Job ID = 10194803 sra ファイルのダウンロード中... Completed: 2131976K bytes transferred in 28 seconds (608011K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 79384587 spots for /home/okishinya/chipatlas/results/rn6/SRX1819029/SRR3624105.sra Written 79384587 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:08:19 79384587 reads; of these: 79384587 (100.00%) were unpaired; of these: 4346988 (5.48%) aligned 0 times 56668723 (71.39%) aligned exactly 1 time 18368876 (23.14%) aligned >1 times 94.52% overall alignment rate Time searching: 01:08:23 Overall time: 01:08:23 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 20 files... [bam_rmdupse_core] 5792893 / 75037599 = 0.0772 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 10 Nov 2017 23:09:56: # Command line: callpeak -t SRX1819029.bam -f BAM -g 2.15e9 -n SRX1819029.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1819029.20 # format = BAM # ChIP-seq file = ['SRX1819029.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Nov 2017 23:09:56: #1 read tag files... INFO @ Fri, 10 Nov 2017 23:09:56: #1 read treatment tags... INFO @ Fri, 10 Nov 2017 23:09:56: # Command line: callpeak -t SRX1819029.bam -f BAM -g 2.15e9 -n SRX1819029.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1819029.05 # format = BAM # ChIP-seq file = ['SRX1819029.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Nov 2017 23:09:56: #1 read tag files... INFO @ Fri, 10 Nov 2017 23:09:56: #1 read treatment tags... INFO @ Fri, 10 Nov 2017 23:09:56: # Command line: callpeak -t SRX1819029.bam -f BAM -g 2.15e9 -n SRX1819029.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1819029.10 # format = BAM # ChIP-seq file = ['SRX1819029.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Nov 2017 23:09:56: #1 read tag files... INFO @ Fri, 10 Nov 2017 23:09:56: #1 read treatment tags... INFO @ Fri, 10 Nov 2017 23:10:05: 1000000 INFO @ Fri, 10 Nov 2017 23:10:06: 1000000 INFO @ Fri, 10 Nov 2017 23:10:08: 1000000 INFO @ Fri, 10 Nov 2017 23:10:16: 2000000 INFO @ Fri, 10 Nov 2017 23:10:16: 2000000 INFO @ Fri, 10 Nov 2017 23:10:18: 2000000 INFO @ Fri, 10 Nov 2017 23:10:26: 3000000 INFO @ Fri, 10 Nov 2017 23:10:27: 3000000 INFO @ Fri, 10 Nov 2017 23:10:27: 3000000 INFO @ Fri, 10 Nov 2017 23:10:36: 4000000 INFO @ Fri, 10 Nov 2017 23:10:36: 4000000 INFO @ Fri, 10 Nov 2017 23:10:37: 4000000 INFO @ Fri, 10 Nov 2017 23:10:45: 5000000 INFO @ Fri, 10 Nov 2017 23:10:46: 5000000 INFO @ Fri, 10 Nov 2017 23:10:47: 5000000 INFO @ Fri, 10 Nov 2017 23:10:55: 6000000 INFO @ Fri, 10 Nov 2017 23:10:57: 6000000 INFO @ Fri, 10 Nov 2017 23:10:59: 6000000 INFO @ Fri, 10 Nov 2017 23:11:04: 7000000 INFO @ Fri, 10 Nov 2017 23:11:07: 7000000 INFO @ Fri, 10 Nov 2017 23:11:08: 7000000 INFO @ Fri, 10 Nov 2017 23:11:14: 8000000 INFO @ Fri, 10 Nov 2017 23:11:16: 8000000 INFO @ Fri, 10 Nov 2017 23:11:17: 8000000 INFO @ Fri, 10 Nov 2017 23:11:23: 9000000 INFO @ Fri, 10 Nov 2017 23:11:26: 9000000 INFO @ Fri, 10 Nov 2017 23:11:27: 9000000 INFO @ Fri, 10 Nov 2017 23:11:33: 10000000 INFO @ Fri, 10 Nov 2017 23:11:35: 10000000 INFO @ Fri, 10 Nov 2017 23:11:36: 10000000 INFO @ Fri, 10 Nov 2017 23:11:43: 11000000 INFO @ Fri, 10 Nov 2017 23:11:45: 11000000 INFO @ Fri, 10 Nov 2017 23:11:45: 11000000 INFO @ Fri, 10 Nov 2017 23:11:53: 12000000 INFO @ Fri, 10 Nov 2017 23:11:54: 12000000 INFO @ Fri, 10 Nov 2017 23:11:54: 12000000 INFO @ Fri, 10 Nov 2017 23:12:03: 13000000 INFO @ Fri, 10 Nov 2017 23:12:03: 13000000 INFO @ Fri, 10 Nov 2017 23:12:04: 13000000 INFO @ Fri, 10 Nov 2017 23:12:12: 14000000 INFO @ Fri, 10 Nov 2017 23:12:13: 14000000 INFO @ Fri, 10 Nov 2017 23:12:14: 14000000 INFO @ Fri, 10 Nov 2017 23:12:20: 15000000 INFO @ Fri, 10 Nov 2017 23:12:22: 15000000 INFO @ Fri, 10 Nov 2017 23:12:22: 15000000 INFO @ Fri, 10 Nov 2017 23:12:27: 16000000 INFO @ Fri, 10 Nov 2017 23:12:30: 16000000 INFO @ Fri, 10 Nov 2017 23:12:31: 16000000 INFO @ Fri, 10 Nov 2017 23:12:35: 17000000 INFO @ Fri, 10 Nov 2017 23:12:38: 17000000 INFO @ Fri, 10 Nov 2017 23:12:41: 17000000 INFO @ Fri, 10 Nov 2017 23:12:42: 18000000 INFO @ Fri, 10 Nov 2017 23:12:46: 18000000 INFO @ Fri, 10 Nov 2017 23:12:50: 18000000 INFO @ Fri, 10 Nov 2017 23:12:50: 19000000 INFO @ Fri, 10 Nov 2017 23:12:54: 19000000 INFO @ Fri, 10 Nov 2017 23:12:59: 19000000 INFO @ Fri, 10 Nov 2017 23:13:00: 20000000 INFO @ Fri, 10 Nov 2017 23:13:02: 20000000 INFO @ Fri, 10 Nov 2017 23:13:08: 20000000 INFO @ Fri, 10 Nov 2017 23:13:10: 21000000 INFO @ Fri, 10 Nov 2017 23:13:11: 21000000 INFO @ Fri, 10 Nov 2017 23:13:17: 21000000 INFO @ Fri, 10 Nov 2017 23:13:18: 22000000 INFO @ Fri, 10 Nov 2017 23:13:21: 22000000 INFO @ Fri, 10 Nov 2017 23:13:26: 23000000 INFO @ Fri, 10 Nov 2017 23:13:27: 22000000 INFO @ Fri, 10 Nov 2017 23:13:32: 23000000 INFO @ Fri, 10 Nov 2017 23:13:35: 24000000 INFO @ Fri, 10 Nov 2017 23:13:37: 23000000 INFO @ Fri, 10 Nov 2017 23:13:43: 24000000 INFO @ Fri, 10 Nov 2017 23:13:46: 25000000 INFO @ Fri, 10 Nov 2017 23:13:47: 24000000 INFO @ Fri, 10 Nov 2017 23:13:57: 25000000 INFO @ Fri, 10 Nov 2017 23:13:57: 26000000 INFO @ Fri, 10 Nov 2017 23:13:58: 25000000 INFO @ Fri, 10 Nov 2017 23:14:06: 27000000 INFO @ Fri, 10 Nov 2017 23:14:08: 26000000 INFO @ Fri, 10 Nov 2017 23:14:08: 26000000 INFO @ Fri, 10 Nov 2017 23:14:15: 28000000 INFO @ Fri, 10 Nov 2017 23:14:17: 27000000 INFO @ Fri, 10 Nov 2017 23:14:21: 27000000 INFO @ Fri, 10 Nov 2017 23:14:26: 29000000 INFO @ Fri, 10 Nov 2017 23:14:27: 28000000 INFO @ Fri, 10 Nov 2017 23:14:34: 28000000 INFO @ Fri, 10 Nov 2017 23:14:37: 30000000 INFO @ Fri, 10 Nov 2017 23:14:38: 29000000 INFO @ Fri, 10 Nov 2017 23:14:48: 31000000 INFO @ Fri, 10 Nov 2017 23:14:49: 30000000 INFO @ Fri, 10 Nov 2017 23:14:49: 29000000 INFO @ Fri, 10 Nov 2017 23:14:58: 32000000 INFO @ Fri, 10 Nov 2017 23:14:59: 31000000 INFO @ Fri, 10 Nov 2017 23:15:03: 30000000 INFO @ Fri, 10 Nov 2017 23:15:07: 33000000 INFO @ Fri, 10 Nov 2017 23:15:10: 32000000 INFO @ Fri, 10 Nov 2017 23:15:16: 34000000 INFO @ Fri, 10 Nov 2017 23:15:17: 31000000 INFO @ Fri, 10 Nov 2017 23:15:19: 33000000 INFO @ Fri, 10 Nov 2017 23:15:24: 35000000 INFO @ Fri, 10 Nov 2017 23:15:28: 34000000 INFO @ Fri, 10 Nov 2017 23:15:31: 32000000 INFO @ Fri, 10 Nov 2017 23:15:34: 36000000 INFO @ Fri, 10 Nov 2017 23:15:36: 35000000 INFO @ Fri, 10 Nov 2017 23:15:42: 33000000 INFO @ Fri, 10 Nov 2017 23:15:45: 37000000 INFO @ Fri, 10 Nov 2017 23:15:47: 36000000 INFO @ Fri, 10 Nov 2017 23:15:52: 34000000 INFO @ Fri, 10 Nov 2017 23:15:55: 38000000 INFO @ Fri, 10 Nov 2017 23:15:57: 37000000 INFO @ Fri, 10 Nov 2017 23:16:02: 35000000 INFO @ Fri, 10 Nov 2017 23:16:04: 39000000 INFO @ Fri, 10 Nov 2017 23:16:08: 38000000 INFO @ Fri, 10 Nov 2017 23:16:15: 40000000 INFO @ Fri, 10 Nov 2017 23:16:16: 36000000 INFO @ Fri, 10 Nov 2017 23:16:17: 39000000 INFO @ Fri, 10 Nov 2017 23:16:25: 41000000 INFO @ Fri, 10 Nov 2017 23:16:29: 40000000 INFO @ Fri, 10 Nov 2017 23:16:30: 37000000 INFO @ Fri, 10 Nov 2017 23:16:35: 42000000 INFO @ Fri, 10 Nov 2017 23:16:39: 41000000 INFO @ Fri, 10 Nov 2017 23:16:43: 38000000 INFO @ Fri, 10 Nov 2017 23:16:44: 43000000 INFO @ Fri, 10 Nov 2017 23:16:50: 42000000 INFO @ Fri, 10 Nov 2017 23:16:52: 44000000 INFO @ Fri, 10 Nov 2017 23:16:54: 39000000 INFO @ Fri, 10 Nov 2017 23:16:58: 43000000 INFO @ Fri, 10 Nov 2017 23:17:00: 45000000 INFO @ Fri, 10 Nov 2017 23:17:07: 44000000 INFO @ Fri, 10 Nov 2017 23:17:08: 40000000 INFO @ Fri, 10 Nov 2017 23:17:11: 46000000 INFO @ Fri, 10 Nov 2017 23:17:16: 45000000 INFO @ Fri, 10 Nov 2017 23:17:21: 41000000 INFO @ Fri, 10 Nov 2017 23:17:22: 47000000 INFO @ Fri, 10 Nov 2017 23:17:28: 46000000 INFO @ Fri, 10 Nov 2017 23:17:33: 48000000 INFO @ Fri, 10 Nov 2017 23:17:34: 42000000 INFO @ Fri, 10 Nov 2017 23:17:39: 47000000 INFO @ Fri, 10 Nov 2017 23:17:45: 49000000 INFO @ Fri, 10 Nov 2017 23:17:45: 43000000 INFO @ Fri, 10 Nov 2017 23:17:51: 48000000 INFO @ Fri, 10 Nov 2017 23:17:56: 50000000 INFO @ Fri, 10 Nov 2017 23:17:56: 44000000 INFO @ Fri, 10 Nov 2017 23:18:02: 49000000 INFO @ Fri, 10 Nov 2017 23:18:07: 51000000 INFO @ Fri, 10 Nov 2017 23:18:07: 45000000 INFO @ Fri, 10 Nov 2017 23:18:14: 50000000 INFO @ Fri, 10 Nov 2017 23:18:18: 52000000 INFO @ Fri, 10 Nov 2017 23:18:21: 46000000 INFO @ Fri, 10 Nov 2017 23:18:25: 51000000 INFO @ Fri, 10 Nov 2017 23:18:30: 53000000 INFO @ Fri, 10 Nov 2017 23:18:35: 47000000 INFO @ Fri, 10 Nov 2017 23:18:37: 52000000 INFO @ Fri, 10 Nov 2017 23:18:39: 54000000 INFO @ Fri, 10 Nov 2017 23:18:49: 53000000 INFO @ Fri, 10 Nov 2017 23:18:50: 48000000 INFO @ Fri, 10 Nov 2017 23:18:50: 55000000 INFO @ Fri, 10 Nov 2017 23:18:58: 54000000 INFO @ Fri, 10 Nov 2017 23:19:01: 56000000 INFO @ Fri, 10 Nov 2017 23:19:03: 49000000 INFO @ Fri, 10 Nov 2017 23:19:08: 55000000 INFO @ Fri, 10 Nov 2017 23:19:13: 57000000 INFO @ Fri, 10 Nov 2017 23:19:17: 50000000 INFO @ Fri, 10 Nov 2017 23:19:20: 56000000 INFO @ Fri, 10 Nov 2017 23:19:25: 58000000 INFO @ Fri, 10 Nov 2017 23:19:32: 51000000 INFO @ Fri, 10 Nov 2017 23:19:32: 57000000 INFO @ Fri, 10 Nov 2017 23:19:36: 59000000 INFO @ Fri, 10 Nov 2017 23:19:43: 58000000 INFO @ Fri, 10 Nov 2017 23:19:45: 52000000 INFO @ Fri, 10 Nov 2017 23:19:48: 60000000 INFO @ Fri, 10 Nov 2017 23:19:53: 53000000 INFO @ Fri, 10 Nov 2017 23:19:55: 59000000 INFO @ Fri, 10 Nov 2017 23:19:59: 61000000 INFO @ Fri, 10 Nov 2017 23:20:03: 54000000 INFO @ Fri, 10 Nov 2017 23:20:07: 60000000 INFO @ Fri, 10 Nov 2017 23:20:11: 62000000 INFO @ Fri, 10 Nov 2017 23:20:13: 55000000 INFO @ Fri, 10 Nov 2017 23:20:19: 61000000 INFO @ Fri, 10 Nov 2017 23:20:21: 56000000 INFO @ Fri, 10 Nov 2017 23:20:22: 63000000 INFO @ Fri, 10 Nov 2017 23:20:30: 57000000 INFO @ Fri, 10 Nov 2017 23:20:32: 62000000 INFO @ Fri, 10 Nov 2017 23:20:33: 64000000 INFO @ Fri, 10 Nov 2017 23:20:39: 58000000 INFO @ Fri, 10 Nov 2017 23:20:43: 65000000 INFO @ Fri, 10 Nov 2017 23:20:43: 63000000 INFO @ Fri, 10 Nov 2017 23:20:48: 59000000 INFO @ Fri, 10 Nov 2017 23:20:51: 66000000 INFO @ Fri, 10 Nov 2017 23:20:55: 64000000 INFO @ Fri, 10 Nov 2017 23:20:57: 60000000 INFO @ Fri, 10 Nov 2017 23:21:00: 67000000 INFO @ Fri, 10 Nov 2017 23:21:03: 65000000 INFO @ Fri, 10 Nov 2017 23:21:05: 61000000 INFO @ Fri, 10 Nov 2017 23:21:09: 68000000 INFO @ Fri, 10 Nov 2017 23:21:12: 66000000 INFO @ Fri, 10 Nov 2017 23:21:14: 62000000 INFO @ Fri, 10 Nov 2017 23:21:17: 69000000 INFO @ Fri, 10 Nov 2017 23:21:21: #1 tag size is determined as 40 bps INFO @ Fri, 10 Nov 2017 23:21:21: #1 tag size = 40 INFO @ Fri, 10 Nov 2017 23:21:21: #1 total tags in treatment: 69244706 INFO @ Fri, 10 Nov 2017 23:21:21: #1 user defined the maximum tags... INFO @ Fri, 10 Nov 2017 23:21:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Nov 2017 23:21:21: 67000000 INFO @ Fri, 10 Nov 2017 23:21:23: #1 tags after filtering in treatment: 69244655 INFO @ Fri, 10 Nov 2017 23:21:23: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Nov 2017 23:21:23: #1 finished! INFO @ Fri, 10 Nov 2017 23:21:23: #2 Build Peak Model... INFO @ Fri, 10 Nov 2017 23:21:23: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Nov 2017 23:21:23: 63000000 INFO @ Fri, 10 Nov 2017 23:21:29: #2 number of paired peaks: 2464 INFO @ Fri, 10 Nov 2017 23:21:29: start model_add_line... INFO @ Fri, 10 Nov 2017 23:21:30: start X-correlation... INFO @ Fri, 10 Nov 2017 23:21:30: end of X-cor INFO @ Fri, 10 Nov 2017 23:21:30: #2 finished! INFO @ Fri, 10 Nov 2017 23:21:30: #2 predicted fragment length is 39 bps INFO @ Fri, 10 Nov 2017 23:21:30: #2 alternative fragment length(s) may be 39 bps INFO @ Fri, 10 Nov 2017 23:21:30: #2.2 Generate R script for model : SRX1819029.05_model.r WARNING @ Fri, 10 Nov 2017 23:21:30: #2 Since the d (39) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Nov 2017 23:21:30: #2 You may need to consider one of the other alternative d(s): 39 WARNING @ Fri, 10 Nov 2017 23:21:30: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Nov 2017 23:21:30: #3 Call peaks... INFO @ Fri, 10 Nov 2017 23:21:30: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Nov 2017 23:21:31: 68000000 INFO @ Fri, 10 Nov 2017 23:21:31: 64000000 INFO @ Fri, 10 Nov 2017 23:21:41: 69000000 INFO @ Fri, 10 Nov 2017 23:21:42: 65000000 INFO @ Fri, 10 Nov 2017 23:21:44: #1 tag size is determined as 40 bps INFO @ Fri, 10 Nov 2017 23:21:44: #1 tag size = 40 INFO @ Fri, 10 Nov 2017 23:21:44: #1 total tags in treatment: 69244706 INFO @ Fri, 10 Nov 2017 23:21:44: #1 user defined the maximum tags... INFO @ Fri, 10 Nov 2017 23:21:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Nov 2017 23:21:46: #1 tags after filtering in treatment: 69244655 INFO @ Fri, 10 Nov 2017 23:21:46: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Nov 2017 23:21:46: #1 finished! INFO @ Fri, 10 Nov 2017 23:21:46: #2 Build Peak Model... INFO @ Fri, 10 Nov 2017 23:21:46: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Nov 2017 23:21:52: 66000000 INFO @ Fri, 10 Nov 2017 23:21:53: #2 number of paired peaks: 2464 INFO @ Fri, 10 Nov 2017 23:21:53: start model_add_line... INFO @ Fri, 10 Nov 2017 23:21:54: start X-correlation... INFO @ Fri, 10 Nov 2017 23:21:54: end of X-cor INFO @ Fri, 10 Nov 2017 23:21:54: #2 finished! INFO @ Fri, 10 Nov 2017 23:21:54: #2 predicted fragment length is 39 bps INFO @ Fri, 10 Nov 2017 23:21:54: #2 alternative fragment length(s) may be 39 bps INFO @ Fri, 10 Nov 2017 23:21:54: #2.2 Generate R script for model : SRX1819029.20_model.r WARNING @ Fri, 10 Nov 2017 23:21:54: #2 Since the d (39) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Nov 2017 23:21:54: #2 You may need to consider one of the other alternative d(s): 39 WARNING @ Fri, 10 Nov 2017 23:21:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Nov 2017 23:21:54: #3 Call peaks... INFO @ Fri, 10 Nov 2017 23:21:54: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Nov 2017 23:22:02: 67000000 INFO @ Fri, 10 Nov 2017 23:22:14: 68000000 INFO @ Fri, 10 Nov 2017 23:22:28: 69000000 INFO @ Fri, 10 Nov 2017 23:22:32: #1 tag size is determined as 40 bps INFO @ Fri, 10 Nov 2017 23:22:32: #1 tag size = 40 INFO @ Fri, 10 Nov 2017 23:22:32: #1 total tags in treatment: 69244706 INFO @ Fri, 10 Nov 2017 23:22:32: #1 user defined the maximum tags... INFO @ Fri, 10 Nov 2017 23:22:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Nov 2017 23:22:35: #1 tags after filtering in treatment: 69244655 INFO @ Fri, 10 Nov 2017 23:22:35: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Nov 2017 23:22:35: #1 finished! INFO @ Fri, 10 Nov 2017 23:22:35: #2 Build Peak Model... INFO @ Fri, 10 Nov 2017 23:22:35: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Nov 2017 23:22:41: #2 number of paired peaks: 2464 INFO @ Fri, 10 Nov 2017 23:22:41: start model_add_line... INFO @ Fri, 10 Nov 2017 23:22:42: start X-correlation... INFO @ Fri, 10 Nov 2017 23:22:42: end of X-cor INFO @ Fri, 10 Nov 2017 23:22:42: #2 finished! INFO @ Fri, 10 Nov 2017 23:22:42: #2 predicted fragment length is 39 bps INFO @ Fri, 10 Nov 2017 23:22:42: #2 alternative fragment length(s) may be 39 bps INFO @ Fri, 10 Nov 2017 23:22:42: #2.2 Generate R script for model : SRX1819029.10_model.r WARNING @ Fri, 10 Nov 2017 23:22:42: #2 Since the d (39) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Nov 2017 23:22:42: #2 You may need to consider one of the other alternative d(s): 39 WARNING @ Fri, 10 Nov 2017 23:22:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Nov 2017 23:22:42: #3 Call peaks... INFO @ Fri, 10 Nov 2017 23:22:42: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Nov 2017 23:24:44: #3 Call peaks for each chromosome... INFO @ Fri, 10 Nov 2017 23:25:02: #3 Call peaks for each chromosome... INFO @ Fri, 10 Nov 2017 23:25:58: #3 Call peaks for each chromosome... INFO @ Fri, 10 Nov 2017 23:26:52: #4 Write output xls file... SRX1819029.05_peaks.xls INFO @ Fri, 10 Nov 2017 23:26:52: #4 Write peak in narrowPeak format file... SRX1819029.05_peaks.narrowPeak INFO @ Fri, 10 Nov 2017 23:26:52: #4 Write summits bed file... SRX1819029.05_summits.bed INFO @ Fri, 10 Nov 2017 23:26:52: Done! pass1 - making usageList (46 chroms): 1 millis pass2 - checking and writing primary data (2218 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Fri, 10 Nov 2017 23:27:02: #4 Write output xls file... SRX1819029.20_peaks.xls INFO @ Fri, 10 Nov 2017 23:27:02: #4 Write peak in narrowPeak format file... SRX1819029.20_peaks.narrowPeak INFO @ Fri, 10 Nov 2017 23:27:02: #4 Write summits bed file... SRX1819029.20_summits.bed INFO @ Fri, 10 Nov 2017 23:27:02: Done! pass1 - making usageList (32 chroms): 1 millis pass2 - checking and writing primary data (566 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Fri, 10 Nov 2017 23:28:05: #4 Write output xls file... SRX1819029.10_peaks.xls INFO @ Fri, 10 Nov 2017 23:28:05: #4 Write peak in narrowPeak format file... SRX1819029.10_peaks.narrowPeak INFO @ Fri, 10 Nov 2017 23:28:05: #4 Write summits bed file... SRX1819029.10_summits.bed INFO @ Fri, 10 Nov 2017 23:28:05: Done! pass1 - making usageList (40 chroms): 1 millis pass2 - checking and writing primary data (1274 records, 4 fields): 7 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。