Job ID = 10223668 SRX = ERX2745142 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T20:36:25 prefetch.2.10.7: 1) Downloading 'ERR2731917'... 2020-10-15T20:36:25 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T20:38:08 prefetch.2.10.7: HTTPS download succeed 2020-10-15T20:38:08 prefetch.2.10.7: 1) 'ERR2731917' was downloaded successfully Read 87087342 spots for ERR2731917/ERR2731917.sra Written 87087342 spots for ERR2731917/ERR2731917.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:02 Multiseed full-index search: 01:09:41 87087342 reads; of these: 87087342 (100.00%) were unpaired; of these: 2498129 (2.87%) aligned 0 times 60161697 (69.08%) aligned exactly 1 time 24427516 (28.05%) aligned >1 times 97.13% overall alignment rate Time searching: 01:09:46 Overall time: 01:09:46 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 17118970 / 84589213 = 0.2024 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 07:07:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 07:07:00: #1 read tag files... INFO @ Fri, 16 Oct 2020 07:07:00: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 07:07:05: 1000000 INFO @ Fri, 16 Oct 2020 07:07:11: 2000000 INFO @ Fri, 16 Oct 2020 07:07:16: 3000000 INFO @ Fri, 16 Oct 2020 07:07:21: 4000000 INFO @ Fri, 16 Oct 2020 07:07:26: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 07:07:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 07:07:30: #1 read tag files... INFO @ Fri, 16 Oct 2020 07:07:30: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 07:07:31: 6000000 INFO @ Fri, 16 Oct 2020 07:07:36: 1000000 INFO @ Fri, 16 Oct 2020 07:07:37: 7000000 INFO @ Fri, 16 Oct 2020 07:07:41: 2000000 INFO @ Fri, 16 Oct 2020 07:07:42: 8000000 INFO @ Fri, 16 Oct 2020 07:07:46: 3000000 INFO @ Fri, 16 Oct 2020 07:07:47: 9000000 INFO @ Fri, 16 Oct 2020 07:07:52: 4000000 INFO @ Fri, 16 Oct 2020 07:07:53: 10000000 INFO @ Fri, 16 Oct 2020 07:07:57: 5000000 INFO @ Fri, 16 Oct 2020 07:07:58: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 07:08:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 07:08:00: #1 read tag files... INFO @ Fri, 16 Oct 2020 07:08:00: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 07:08:02: 6000000 INFO @ Fri, 16 Oct 2020 07:08:03: 12000000 INFO @ Fri, 16 Oct 2020 07:08:05: 1000000 INFO @ Fri, 16 Oct 2020 07:08:08: 7000000 INFO @ Fri, 16 Oct 2020 07:08:09: 13000000 INFO @ Fri, 16 Oct 2020 07:08:10: 2000000 INFO @ Fri, 16 Oct 2020 07:08:13: 8000000 INFO @ Fri, 16 Oct 2020 07:08:14: 14000000 INFO @ Fri, 16 Oct 2020 07:08:16: 3000000 INFO @ Fri, 16 Oct 2020 07:08:18: 9000000 INFO @ Fri, 16 Oct 2020 07:08:19: 15000000 INFO @ Fri, 16 Oct 2020 07:08:21: 4000000 INFO @ Fri, 16 Oct 2020 07:08:23: 10000000 INFO @ Fri, 16 Oct 2020 07:08:25: 16000000 INFO @ Fri, 16 Oct 2020 07:08:26: 5000000 INFO @ Fri, 16 Oct 2020 07:08:29: 11000000 INFO @ Fri, 16 Oct 2020 07:08:30: 17000000 INFO @ Fri, 16 Oct 2020 07:08:32: 6000000 INFO @ Fri, 16 Oct 2020 07:08:34: 12000000 INFO @ Fri, 16 Oct 2020 07:08:35: 18000000 INFO @ Fri, 16 Oct 2020 07:08:37: 7000000 INFO @ Fri, 16 Oct 2020 07:08:39: 13000000 INFO @ Fri, 16 Oct 2020 07:08:41: 19000000 INFO @ Fri, 16 Oct 2020 07:08:42: 8000000 INFO @ Fri, 16 Oct 2020 07:08:44: 14000000 INFO @ Fri, 16 Oct 2020 07:08:46: 20000000 INFO @ Fri, 16 Oct 2020 07:08:47: 9000000 INFO @ Fri, 16 Oct 2020 07:08:50: 15000000 INFO @ Fri, 16 Oct 2020 07:08:51: 21000000 INFO @ Fri, 16 Oct 2020 07:08:53: 10000000 INFO @ Fri, 16 Oct 2020 07:08:55: 16000000 INFO @ Fri, 16 Oct 2020 07:08:56: 22000000 INFO @ Fri, 16 Oct 2020 07:08:58: 11000000 INFO @ Fri, 16 Oct 2020 07:09:00: 17000000 INFO @ Fri, 16 Oct 2020 07:09:02: 23000000 INFO @ Fri, 16 Oct 2020 07:09:03: 12000000 INFO @ Fri, 16 Oct 2020 07:09:05: 18000000 INFO @ Fri, 16 Oct 2020 07:09:07: 24000000 INFO @ Fri, 16 Oct 2020 07:09:09: 13000000 INFO @ Fri, 16 Oct 2020 07:09:11: 19000000 INFO @ Fri, 16 Oct 2020 07:09:12: 25000000 INFO @ Fri, 16 Oct 2020 07:09:14: 14000000 INFO @ Fri, 16 Oct 2020 07:09:16: 20000000 INFO @ Fri, 16 Oct 2020 07:09:18: 26000000 INFO @ Fri, 16 Oct 2020 07:09:20: 15000000 INFO @ Fri, 16 Oct 2020 07:09:21: 21000000 INFO @ Fri, 16 Oct 2020 07:09:23: 27000000 INFO @ Fri, 16 Oct 2020 07:09:25: 16000000 INFO @ Fri, 16 Oct 2020 07:09:27: 22000000 INFO @ Fri, 16 Oct 2020 07:09:28: 28000000 INFO @ Fri, 16 Oct 2020 07:09:31: 17000000 INFO @ Fri, 16 Oct 2020 07:09:32: 23000000 INFO @ Fri, 16 Oct 2020 07:09:34: 29000000 INFO @ Fri, 16 Oct 2020 07:09:36: 18000000 INFO @ Fri, 16 Oct 2020 07:09:37: 24000000 INFO @ Fri, 16 Oct 2020 07:09:39: 30000000 INFO @ Fri, 16 Oct 2020 07:09:41: 19000000 INFO @ Fri, 16 Oct 2020 07:09:42: 25000000 INFO @ Fri, 16 Oct 2020 07:09:44: 31000000 INFO @ Fri, 16 Oct 2020 07:09:47: 20000000 INFO @ Fri, 16 Oct 2020 07:09:48: 26000000 INFO @ Fri, 16 Oct 2020 07:09:50: 32000000 INFO @ Fri, 16 Oct 2020 07:09:52: 21000000 INFO @ Fri, 16 Oct 2020 07:09:53: 27000000 INFO @ Fri, 16 Oct 2020 07:09:55: 33000000 INFO @ Fri, 16 Oct 2020 07:09:58: 22000000 INFO @ Fri, 16 Oct 2020 07:09:58: 28000000 INFO @ Fri, 16 Oct 2020 07:10:00: 34000000 INFO @ Fri, 16 Oct 2020 07:10:03: 23000000 INFO @ Fri, 16 Oct 2020 07:10:04: 29000000 INFO @ Fri, 16 Oct 2020 07:10:05: 35000000 INFO @ Fri, 16 Oct 2020 07:10:08: 24000000 INFO @ Fri, 16 Oct 2020 07:10:09: 30000000 INFO @ Fri, 16 Oct 2020 07:10:11: 36000000 INFO @ Fri, 16 Oct 2020 07:10:14: 25000000 INFO @ Fri, 16 Oct 2020 07:10:14: 31000000 INFO @ Fri, 16 Oct 2020 07:10:16: 37000000 INFO @ Fri, 16 Oct 2020 07:10:19: 26000000 INFO @ Fri, 16 Oct 2020 07:10:20: 32000000 INFO @ Fri, 16 Oct 2020 07:10:21: 38000000 INFO @ Fri, 16 Oct 2020 07:10:24: 27000000 INFO @ Fri, 16 Oct 2020 07:10:25: 33000000 INFO @ Fri, 16 Oct 2020 07:10:26: 39000000 INFO @ Fri, 16 Oct 2020 07:10:30: 28000000 INFO @ Fri, 16 Oct 2020 07:10:30: 34000000 INFO @ Fri, 16 Oct 2020 07:10:32: 40000000 INFO @ Fri, 16 Oct 2020 07:10:35: 29000000 INFO @ Fri, 16 Oct 2020 07:10:35: 35000000 INFO @ Fri, 16 Oct 2020 07:10:37: 41000000 INFO @ Fri, 16 Oct 2020 07:10:40: 30000000 INFO @ Fri, 16 Oct 2020 07:10:41: 36000000 INFO @ Fri, 16 Oct 2020 07:10:42: 42000000 INFO @ Fri, 16 Oct 2020 07:10:45: 31000000 INFO @ Fri, 16 Oct 2020 07:10:46: 37000000 INFO @ Fri, 16 Oct 2020 07:10:47: 43000000 INFO @ Fri, 16 Oct 2020 07:10:51: 32000000 INFO @ Fri, 16 Oct 2020 07:10:51: 38000000 INFO @ Fri, 16 Oct 2020 07:10:53: 44000000 INFO @ Fri, 16 Oct 2020 07:10:56: 33000000 INFO @ Fri, 16 Oct 2020 07:10:56: 39000000 INFO @ Fri, 16 Oct 2020 07:10:58: 45000000 INFO @ Fri, 16 Oct 2020 07:11:01: 34000000 INFO @ Fri, 16 Oct 2020 07:11:02: 40000000 INFO @ Fri, 16 Oct 2020 07:11:03: 46000000 INFO @ Fri, 16 Oct 2020 07:11:06: 35000000 INFO @ Fri, 16 Oct 2020 07:11:07: 41000000 INFO @ Fri, 16 Oct 2020 07:11:08: 47000000 INFO @ Fri, 16 Oct 2020 07:11:11: 36000000 INFO @ Fri, 16 Oct 2020 07:11:12: 42000000 INFO @ Fri, 16 Oct 2020 07:11:13: 48000000 INFO @ Fri, 16 Oct 2020 07:11:16: 37000000 INFO @ Fri, 16 Oct 2020 07:11:17: 43000000 INFO @ Fri, 16 Oct 2020 07:11:19: 49000000 INFO @ Fri, 16 Oct 2020 07:11:22: 38000000 INFO @ Fri, 16 Oct 2020 07:11:22: 44000000 INFO @ Fri, 16 Oct 2020 07:11:24: 50000000 INFO @ Fri, 16 Oct 2020 07:11:27: 39000000 INFO @ Fri, 16 Oct 2020 07:11:28: 45000000 INFO @ Fri, 16 Oct 2020 07:11:29: 51000000 INFO @ Fri, 16 Oct 2020 07:11:32: 40000000 INFO @ Fri, 16 Oct 2020 07:11:33: 46000000 INFO @ Fri, 16 Oct 2020 07:11:34: 52000000 INFO @ Fri, 16 Oct 2020 07:11:37: 41000000 INFO @ Fri, 16 Oct 2020 07:11:38: 47000000 INFO @ Fri, 16 Oct 2020 07:11:40: 53000000 INFO @ Fri, 16 Oct 2020 07:11:42: 42000000 INFO @ Fri, 16 Oct 2020 07:11:43: 48000000 INFO @ Fri, 16 Oct 2020 07:11:44: 54000000 INFO @ Fri, 16 Oct 2020 07:11:47: 43000000 INFO @ Fri, 16 Oct 2020 07:11:49: 49000000 INFO @ Fri, 16 Oct 2020 07:11:50: 55000000 INFO @ Fri, 16 Oct 2020 07:11:53: 44000000 INFO @ Fri, 16 Oct 2020 07:11:54: 50000000 INFO @ Fri, 16 Oct 2020 07:11:55: 56000000 INFO @ Fri, 16 Oct 2020 07:11:58: 45000000 INFO @ Fri, 16 Oct 2020 07:11:59: 51000000 INFO @ Fri, 16 Oct 2020 07:12:01: 57000000 INFO @ Fri, 16 Oct 2020 07:12:03: 46000000 INFO @ Fri, 16 Oct 2020 07:12:04: 52000000 INFO @ Fri, 16 Oct 2020 07:12:06: 58000000 INFO @ Fri, 16 Oct 2020 07:12:08: 47000000 INFO @ Fri, 16 Oct 2020 07:12:10: 53000000 INFO @ Fri, 16 Oct 2020 07:12:11: 59000000 INFO @ Fri, 16 Oct 2020 07:12:13: 48000000 INFO @ Fri, 16 Oct 2020 07:12:14: 54000000 INFO @ Fri, 16 Oct 2020 07:12:17: 60000000 INFO @ Fri, 16 Oct 2020 07:12:19: 49000000 INFO @ Fri, 16 Oct 2020 07:12:20: 55000000 INFO @ Fri, 16 Oct 2020 07:12:22: 61000000 INFO @ Fri, 16 Oct 2020 07:12:23: 50000000 INFO @ Fri, 16 Oct 2020 07:12:25: 56000000 INFO @ Fri, 16 Oct 2020 07:12:27: 62000000 INFO @ Fri, 16 Oct 2020 07:12:29: 51000000 INFO @ Fri, 16 Oct 2020 07:12:30: 57000000 INFO @ Fri, 16 Oct 2020 07:12:33: 63000000 INFO @ Fri, 16 Oct 2020 07:12:34: 52000000 INFO @ Fri, 16 Oct 2020 07:12:36: 58000000 INFO @ Fri, 16 Oct 2020 07:12:39: 64000000 INFO @ Fri, 16 Oct 2020 07:12:39: 53000000 INFO @ Fri, 16 Oct 2020 07:12:41: 59000000 INFO @ Fri, 16 Oct 2020 07:12:44: 54000000 INFO @ Fri, 16 Oct 2020 07:12:44: 65000000 INFO @ Fri, 16 Oct 2020 07:12:46: 60000000 INFO @ Fri, 16 Oct 2020 07:12:49: 55000000 INFO @ Fri, 16 Oct 2020 07:12:50: 66000000 INFO @ Fri, 16 Oct 2020 07:12:52: 61000000 INFO @ Fri, 16 Oct 2020 07:12:54: 56000000 INFO @ Fri, 16 Oct 2020 07:12:55: 67000000 INFO @ Fri, 16 Oct 2020 07:12:57: 62000000 INFO @ Fri, 16 Oct 2020 07:12:58: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:12:58: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:12:58: #1 total tags in treatment: 67470243 INFO @ Fri, 16 Oct 2020 07:12:58: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:12:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:12:59: 57000000 INFO @ Fri, 16 Oct 2020 07:12:59: #1 tags after filtering in treatment: 67470211 INFO @ Fri, 16 Oct 2020 07:12:59: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:12:59: #1 finished! INFO @ Fri, 16 Oct 2020 07:12:59: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:12:59: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:13:03: 63000000 INFO @ Fri, 16 Oct 2020 07:13:05: #2 number of paired peaks: 5795 INFO @ Fri, 16 Oct 2020 07:13:05: start model_add_line... INFO @ Fri, 16 Oct 2020 07:13:05: 58000000 INFO @ Fri, 16 Oct 2020 07:13:05: start X-correlation... INFO @ Fri, 16 Oct 2020 07:13:05: end of X-cor INFO @ Fri, 16 Oct 2020 07:13:05: #2 finished! INFO @ Fri, 16 Oct 2020 07:13:05: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 07:13:05: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 07:13:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.05_model.r WARNING @ Fri, 16 Oct 2020 07:13:05: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:13:05: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 07:13:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:13:05: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:13:05: #3 Pre-compute pvalue-qvalue table... BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 07:13:08: 64000000 INFO @ Fri, 16 Oct 2020 07:13:10: 59000000 INFO @ Fri, 16 Oct 2020 07:13:14: 65000000 INFO @ Fri, 16 Oct 2020 07:13:16: 60000000 INFO @ Fri, 16 Oct 2020 07:13:19: 66000000 INFO @ Fri, 16 Oct 2020 07:13:21: 61000000 INFO @ Fri, 16 Oct 2020 07:13:24: 67000000 INFO @ Fri, 16 Oct 2020 07:13:26: 62000000 INFO @ Fri, 16 Oct 2020 07:13:27: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:13:27: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:13:27: #1 total tags in treatment: 67470243 INFO @ Fri, 16 Oct 2020 07:13:27: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:13:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:13:29: #1 tags after filtering in treatment: 67470211 INFO @ Fri, 16 Oct 2020 07:13:29: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:13:29: #1 finished! INFO @ Fri, 16 Oct 2020 07:13:29: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:13:29: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:13:31: 63000000 INFO @ Fri, 16 Oct 2020 07:13:34: #2 number of paired peaks: 5795 INFO @ Fri, 16 Oct 2020 07:13:34: start model_add_line... INFO @ Fri, 16 Oct 2020 07:13:34: start X-correlation... INFO @ Fri, 16 Oct 2020 07:13:34: end of X-cor INFO @ Fri, 16 Oct 2020 07:13:34: #2 finished! INFO @ Fri, 16 Oct 2020 07:13:34: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 07:13:34: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 07:13:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.10_model.r WARNING @ Fri, 16 Oct 2020 07:13:34: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:13:34: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 07:13:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:13:34: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:13:34: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 07:13:37: 64000000 INFO @ Fri, 16 Oct 2020 07:13:42: 65000000 INFO @ Fri, 16 Oct 2020 07:13:47: 66000000 INFO @ Fri, 16 Oct 2020 07:13:52: 67000000 INFO @ Fri, 16 Oct 2020 07:13:55: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:13:55: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:13:55: #1 total tags in treatment: 67470243 INFO @ Fri, 16 Oct 2020 07:13:55: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:13:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:13:56: #1 tags after filtering in treatment: 67470211 INFO @ Fri, 16 Oct 2020 07:13:56: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:13:56: #1 finished! INFO @ Fri, 16 Oct 2020 07:13:56: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:13:56: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:14:01: #2 number of paired peaks: 5795 INFO @ Fri, 16 Oct 2020 07:14:01: start model_add_line... INFO @ Fri, 16 Oct 2020 07:14:02: start X-correlation... INFO @ Fri, 16 Oct 2020 07:14:02: end of X-cor INFO @ Fri, 16 Oct 2020 07:14:02: #2 finished! INFO @ Fri, 16 Oct 2020 07:14:02: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 07:14:02: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 07:14:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.20_model.r WARNING @ Fri, 16 Oct 2020 07:14:02: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:14:02: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 07:14:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:14:02: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:14:02: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 07:15:38: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 07:16:05: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:16:34: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:16:55: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.05_peaks.xls INFO @ Fri, 16 Oct 2020 07:16:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:16:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.05_summits.bed INFO @ Fri, 16 Oct 2020 07:16:55: Done! pass1 - making usageList (74 chroms): 1 millis pass2 - checking and writing primary data (3347 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 07:17:22: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.10_peaks.xls INFO @ Fri, 16 Oct 2020 07:17:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:17:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.10_summits.bed INFO @ Fri, 16 Oct 2020 07:17:22: Done! pass1 - making usageList (52 chroms): 1 millis pass2 - checking and writing primary data (1693 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 07:17:51: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.20_peaks.xls INFO @ Fri, 16 Oct 2020 07:17:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:17:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745142/ERX2745142.20_summits.bed INFO @ Fri, 16 Oct 2020 07:17:51: Done! pass1 - making usageList (42 chroms): 1 millis pass2 - checking and writing primary data (758 records, 4 fields): 3 millis CompletedMACS2peakCalling