Job ID = 10194737 sra ファイルのダウンロード中... Completed: 2176178K bytes transferred in 15 seconds (1154448K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 105436266 spots for /home/okishinya/chipatlas/results/rn6/SRX1068225/SRR2073185.sra Written 105436266 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:19:56 105436266 reads; of these: 105436266 (100.00%) were unpaired; of these: 2271936 (2.15%) aligned 0 times 74286680 (70.46%) aligned exactly 1 time 28877650 (27.39%) aligned >1 times 97.85% overall alignment rate Time searching: 01:19:58 Overall time: 01:19:58 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 44 files... [bam_rmdupse_core] 11838087 / 103164330 = 0.1147 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 11 Nov 2017 00:44:55: # Command line: callpeak -t SRX1068225.bam -f BAM -g 2.15e9 -n SRX1068225.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1068225.20 # format = BAM # ChIP-seq file = ['SRX1068225.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:44:55: # Command line: callpeak -t SRX1068225.bam -f BAM -g 2.15e9 -n SRX1068225.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1068225.05 # format = BAM # ChIP-seq file = ['SRX1068225.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:44:55: # Command line: callpeak -t SRX1068225.bam -f BAM -g 2.15e9 -n SRX1068225.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1068225.10 # format = BAM # ChIP-seq file = ['SRX1068225.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:44:55: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:44:55: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:44:55: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:44:55: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:44:55: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:44:55: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:45:02: 1000000 INFO @ Sat, 11 Nov 2017 00:45:02: 1000000 INFO @ Sat, 11 Nov 2017 00:45:02: 1000000 INFO @ Sat, 11 Nov 2017 00:45:08: 2000000 INFO @ Sat, 11 Nov 2017 00:45:08: 2000000 INFO @ Sat, 11 Nov 2017 00:45:08: 2000000 INFO @ Sat, 11 Nov 2017 00:45:14: 3000000 INFO @ Sat, 11 Nov 2017 00:45:15: 3000000 INFO @ Sat, 11 Nov 2017 00:45:15: 3000000 INFO @ Sat, 11 Nov 2017 00:45:21: 4000000 INFO @ Sat, 11 Nov 2017 00:45:21: 4000000 INFO @ Sat, 11 Nov 2017 00:45:21: 4000000 INFO @ Sat, 11 Nov 2017 00:45:27: 5000000 INFO @ Sat, 11 Nov 2017 00:45:28: 5000000 INFO @ Sat, 11 Nov 2017 00:45:28: 5000000 INFO @ Sat, 11 Nov 2017 00:45:33: 6000000 INFO @ Sat, 11 Nov 2017 00:45:34: 6000000 INFO @ Sat, 11 Nov 2017 00:45:34: 6000000 INFO @ Sat, 11 Nov 2017 00:45:40: 7000000 INFO @ Sat, 11 Nov 2017 00:45:40: 7000000 INFO @ Sat, 11 Nov 2017 00:45:41: 7000000 INFO @ Sat, 11 Nov 2017 00:45:46: 8000000 INFO @ Sat, 11 Nov 2017 00:45:47: 8000000 INFO @ Sat, 11 Nov 2017 00:45:47: 8000000 INFO @ Sat, 11 Nov 2017 00:45:53: 9000000 INFO @ Sat, 11 Nov 2017 00:45:53: 9000000 INFO @ Sat, 11 Nov 2017 00:45:54: 9000000 INFO @ Sat, 11 Nov 2017 00:45:59: 10000000 INFO @ Sat, 11 Nov 2017 00:45:59: 10000000 INFO @ Sat, 11 Nov 2017 00:46:00: 10000000 INFO @ Sat, 11 Nov 2017 00:46:06: 11000000 INFO @ Sat, 11 Nov 2017 00:46:06: 11000000 INFO @ Sat, 11 Nov 2017 00:46:07: 11000000 INFO @ Sat, 11 Nov 2017 00:46:12: 12000000 INFO @ Sat, 11 Nov 2017 00:46:12: 12000000 INFO @ Sat, 11 Nov 2017 00:46:13: 12000000 INFO @ Sat, 11 Nov 2017 00:46:18: 13000000 INFO @ Sat, 11 Nov 2017 00:46:19: 13000000 INFO @ Sat, 11 Nov 2017 00:46:20: 13000000 INFO @ Sat, 11 Nov 2017 00:46:25: 14000000 INFO @ Sat, 11 Nov 2017 00:46:25: 14000000 INFO @ Sat, 11 Nov 2017 00:46:27: 14000000 INFO @ Sat, 11 Nov 2017 00:46:31: 15000000 INFO @ Sat, 11 Nov 2017 00:46:31: 15000000 INFO @ Sat, 11 Nov 2017 00:46:33: 15000000 INFO @ Sat, 11 Nov 2017 00:46:38: 16000000 INFO @ Sat, 11 Nov 2017 00:46:38: 16000000 INFO @ Sat, 11 Nov 2017 00:46:40: 16000000 INFO @ Sat, 11 Nov 2017 00:46:44: 17000000 INFO @ Sat, 11 Nov 2017 00:46:44: 17000000 INFO @ Sat, 11 Nov 2017 00:46:46: 17000000 INFO @ Sat, 11 Nov 2017 00:46:51: 18000000 INFO @ Sat, 11 Nov 2017 00:46:51: 18000000 INFO @ Sat, 11 Nov 2017 00:46:53: 18000000 INFO @ Sat, 11 Nov 2017 00:46:57: 19000000 INFO @ Sat, 11 Nov 2017 00:46:57: 19000000 INFO @ Sat, 11 Nov 2017 00:46:59: 19000000 INFO @ Sat, 11 Nov 2017 00:47:03: 20000000 INFO @ Sat, 11 Nov 2017 00:47:03: 20000000 INFO @ Sat, 11 Nov 2017 00:47:06: 20000000 INFO @ Sat, 11 Nov 2017 00:47:09: 21000000 INFO @ Sat, 11 Nov 2017 00:47:10: 21000000 INFO @ Sat, 11 Nov 2017 00:47:12: 21000000 INFO @ Sat, 11 Nov 2017 00:47:16: 22000000 INFO @ Sat, 11 Nov 2017 00:47:16: 22000000 INFO @ Sat, 11 Nov 2017 00:47:19: 22000000 INFO @ Sat, 11 Nov 2017 00:47:22: 23000000 INFO @ Sat, 11 Nov 2017 00:47:23: 23000000 INFO @ Sat, 11 Nov 2017 00:47:26: 23000000 INFO @ Sat, 11 Nov 2017 00:47:28: 24000000 INFO @ Sat, 11 Nov 2017 00:47:29: 24000000 INFO @ Sat, 11 Nov 2017 00:47:32: 24000000 INFO @ Sat, 11 Nov 2017 00:47:35: 25000000 INFO @ Sat, 11 Nov 2017 00:47:36: 25000000 INFO @ Sat, 11 Nov 2017 00:47:39: 25000000 INFO @ Sat, 11 Nov 2017 00:47:41: 26000000 INFO @ Sat, 11 Nov 2017 00:47:42: 26000000 INFO @ Sat, 11 Nov 2017 00:47:45: 26000000 INFO @ Sat, 11 Nov 2017 00:47:48: 27000000 INFO @ Sat, 11 Nov 2017 00:47:48: 27000000 INFO @ Sat, 11 Nov 2017 00:47:51: 27000000 INFO @ Sat, 11 Nov 2017 00:47:54: 28000000 INFO @ Sat, 11 Nov 2017 00:47:54: 28000000 INFO @ Sat, 11 Nov 2017 00:47:58: 28000000 INFO @ Sat, 11 Nov 2017 00:48:00: 29000000 INFO @ Sat, 11 Nov 2017 00:48:01: 29000000 INFO @ Sat, 11 Nov 2017 00:48:04: 29000000 INFO @ Sat, 11 Nov 2017 00:48:07: 30000000 INFO @ Sat, 11 Nov 2017 00:48:07: 30000000 INFO @ Sat, 11 Nov 2017 00:48:11: 30000000 INFO @ Sat, 11 Nov 2017 00:48:13: 31000000 INFO @ Sat, 11 Nov 2017 00:48:13: 31000000 INFO @ Sat, 11 Nov 2017 00:48:17: 31000000 INFO @ Sat, 11 Nov 2017 00:48:19: 32000000 INFO @ Sat, 11 Nov 2017 00:48:19: 32000000 INFO @ Sat, 11 Nov 2017 00:48:23: 32000000 INFO @ Sat, 11 Nov 2017 00:48:26: 33000000 INFO @ Sat, 11 Nov 2017 00:48:26: 33000000 INFO @ Sat, 11 Nov 2017 00:48:30: 33000000 INFO @ Sat, 11 Nov 2017 00:48:32: 34000000 INFO @ Sat, 11 Nov 2017 00:48:32: 34000000 INFO @ Sat, 11 Nov 2017 00:48:36: 34000000 INFO @ Sat, 11 Nov 2017 00:48:38: 35000000 INFO @ Sat, 11 Nov 2017 00:48:38: 35000000 INFO @ Sat, 11 Nov 2017 00:48:43: 35000000 INFO @ Sat, 11 Nov 2017 00:48:45: 36000000 INFO @ Sat, 11 Nov 2017 00:48:45: 36000000 INFO @ Sat, 11 Nov 2017 00:48:49: 36000000 INFO @ Sat, 11 Nov 2017 00:48:51: 37000000 INFO @ Sat, 11 Nov 2017 00:48:51: 37000000 INFO @ Sat, 11 Nov 2017 00:48:56: 37000000 INFO @ Sat, 11 Nov 2017 00:48:57: 38000000 INFO @ Sat, 11 Nov 2017 00:48:57: 38000000 INFO @ Sat, 11 Nov 2017 00:49:02: 38000000 INFO @ Sat, 11 Nov 2017 00:49:03: 39000000 INFO @ Sat, 11 Nov 2017 00:49:04: 39000000 INFO @ Sat, 11 Nov 2017 00:49:08: 39000000 INFO @ Sat, 11 Nov 2017 00:49:10: 40000000 INFO @ Sat, 11 Nov 2017 00:49:10: 40000000 INFO @ Sat, 11 Nov 2017 00:49:15: 40000000 INFO @ Sat, 11 Nov 2017 00:49:16: 41000000 INFO @ Sat, 11 Nov 2017 00:49:16: 41000000 INFO @ Sat, 11 Nov 2017 00:49:21: 41000000 INFO @ Sat, 11 Nov 2017 00:49:22: 42000000 INFO @ Sat, 11 Nov 2017 00:49:23: 42000000 INFO @ Sat, 11 Nov 2017 00:49:28: 42000000 INFO @ Sat, 11 Nov 2017 00:49:28: 43000000 INFO @ Sat, 11 Nov 2017 00:49:29: 43000000 INFO @ Sat, 11 Nov 2017 00:49:34: 43000000 INFO @ Sat, 11 Nov 2017 00:49:35: 44000000 INFO @ Sat, 11 Nov 2017 00:49:35: 44000000 INFO @ Sat, 11 Nov 2017 00:49:41: 44000000 INFO @ Sat, 11 Nov 2017 00:49:41: 45000000 INFO @ Sat, 11 Nov 2017 00:49:42: 45000000 INFO @ Sat, 11 Nov 2017 00:49:47: 45000000 INFO @ Sat, 11 Nov 2017 00:49:47: 46000000 INFO @ Sat, 11 Nov 2017 00:49:48: 46000000 INFO @ Sat, 11 Nov 2017 00:49:53: 47000000 INFO @ Sat, 11 Nov 2017 00:49:53: 46000000 INFO @ Sat, 11 Nov 2017 00:49:55: 47000000 INFO @ Sat, 11 Nov 2017 00:49:59: 48000000 INFO @ Sat, 11 Nov 2017 00:50:00: 47000000 INFO @ Sat, 11 Nov 2017 00:50:01: 48000000 INFO @ Sat, 11 Nov 2017 00:50:06: 49000000 INFO @ Sat, 11 Nov 2017 00:50:06: 48000000 INFO @ Sat, 11 Nov 2017 00:50:07: 49000000 INFO @ Sat, 11 Nov 2017 00:50:12: 50000000 INFO @ Sat, 11 Nov 2017 00:50:13: 49000000 INFO @ Sat, 11 Nov 2017 00:50:14: 50000000 INFO @ Sat, 11 Nov 2017 00:50:18: 51000000 INFO @ Sat, 11 Nov 2017 00:50:19: 50000000 INFO @ Sat, 11 Nov 2017 00:50:20: 51000000 INFO @ Sat, 11 Nov 2017 00:50:24: 52000000 INFO @ Sat, 11 Nov 2017 00:50:26: 51000000 INFO @ Sat, 11 Nov 2017 00:50:27: 52000000 INFO @ Sat, 11 Nov 2017 00:50:31: 53000000 INFO @ Sat, 11 Nov 2017 00:50:32: 52000000 INFO @ Sat, 11 Nov 2017 00:50:33: 53000000 INFO @ Sat, 11 Nov 2017 00:50:37: 54000000 INFO @ Sat, 11 Nov 2017 00:50:38: 53000000 INFO @ Sat, 11 Nov 2017 00:50:39: 54000000 INFO @ Sat, 11 Nov 2017 00:50:43: 55000000 INFO @ Sat, 11 Nov 2017 00:50:45: 54000000 INFO @ Sat, 11 Nov 2017 00:50:45: 55000000 INFO @ Sat, 11 Nov 2017 00:50:49: 56000000 INFO @ Sat, 11 Nov 2017 00:50:51: 55000000 INFO @ Sat, 11 Nov 2017 00:50:52: 56000000 INFO @ Sat, 11 Nov 2017 00:50:55: 57000000 INFO @ Sat, 11 Nov 2017 00:50:58: 56000000 INFO @ Sat, 11 Nov 2017 00:50:58: 57000000 INFO @ Sat, 11 Nov 2017 00:51:02: 58000000 INFO @ Sat, 11 Nov 2017 00:51:04: 57000000 INFO @ Sat, 11 Nov 2017 00:51:04: 58000000 INFO @ Sat, 11 Nov 2017 00:51:08: 59000000 INFO @ Sat, 11 Nov 2017 00:51:10: 58000000 INFO @ Sat, 11 Nov 2017 00:51:11: 59000000 INFO @ Sat, 11 Nov 2017 00:51:14: 60000000 INFO @ Sat, 11 Nov 2017 00:51:17: 59000000 INFO @ Sat, 11 Nov 2017 00:51:17: 60000000 INFO @ Sat, 11 Nov 2017 00:51:20: 61000000 INFO @ Sat, 11 Nov 2017 00:51:23: 60000000 INFO @ Sat, 11 Nov 2017 00:51:23: 61000000 INFO @ Sat, 11 Nov 2017 00:51:26: 62000000 INFO @ Sat, 11 Nov 2017 00:51:29: 61000000 INFO @ Sat, 11 Nov 2017 00:51:30: 62000000 INFO @ Sat, 11 Nov 2017 00:51:33: 63000000 INFO @ Sat, 11 Nov 2017 00:51:36: 62000000 INFO @ Sat, 11 Nov 2017 00:51:36: 63000000 INFO @ Sat, 11 Nov 2017 00:51:39: 64000000 INFO @ Sat, 11 Nov 2017 00:51:42: 63000000 INFO @ Sat, 11 Nov 2017 00:51:43: 64000000 INFO @ Sat, 11 Nov 2017 00:51:45: 65000000 INFO @ Sat, 11 Nov 2017 00:51:49: 64000000 INFO @ Sat, 11 Nov 2017 00:51:49: 65000000 INFO @ Sat, 11 Nov 2017 00:51:51: 66000000 INFO @ Sat, 11 Nov 2017 00:51:55: 65000000 INFO @ Sat, 11 Nov 2017 00:51:55: 66000000 INFO @ Sat, 11 Nov 2017 00:51:58: 67000000 INFO @ Sat, 11 Nov 2017 00:52:02: 66000000 INFO @ Sat, 11 Nov 2017 00:52:02: 67000000 INFO @ Sat, 11 Nov 2017 00:52:04: 68000000 INFO @ Sat, 11 Nov 2017 00:52:08: 67000000 INFO @ Sat, 11 Nov 2017 00:52:08: 68000000 INFO @ Sat, 11 Nov 2017 00:52:10: 69000000 INFO @ Sat, 11 Nov 2017 00:52:14: 68000000 INFO @ Sat, 11 Nov 2017 00:52:15: 69000000 INFO @ Sat, 11 Nov 2017 00:52:16: 70000000 INFO @ Sat, 11 Nov 2017 00:52:21: 70000000 INFO @ Sat, 11 Nov 2017 00:52:21: 69000000 INFO @ Sat, 11 Nov 2017 00:52:23: 71000000 INFO @ Sat, 11 Nov 2017 00:52:27: 71000000 INFO @ Sat, 11 Nov 2017 00:52:27: 70000000 INFO @ Sat, 11 Nov 2017 00:52:29: 72000000 INFO @ Sat, 11 Nov 2017 00:52:34: 72000000 INFO @ Sat, 11 Nov 2017 00:52:34: 71000000 INFO @ Sat, 11 Nov 2017 00:52:35: 73000000 INFO @ Sat, 11 Nov 2017 00:52:40: 73000000 INFO @ Sat, 11 Nov 2017 00:52:40: 72000000 INFO @ Sat, 11 Nov 2017 00:52:42: 74000000 INFO @ Sat, 11 Nov 2017 00:52:46: 74000000 INFO @ Sat, 11 Nov 2017 00:52:47: 73000000 INFO @ Sat, 11 Nov 2017 00:52:48: 75000000 INFO @ Sat, 11 Nov 2017 00:52:53: 75000000 INFO @ Sat, 11 Nov 2017 00:52:53: 74000000 INFO @ Sat, 11 Nov 2017 00:52:54: 76000000 INFO @ Sat, 11 Nov 2017 00:52:59: 76000000 INFO @ Sat, 11 Nov 2017 00:52:59: 75000000 INFO @ Sat, 11 Nov 2017 00:53:00: 77000000 INFO @ Sat, 11 Nov 2017 00:53:05: 77000000 INFO @ Sat, 11 Nov 2017 00:53:06: 76000000 INFO @ Sat, 11 Nov 2017 00:53:07: 78000000 INFO @ Sat, 11 Nov 2017 00:53:12: 78000000 INFO @ Sat, 11 Nov 2017 00:53:12: 77000000 INFO @ Sat, 11 Nov 2017 00:53:13: 79000000 INFO @ Sat, 11 Nov 2017 00:53:18: 79000000 INFO @ Sat, 11 Nov 2017 00:53:19: 78000000 INFO @ Sat, 11 Nov 2017 00:53:19: 80000000 INFO @ Sat, 11 Nov 2017 00:53:25: 80000000 INFO @ Sat, 11 Nov 2017 00:53:25: 79000000 INFO @ Sat, 11 Nov 2017 00:53:26: 81000000 INFO @ Sat, 11 Nov 2017 00:53:31: 81000000 INFO @ Sat, 11 Nov 2017 00:53:32: 80000000 INFO @ Sat, 11 Nov 2017 00:53:32: 82000000 INFO @ Sat, 11 Nov 2017 00:53:38: 82000000 INFO @ Sat, 11 Nov 2017 00:53:38: 81000000 INFO @ Sat, 11 Nov 2017 00:53:38: 83000000 INFO @ Sat, 11 Nov 2017 00:53:44: 83000000 INFO @ Sat, 11 Nov 2017 00:53:45: 82000000 INFO @ Sat, 11 Nov 2017 00:53:45: 84000000 INFO @ Sat, 11 Nov 2017 00:53:50: 84000000 INFO @ Sat, 11 Nov 2017 00:53:51: 85000000 INFO @ Sat, 11 Nov 2017 00:53:51: 83000000 INFO @ Sat, 11 Nov 2017 00:53:57: 85000000 INFO @ Sat, 11 Nov 2017 00:53:57: 86000000 INFO @ Sat, 11 Nov 2017 00:53:57: 84000000 INFO @ Sat, 11 Nov 2017 00:54:03: 86000000 INFO @ Sat, 11 Nov 2017 00:54:04: 87000000 INFO @ Sat, 11 Nov 2017 00:54:04: 85000000 INFO @ Sat, 11 Nov 2017 00:54:09: 87000000 INFO @ Sat, 11 Nov 2017 00:54:10: 88000000 INFO @ Sat, 11 Nov 2017 00:54:10: 86000000 INFO @ Sat, 11 Nov 2017 00:54:16: 88000000 INFO @ Sat, 11 Nov 2017 00:54:16: 89000000 INFO @ Sat, 11 Nov 2017 00:54:17: 87000000 INFO @ Sat, 11 Nov 2017 00:54:22: 89000000 INFO @ Sat, 11 Nov 2017 00:54:23: 90000000 INFO @ Sat, 11 Nov 2017 00:54:23: 88000000 INFO @ Sat, 11 Nov 2017 00:54:29: 90000000 INFO @ Sat, 11 Nov 2017 00:54:29: 91000000 INFO @ Sat, 11 Nov 2017 00:54:30: 89000000 INFO @ Sat, 11 Nov 2017 00:54:32: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:54:32: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:54:32: #1 total tags in treatment: 91326243 INFO @ Sat, 11 Nov 2017 00:54:32: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:54:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:54:34: #1 tags after filtering in treatment: 91326229 INFO @ Sat, 11 Nov 2017 00:54:34: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:54:34: #1 finished! INFO @ Sat, 11 Nov 2017 00:54:34: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:54:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:54:35: 91000000 INFO @ Sat, 11 Nov 2017 00:54:36: 90000000 INFO @ Sat, 11 Nov 2017 00:54:38: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:54:38: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:54:38: #1 total tags in treatment: 91326243 INFO @ Sat, 11 Nov 2017 00:54:38: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:54:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:54:40: #1 tags after filtering in treatment: 91326229 INFO @ Sat, 11 Nov 2017 00:54:40: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:54:40: #1 finished! INFO @ Sat, 11 Nov 2017 00:54:40: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:54:40: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:54:42: #2 number of paired peaks: 7241 INFO @ Sat, 11 Nov 2017 00:54:42: start model_add_line... INFO @ Sat, 11 Nov 2017 00:54:42: 91000000 INFO @ Sat, 11 Nov 2017 00:54:43: start X-correlation... INFO @ Sat, 11 Nov 2017 00:54:43: end of X-cor INFO @ Sat, 11 Nov 2017 00:54:43: #2 finished! INFO @ Sat, 11 Nov 2017 00:54:43: #2 predicted fragment length is 66 bps INFO @ Sat, 11 Nov 2017 00:54:43: #2 alternative fragment length(s) may be 66 bps INFO @ Sat, 11 Nov 2017 00:54:43: #2.2 Generate R script for model : SRX1068225.05_model.r WARNING @ Sat, 11 Nov 2017 00:54:43: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 00:54:43: #2 You may need to consider one of the other alternative d(s): 66 WARNING @ Sat, 11 Nov 2017 00:54:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 00:54:43: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:54:43: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:54:45: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:54:45: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:54:45: #1 total tags in treatment: 91326243 INFO @ Sat, 11 Nov 2017 00:54:45: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:54:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:54:47: #1 tags after filtering in treatment: 91326229 INFO @ Sat, 11 Nov 2017 00:54:47: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:54:47: #1 finished! INFO @ Sat, 11 Nov 2017 00:54:47: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:54:47: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:54:47: #2 number of paired peaks: 7241 INFO @ Sat, 11 Nov 2017 00:54:47: start model_add_line... INFO @ Sat, 11 Nov 2017 00:54:48: start X-correlation... INFO @ Sat, 11 Nov 2017 00:54:48: end of X-cor INFO @ Sat, 11 Nov 2017 00:54:48: #2 finished! INFO @ Sat, 11 Nov 2017 00:54:48: #2 predicted fragment length is 66 bps INFO @ Sat, 11 Nov 2017 00:54:48: #2 alternative fragment length(s) may be 66 bps INFO @ Sat, 11 Nov 2017 00:54:48: #2.2 Generate R script for model : SRX1068225.20_model.r WARNING @ Sat, 11 Nov 2017 00:54:48: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 00:54:48: #2 You may need to consider one of the other alternative d(s): 66 WARNING @ Sat, 11 Nov 2017 00:54:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 00:54:48: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:54:48: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:54:55: #2 number of paired peaks: 7241 INFO @ Sat, 11 Nov 2017 00:54:55: start model_add_line... INFO @ Sat, 11 Nov 2017 00:54:56: start X-correlation... INFO @ Sat, 11 Nov 2017 00:54:56: end of X-cor INFO @ Sat, 11 Nov 2017 00:54:56: #2 finished! INFO @ Sat, 11 Nov 2017 00:54:56: #2 predicted fragment length is 66 bps INFO @ Sat, 11 Nov 2017 00:54:56: #2 alternative fragment length(s) may be 66 bps INFO @ Sat, 11 Nov 2017 00:54:56: #2.2 Generate R script for model : SRX1068225.10_model.r WARNING @ Sat, 11 Nov 2017 00:54:56: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 00:54:56: #2 You may need to consider one of the other alternative d(s): 66 WARNING @ Sat, 11 Nov 2017 00:54:56: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 00:54:56: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:54:56: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:58:19: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:58:33: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:58:39: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 01:00:19: #4 Write output xls file... SRX1068225.20_peaks.xls INFO @ Sat, 11 Nov 2017 01:00:19: #4 Write peak in narrowPeak format file... SRX1068225.20_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 01:00:19: #4 Write summits bed file... SRX1068225.20_summits.bed INFO @ Sat, 11 Nov 2017 01:00:19: Done! pass1 - making usageList (39 chroms): 1 millis pass2 - checking and writing primary data (1374 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 01:00:37: #4 Write output xls file... SRX1068225.05_peaks.xls INFO @ Sat, 11 Nov 2017 01:00:37: #4 Write peak in narrowPeak format file... SRX1068225.05_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 01:00:37: #4 Write summits bed file... SRX1068225.05_summits.bed INFO @ Sat, 11 Nov 2017 01:00:37: Done! pass1 - making usageList (82 chroms): 2 millis pass2 - checking and writing primary data (7210 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 01:00:38: #4 Write output xls file... SRX1068225.10_peaks.xls INFO @ Sat, 11 Nov 2017 01:00:38: #4 Write peak in narrowPeak format file... SRX1068225.10_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 01:00:38: #4 Write summits bed file... SRX1068225.10_summits.bed INFO @ Sat, 11 Nov 2017 01:00:38: Done! pass1 - making usageList (56 chroms): 1 millis pass2 - checking and writing primary data (3578 records, 4 fields): 9 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。