50:05: 44000000 INFO @ Fri, 10 Nov 2017 23:50:07: 58000000 INFO @ Fri, 10 Nov 2017 23:50:09: 64000000 INFO @ Fri, 10 Nov 2017 23:50:19: 59000000 INFO @ Fri, 10 Nov 2017 23:50:20: 65000000 INFO @ Fri, 10 Nov 2017 23:50:22: 45000000 INFO @ Fri, 10 Nov 2017 23:50:31: 66000000 INFO @ Fri, 10 Nov 2017 23:50:33: 60000000 INFO @ Fri, 10 Nov 2017 23:50:40: 46000000 INFO @ Fri, 10 Nov 2017 23:50:43: 67000000 INFO @ Fri, 10 Nov 2017 23:50:47: 61000000 INFO @ Fri, 10 Nov 2017 23:50:55: 68000000 INFO @ Fri, 10 Nov 2017 23:50:58: 47000000 INFO @ Fri, 10 Nov 2017 23:51:01: 62000000 INFO @ Fri, 10 Nov 2017 23:51:07: 69000000 INFO @ Fri, 10 Nov 2017 23:51:15: 48000000 INFO @ Fri, 10 Nov 2017 23:51:15: 63000000 INFO @ Fri, 10 Nov 2017 23:51:19: 70000000 INFO @ Fri, 10 Nov 2017 23:51:30: 64000000 INFO @ Fri, 10 Nov 2017 23:51:32: #1 tag size is determined as 40 bps INFO @ Fri, 10 Nov 2017 23:51:32: #1 tag size = 40 INFO @ Fri, 10 Nov 2017 23:51:32: #1 total tags in treatment: 70992458 INFO @ Fri, 10 Nov 2017 23:51:32: #1 user defined the maximum tags... INFO @ Fri, 10 Nov 2017 23:51:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Nov 2017 23:51:33: 49000000 INFO @ Fri, 10 Nov 2017 23:51:35: #1 tags after filtering in treatment: 70992415 INFO @ Fri, 10 Nov 2017 23:51:35: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Nov 2017 23:51:35: #1 finished! INFO @ Fri, 10 Nov 2017 23:51:35: #2 Build Peak Model... INFO @ Fri, 10 Nov 2017 23:51:35: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Nov 2017 23:51:42: 65000000 INFO @ Fri, 10 Nov 2017 23:51:43: #2 number of paired peaks: 2512 INFO @ Fri, 10 Nov 2017 23:51:43: start model_add_line... INFO @ Fri, 10 Nov 2017 23:51:44: start X-correlation... INFO @ Fri, 10 Nov 2017 23:51:44: end of X-cor INFO @ Fri, 10 Nov 2017 23:51:44: #2 finished! INFO @ Fri, 10 Nov 2017 23:51:44: #2 predicted fragment length is 39 bps INFO @ Fri, 10 Nov 2017 23:51:44: #2 alternative fragment length(s) may be 39,582 bps INFO @ Fri, 10 Nov 2017 23:51:44: #2.2 Generate R script for model : SRX1819031.20_model.r WARNING @ Fri, 10 Nov 2017 23:51:44: #2 Since the d (39) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Nov 2017 23:51:44: #2 You may need to consider one of the other alternative d(s): 39,582 WARNING @ Fri, 10 Nov 2017 23:51:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Nov 2017 23:51:44: #3 Call peaks... INFO @ Fri, 10 Nov 2017 23:51:44: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Nov 2017 23:51:51: 50000000 INFO @ Fri, 10 Nov 2017 23:51:55: 66000000 INFO @ Fri, 10 Nov 2017 23:52:07: 67000000 INFO @ Fri, 10 Nov 2017 23:52:10: 51000000 INFO @ Fri, 10 Nov 2017 23:52:20: 68000000 INFO @ Fri, 10 Nov 2017 23:52:28: 52000000 INFO @ Fri, 10 Nov 2017 23:52:33: 69000000 INFO @ Fri, 10 Nov 2017 23:52:46: 70000000 INFO @ Fri, 10 Nov 2017 23:52:47: 53000000 INFO @ Fri, 10 Nov 2017 23:52:59: #1 tag size is determined as 40 bps INFO @ Fri, 10 Nov 2017 23:52:59: #1 tag size = 40 INFO @ Fri, 10 Nov 2017 23:52:59: #1 total tags in treatment: 70992458 INFO @ Fri, 10 Nov 2017 23:52:59: #1 user defined the maximum tags... INFO @ Fri, 10 Nov 2017 23:52:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Nov 2017 23:53:02: #1 tags after filtering in treatment: 70992415 INFO @ Fri, 10 Nov 2017 23:53:02: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Nov 2017 23:53:02: #1 finished! INFO @ Fri, 10 Nov 2017 23:53:02: #2 Build Peak Model... INFO @ Fri, 10 Nov 2017 23:53:02: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Nov 2017 23:53:06: 54000000 INFO @ Fri, 10 Nov 2017 23:53:09: #2 number of paired peaks: 2512 INFO @ Fri, 10 Nov 2017 23:53:09: start model_add_line... INFO @ Fri, 10 Nov 2017 23:53:10: start X-correlation... INFO @ Fri, 10 Nov 2017 23:53:10: end of X-cor INFO @ Fri, 10 Nov 2017 23:53:10: #2 finished! INFO @ Fri, 10 Nov 2017 23:53:10: #2 predicted fragment length is 39 bps INFO @ Fri, 10 Nov 2017 23:53:10: #2 alternative fragment length(s) may be 39,582 bps INFO @ Fri, 10 Nov 2017 23:53:10: #2.2 Generate R script for model : SRX1819031.10_model.r WARNING @ Fri, 10 Nov 2017 23:53:10: #2 Since the d (39) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Nov 2017 23:53:10: #2 You may need to consider one of the other alternative d(s): 39,582 WARNING @ Fri, 10 Nov 2017 23:53:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Nov 2017 23:53:10: #3 Call peaks... INFO @ Fri, 10 Nov 2017 23:53:10: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Nov 2017 23:53:25: 55000000 INFO @ Fri, 10 Nov 2017 23:53:44: 56000000 INFO @ Fri, 10 Nov 2017 23:54:03: 57000000 INFO @ Fri, 10 Nov 2017 23:54:23: 58000000 INFO @ Fri, 10 Nov 2017 23:54:43: 59000000 INFO @ Fri, 10 Nov 2017 23:55:03: 60000000 INFO @ Fri, 10 Nov 2017 23:55:22: #3 Call peaks for each chromosome... INFO @ Fri, 10 Nov 2017 23:55:23: 61000000 INFO @ Fri, 10 Nov 2017 23:55:41: 62000000 INFO @ Fri, 10 Nov 2017 23:56:00: 63000000 INFO @ Fri, 10 Nov 2017 23:56:20: 64000000 INFO @ Fri, 10 Nov 2017 23:56:41: 65000000 INFO @ Fri, 10 Nov 2017 23:57:00: #3 Call peaks for each chromosome... INFO @ Fri, 10 Nov 2017 23:57:01: 66000000 INFO @ Fri, 10 Nov 2017 23:57:22: 67000000 INFO @ Fri, 10 Nov 2017 23:57:35: #4 Write output xls file... SRX1819031.20_peaks.xls INFO @ Fri, 10 Nov 2017 23:57:35: #4 Write peak in narrowPeak format file... SRX1819031.20_peaks.narrowPeak INFO @ Fri, 10 Nov 2017 23:57:35: #4 Write summits bed file... SRX1819031.20_summits.bed INFO @ Fri, 10 Nov 2017 23:57:35: Done! pass1 - making usageList (32 chroms): 1 millis pass2 - checking and writing primary data (621 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Fri, 10 Nov 2017 23:57:43: 68000000 INFO @ Fri, 10 Nov 2017 23:58:03: 69000000 INFO @ Fri, 10 Nov 2017 23:58:23: 70000000 INFO @ Fri, 10 Nov 2017 23:58:44: #1 tag size is determined as 40 bps INFO @ Fri, 10 Nov 2017 23:58:44: #1 tag size = 40 INFO @ Fri, 10 Nov 2017 23:58:44: #1 total tags in treatment: 70992458 INFO @ Fri, 10 Nov 2017 23:58:44: #1 user defined the maximum tags... INFO @ Fri, 10 Nov 2017 23:58:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Nov 2017 23:58:46: #1 tags after filtering in treatment: 70992415 INFO @ Fri, 10 Nov 2017 23:58:46: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Nov 2017 23:58:46: #1 finished! INFO @ Fri, 10 Nov 2017 23:58:46: #2 Build Peak Model... INFO @ Fri, 10 Nov 2017 23:58:46: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Nov 2017 23:58:54: #2 number of paired peaks: 2512 INFO @ Fri, 10 Nov 2017 23:58:54: start model_add_line... INFO @ Fri, 10 Nov 2017 23:58:55: start X-correlation... INFO @ Fri, 10 Nov 2017 23:58:55: end of X-cor INFO @ Fri, 10 Nov 2017 23:58:55: #2 finished! INFO @ Fri, 10 Nov 2017 23:58:55: #2 predicted fragment length is 39 bps INFO @ Fri, 10 Nov 2017 23:58:55: #2 alternative fragment length(s) may be 39,582 bps INFO @ Fri, 10 Nov 2017 23:58:55: #2.2 Generate R script for model : SRX1819031.05_model.r WARNING @ Fri, 10 Nov 2017 23:58:55: #2 Since the d (39) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Nov 2017 23:58:55: #2 You may need to consider one of the other alternative d(s): 39,582 WARNING @ Fri, 10 Nov 2017 23:58:55: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Nov 2017 23:58:55: #3 Call peaks... INFO @ Fri, 10 Nov 2017 23:58:55: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Nov 2017 23:59:26: #4 Write output xls file... SRX1819031.10_peaks.xls INFO @ Fri, 10 Nov 2017 23:59:26: #4 Write peak in narrowPeak format file... SRX1819031.10_peaks.narrowPeak INFO @ Fri, 10 Nov 2017 23:59:26: #4 Write summits bed file... SRX1819031.10_summits.bed INFO @ Fri, 10 Nov 2017 23:59:26: Done! pass1 - making usageList (38 chroms): 1 millis pass2 - checking and writing primary data (1315 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 00:02:31: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:04:42: #4 Write output xls file... SRX1819031.05_peaks.xls INFO @ Sat, 11 Nov 2017 00:04:42: #4 Write peak in narrowPeak format file... SRX1819031.05_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 00:04:42: #4 Write summits bed file... SRX1819031.05_summits.bed INFO @ Sat, 11 Nov 2017 00:04:42: Done! pass1 - making usageList (51 chroms): 2 millis pass2 - checking and writing primary data (2295 records, 4 fields): 11 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。