Job ID = 10223669 SRX = ERX2745143 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T20:36:39 prefetch.2.10.7: 1) Downloading 'ERR2731918'... 2020-10-15T20:36:39 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T20:38:43 prefetch.2.10.7: HTTPS download succeed 2020-10-15T20:38:43 prefetch.2.10.7: 1) 'ERR2731918' was downloaded successfully Read 86628423 spots for ERR2731918/ERR2731918.sra Written 86628423 spots for ERR2731918/ERR2731918.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:03:37 86628423 reads; of these: 86628423 (100.00%) were unpaired; of these: 2548555 (2.94%) aligned 0 times 58852699 (67.94%) aligned exactly 1 time 25227169 (29.12%) aligned >1 times 97.06% overall alignment rate Time searching: 01:03:39 Overall time: 01:03:39 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 15986922 / 84079868 = 0.1901 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 07:01:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 07:01:22: #1 read tag files... INFO @ Fri, 16 Oct 2020 07:01:22: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 07:01:28: 1000000 INFO @ Fri, 16 Oct 2020 07:01:34: 2000000 INFO @ Fri, 16 Oct 2020 07:01:40: 3000000 INFO @ Fri, 16 Oct 2020 07:01:46: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 07:01:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 07:01:52: #1 read tag files... INFO @ Fri, 16 Oct 2020 07:01:52: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 07:01:52: 5000000 INFO @ Fri, 16 Oct 2020 07:01:58: 1000000 INFO @ Fri, 16 Oct 2020 07:01:59: 6000000 INFO @ Fri, 16 Oct 2020 07:02:05: 2000000 INFO @ Fri, 16 Oct 2020 07:02:05: 7000000 INFO @ Fri, 16 Oct 2020 07:02:12: 3000000 INFO @ Fri, 16 Oct 2020 07:02:12: 8000000 INFO @ Fri, 16 Oct 2020 07:02:18: 4000000 INFO @ Fri, 16 Oct 2020 07:02:18: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 07:02:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 07:02:22: #1 read tag files... INFO @ Fri, 16 Oct 2020 07:02:22: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 07:02:25: 5000000 INFO @ Fri, 16 Oct 2020 07:02:25: 10000000 INFO @ Fri, 16 Oct 2020 07:02:28: 1000000 INFO @ Fri, 16 Oct 2020 07:02:32: 6000000 INFO @ Fri, 16 Oct 2020 07:02:32: 11000000 INFO @ Fri, 16 Oct 2020 07:02:34: 2000000 INFO @ Fri, 16 Oct 2020 07:02:38: 12000000 INFO @ Fri, 16 Oct 2020 07:02:39: 7000000 INFO @ Fri, 16 Oct 2020 07:02:40: 3000000 INFO @ Fri, 16 Oct 2020 07:02:45: 13000000 INFO @ Fri, 16 Oct 2020 07:02:45: 8000000 INFO @ Fri, 16 Oct 2020 07:02:46: 4000000 INFO @ Fri, 16 Oct 2020 07:02:52: 14000000 INFO @ Fri, 16 Oct 2020 07:02:52: 5000000 INFO @ Fri, 16 Oct 2020 07:02:52: 9000000 INFO @ Fri, 16 Oct 2020 07:02:58: 6000000 INFO @ Fri, 16 Oct 2020 07:02:58: 15000000 INFO @ Fri, 16 Oct 2020 07:02:59: 10000000 INFO @ Fri, 16 Oct 2020 07:03:04: 7000000 INFO @ Fri, 16 Oct 2020 07:03:05: 16000000 INFO @ Fri, 16 Oct 2020 07:03:06: 11000000 INFO @ Fri, 16 Oct 2020 07:03:10: 8000000 INFO @ Fri, 16 Oct 2020 07:03:12: 17000000 INFO @ Fri, 16 Oct 2020 07:03:12: 12000000 INFO @ Fri, 16 Oct 2020 07:03:16: 9000000 INFO @ Fri, 16 Oct 2020 07:03:18: 18000000 INFO @ Fri, 16 Oct 2020 07:03:19: 13000000 INFO @ Fri, 16 Oct 2020 07:03:21: 10000000 INFO @ Fri, 16 Oct 2020 07:03:25: 19000000 INFO @ Fri, 16 Oct 2020 07:03:26: 14000000 INFO @ Fri, 16 Oct 2020 07:03:27: 11000000 INFO @ Fri, 16 Oct 2020 07:03:31: 20000000 INFO @ Fri, 16 Oct 2020 07:03:33: 15000000 INFO @ Fri, 16 Oct 2020 07:03:33: 12000000 INFO @ Fri, 16 Oct 2020 07:03:38: 21000000 INFO @ Fri, 16 Oct 2020 07:03:39: 13000000 INFO @ Fri, 16 Oct 2020 07:03:40: 16000000 INFO @ Fri, 16 Oct 2020 07:03:45: 22000000 INFO @ Fri, 16 Oct 2020 07:03:45: 14000000 INFO @ Fri, 16 Oct 2020 07:03:47: 17000000 INFO @ Fri, 16 Oct 2020 07:03:51: 23000000 INFO @ Fri, 16 Oct 2020 07:03:51: 15000000 INFO @ Fri, 16 Oct 2020 07:03:54: 18000000 INFO @ Fri, 16 Oct 2020 07:03:57: 16000000 INFO @ Fri, 16 Oct 2020 07:03:58: 24000000 INFO @ Fri, 16 Oct 2020 07:04:00: 19000000 INFO @ Fri, 16 Oct 2020 07:04:03: 17000000 INFO @ Fri, 16 Oct 2020 07:04:04: 25000000 INFO @ Fri, 16 Oct 2020 07:04:07: 20000000 INFO @ Fri, 16 Oct 2020 07:04:09: 18000000 INFO @ Fri, 16 Oct 2020 07:04:11: 26000000 INFO @ Fri, 16 Oct 2020 07:04:14: 21000000 INFO @ Fri, 16 Oct 2020 07:04:15: 19000000 INFO @ Fri, 16 Oct 2020 07:04:17: 27000000 INFO @ Fri, 16 Oct 2020 07:04:20: 22000000 INFO @ Fri, 16 Oct 2020 07:04:21: 20000000 INFO @ Fri, 16 Oct 2020 07:04:24: 28000000 INFO @ Fri, 16 Oct 2020 07:04:27: 21000000 INFO @ Fri, 16 Oct 2020 07:04:27: 23000000 INFO @ Fri, 16 Oct 2020 07:04:31: 29000000 INFO @ Fri, 16 Oct 2020 07:04:33: 22000000 INFO @ Fri, 16 Oct 2020 07:04:34: 24000000 INFO @ Fri, 16 Oct 2020 07:04:37: 30000000 INFO @ Fri, 16 Oct 2020 07:04:39: 23000000 INFO @ Fri, 16 Oct 2020 07:04:41: 25000000 INFO @ Fri, 16 Oct 2020 07:04:44: 31000000 INFO @ Fri, 16 Oct 2020 07:04:45: 24000000 INFO @ Fri, 16 Oct 2020 07:04:47: 26000000 INFO @ Fri, 16 Oct 2020 07:04:50: 25000000 INFO @ Fri, 16 Oct 2020 07:04:50: 32000000 INFO @ Fri, 16 Oct 2020 07:04:54: 27000000 INFO @ Fri, 16 Oct 2020 07:04:56: 26000000 INFO @ Fri, 16 Oct 2020 07:04:57: 33000000 INFO @ Fri, 16 Oct 2020 07:05:00: 28000000 INFO @ Fri, 16 Oct 2020 07:05:02: 27000000 INFO @ Fri, 16 Oct 2020 07:05:04: 34000000 INFO @ Fri, 16 Oct 2020 07:05:07: 29000000 INFO @ Fri, 16 Oct 2020 07:05:08: 28000000 INFO @ Fri, 16 Oct 2020 07:05:10: 35000000 INFO @ Fri, 16 Oct 2020 07:05:14: 30000000 INFO @ Fri, 16 Oct 2020 07:05:14: 29000000 INFO @ Fri, 16 Oct 2020 07:05:17: 36000000 INFO @ Fri, 16 Oct 2020 07:05:20: 30000000 INFO @ Fri, 16 Oct 2020 07:05:21: 31000000 INFO @ Fri, 16 Oct 2020 07:05:24: 37000000 INFO @ Fri, 16 Oct 2020 07:05:26: 31000000 INFO @ Fri, 16 Oct 2020 07:05:27: 32000000 INFO @ Fri, 16 Oct 2020 07:05:30: 38000000 INFO @ Fri, 16 Oct 2020 07:05:32: 32000000 INFO @ Fri, 16 Oct 2020 07:05:34: 33000000 INFO @ Fri, 16 Oct 2020 07:05:37: 39000000 INFO @ Fri, 16 Oct 2020 07:05:38: 33000000 INFO @ Fri, 16 Oct 2020 07:05:41: 34000000 INFO @ Fri, 16 Oct 2020 07:05:43: 40000000 INFO @ Fri, 16 Oct 2020 07:05:44: 34000000 INFO @ Fri, 16 Oct 2020 07:05:47: 35000000 INFO @ Fri, 16 Oct 2020 07:05:50: 41000000 INFO @ Fri, 16 Oct 2020 07:05:50: 35000000 INFO @ Fri, 16 Oct 2020 07:05:54: 36000000 INFO @ Fri, 16 Oct 2020 07:05:56: 36000000 INFO @ Fri, 16 Oct 2020 07:05:56: 42000000 INFO @ Fri, 16 Oct 2020 07:06:01: 37000000 INFO @ Fri, 16 Oct 2020 07:06:02: 37000000 INFO @ Fri, 16 Oct 2020 07:06:03: 43000000 INFO @ Fri, 16 Oct 2020 07:06:08: 38000000 INFO @ Fri, 16 Oct 2020 07:06:08: 38000000 INFO @ Fri, 16 Oct 2020 07:06:10: 44000000 INFO @ Fri, 16 Oct 2020 07:06:14: 39000000 INFO @ Fri, 16 Oct 2020 07:06:15: 39000000 INFO @ Fri, 16 Oct 2020 07:06:16: 45000000 INFO @ Fri, 16 Oct 2020 07:06:21: 40000000 INFO @ Fri, 16 Oct 2020 07:06:22: 40000000 INFO @ Fri, 16 Oct 2020 07:06:23: 46000000 INFO @ Fri, 16 Oct 2020 07:06:28: 41000000 INFO @ Fri, 16 Oct 2020 07:06:29: 41000000 INFO @ Fri, 16 Oct 2020 07:06:30: 47000000 INFO @ Fri, 16 Oct 2020 07:06:35: 42000000 INFO @ Fri, 16 Oct 2020 07:06:35: 42000000 INFO @ Fri, 16 Oct 2020 07:06:36: 48000000 INFO @ Fri, 16 Oct 2020 07:06:41: 43000000 INFO @ Fri, 16 Oct 2020 07:06:42: 43000000 INFO @ Fri, 16 Oct 2020 07:06:43: 49000000 INFO @ Fri, 16 Oct 2020 07:06:48: 44000000 INFO @ Fri, 16 Oct 2020 07:06:49: 44000000 INFO @ Fri, 16 Oct 2020 07:06:49: 50000000 INFO @ Fri, 16 Oct 2020 07:06:55: 45000000 INFO @ Fri, 16 Oct 2020 07:06:56: 45000000 INFO @ Fri, 16 Oct 2020 07:06:56: 51000000 INFO @ Fri, 16 Oct 2020 07:07:01: 46000000 INFO @ Fri, 16 Oct 2020 07:07:02: 52000000 INFO @ Fri, 16 Oct 2020 07:07:02: 46000000 INFO @ Fri, 16 Oct 2020 07:07:08: 47000000 INFO @ Fri, 16 Oct 2020 07:07:09: 53000000 INFO @ Fri, 16 Oct 2020 07:07:09: 47000000 INFO @ Fri, 16 Oct 2020 07:07:15: 48000000 INFO @ Fri, 16 Oct 2020 07:07:15: 54000000 INFO @ Fri, 16 Oct 2020 07:07:15: 48000000 INFO @ Fri, 16 Oct 2020 07:07:21: 49000000 INFO @ Fri, 16 Oct 2020 07:07:22: 55000000 INFO @ Fri, 16 Oct 2020 07:07:22: 49000000 INFO @ Fri, 16 Oct 2020 07:07:28: 50000000 INFO @ Fri, 16 Oct 2020 07:07:28: 56000000 INFO @ Fri, 16 Oct 2020 07:07:29: 50000000 INFO @ Fri, 16 Oct 2020 07:07:34: 51000000 INFO @ Fri, 16 Oct 2020 07:07:35: 57000000 INFO @ Fri, 16 Oct 2020 07:07:35: 51000000 INFO @ Fri, 16 Oct 2020 07:07:41: 52000000 INFO @ Fri, 16 Oct 2020 07:07:41: 58000000 INFO @ Fri, 16 Oct 2020 07:07:42: 52000000 INFO @ Fri, 16 Oct 2020 07:07:47: 53000000 INFO @ Fri, 16 Oct 2020 07:07:48: 59000000 INFO @ Fri, 16 Oct 2020 07:07:48: 53000000 INFO @ Fri, 16 Oct 2020 07:07:54: 54000000 INFO @ Fri, 16 Oct 2020 07:07:54: 60000000 INFO @ Fri, 16 Oct 2020 07:07:55: 54000000 INFO @ Fri, 16 Oct 2020 07:08:01: 55000000 INFO @ Fri, 16 Oct 2020 07:08:01: 61000000 INFO @ Fri, 16 Oct 2020 07:08:01: 55000000 INFO @ Fri, 16 Oct 2020 07:08:07: 56000000 INFO @ Fri, 16 Oct 2020 07:08:07: 62000000 INFO @ Fri, 16 Oct 2020 07:08:08: 56000000 INFO @ Fri, 16 Oct 2020 07:08:13: 63000000 INFO @ Fri, 16 Oct 2020 07:08:14: 57000000 INFO @ Fri, 16 Oct 2020 07:08:14: 57000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 07:08:20: 64000000 INFO @ Fri, 16 Oct 2020 07:08:20: 58000000 INFO @ Fri, 16 Oct 2020 07:08:21: 58000000 INFO @ Fri, 16 Oct 2020 07:08:26: 65000000 INFO @ Fri, 16 Oct 2020 07:08:27: 59000000 INFO @ Fri, 16 Oct 2020 07:08:28: 59000000 INFO @ Fri, 16 Oct 2020 07:08:33: 66000000 INFO @ Fri, 16 Oct 2020 07:08:34: 60000000 INFO @ Fri, 16 Oct 2020 07:08:35: 60000000 INFO @ Fri, 16 Oct 2020 07:08:39: 67000000 INFO @ Fri, 16 Oct 2020 07:08:41: 61000000 INFO @ Fri, 16 Oct 2020 07:08:41: 61000000 INFO @ Fri, 16 Oct 2020 07:08:46: 68000000 INFO @ Fri, 16 Oct 2020 07:08:47: 62000000 INFO @ Fri, 16 Oct 2020 07:08:47: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:08:47: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:08:47: #1 total tags in treatment: 68092946 INFO @ Fri, 16 Oct 2020 07:08:47: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:08:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:08:48: 62000000 INFO @ Fri, 16 Oct 2020 07:08:48: #1 tags after filtering in treatment: 68092921 INFO @ Fri, 16 Oct 2020 07:08:48: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:08:48: #1 finished! INFO @ Fri, 16 Oct 2020 07:08:48: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:08:48: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:08:54: 63000000 INFO @ Fri, 16 Oct 2020 07:08:54: #2 number of paired peaks: 6447 INFO @ Fri, 16 Oct 2020 07:08:54: start model_add_line... INFO @ Fri, 16 Oct 2020 07:08:54: start X-correlation... INFO @ Fri, 16 Oct 2020 07:08:54: end of X-cor INFO @ Fri, 16 Oct 2020 07:08:54: #2 finished! INFO @ Fri, 16 Oct 2020 07:08:54: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 07:08:54: #2 alternative fragment length(s) may be 50,576 bps INFO @ Fri, 16 Oct 2020 07:08:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.05_model.r WARNING @ Fri, 16 Oct 2020 07:08:54: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:08:54: #2 You may need to consider one of the other alternative d(s): 50,576 WARNING @ Fri, 16 Oct 2020 07:08:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:08:54: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:08:54: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 07:08:54: 63000000 INFO @ Fri, 16 Oct 2020 07:09:00: 64000000 INFO @ Fri, 16 Oct 2020 07:09:01: 64000000 INFO @ Fri, 16 Oct 2020 07:09:07: 65000000 INFO @ Fri, 16 Oct 2020 07:09:07: 65000000 INFO @ Fri, 16 Oct 2020 07:09:13: 66000000 INFO @ Fri, 16 Oct 2020 07:09:14: 66000000 INFO @ Fri, 16 Oct 2020 07:09:19: 67000000 INFO @ Fri, 16 Oct 2020 07:09:20: 67000000 INFO @ Fri, 16 Oct 2020 07:09:26: 68000000 INFO @ Fri, 16 Oct 2020 07:09:27: 68000000 INFO @ Fri, 16 Oct 2020 07:09:27: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:09:27: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:09:27: #1 total tags in treatment: 68092946 INFO @ Fri, 16 Oct 2020 07:09:27: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:09:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:09:28: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:09:28: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:09:28: #1 total tags in treatment: 68092946 INFO @ Fri, 16 Oct 2020 07:09:28: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:09:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:09:28: #1 tags after filtering in treatment: 68092921 INFO @ Fri, 16 Oct 2020 07:09:28: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:09:28: #1 finished! INFO @ Fri, 16 Oct 2020 07:09:28: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:09:28: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:09:29: #1 tags after filtering in treatment: 68092921 INFO @ Fri, 16 Oct 2020 07:09:29: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:09:29: #1 finished! INFO @ Fri, 16 Oct 2020 07:09:29: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:09:29: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:09:34: #2 number of paired peaks: 6447 INFO @ Fri, 16 Oct 2020 07:09:34: start model_add_line... INFO @ Fri, 16 Oct 2020 07:09:34: start X-correlation... INFO @ Fri, 16 Oct 2020 07:09:34: end of X-cor INFO @ Fri, 16 Oct 2020 07:09:34: #2 finished! INFO @ Fri, 16 Oct 2020 07:09:34: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 07:09:34: #2 alternative fragment length(s) may be 50,576 bps INFO @ Fri, 16 Oct 2020 07:09:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.10_model.r WARNING @ Fri, 16 Oct 2020 07:09:34: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:09:34: #2 You may need to consider one of the other alternative d(s): 50,576 WARNING @ Fri, 16 Oct 2020 07:09:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:09:34: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:09:34: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 07:09:34: #2 number of paired peaks: 6447 INFO @ Fri, 16 Oct 2020 07:09:34: start model_add_line... INFO @ Fri, 16 Oct 2020 07:09:35: start X-correlation... INFO @ Fri, 16 Oct 2020 07:09:35: end of X-cor INFO @ Fri, 16 Oct 2020 07:09:35: #2 finished! INFO @ Fri, 16 Oct 2020 07:09:35: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 07:09:35: #2 alternative fragment length(s) may be 50,576 bps INFO @ Fri, 16 Oct 2020 07:09:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.20_model.r WARNING @ Fri, 16 Oct 2020 07:09:35: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:09:35: #2 You may need to consider one of the other alternative d(s): 50,576 WARNING @ Fri, 16 Oct 2020 07:09:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:09:35: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:09:35: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 07:11:27: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:12:03: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:12:08: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:12:49: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.05_peaks.xls INFO @ Fri, 16 Oct 2020 07:12:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:12:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.05_summits.bed INFO @ Fri, 16 Oct 2020 07:12:49: Done! pass1 - making usageList (74 chroms): 10 millis pass2 - checking and writing primary data (3595 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 07:13:23: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.10_peaks.xls INFO @ Fri, 16 Oct 2020 07:13:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:13:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.10_summits.bed INFO @ Fri, 16 Oct 2020 07:13:23: Done! pass1 - making usageList (55 chroms): 1 millis pass2 - checking and writing primary data (1810 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 07:13:28: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.20_peaks.xls INFO @ Fri, 16 Oct 2020 07:13:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:13:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745143/ERX2745143.20_summits.bed INFO @ Fri, 16 Oct 2020 07:13:28: Done! pass1 - making usageList (43 chroms): 1 millis pass2 - checking and writing primary data (796 records, 4 fields): 4 millis CompletedMACS2peakCalling