Job ID = 10223665 SRX = ERX2745139 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T20:31:25 prefetch.2.10.7: 1) Downloading 'ERR2731914'... 2020-10-15T20:31:25 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T20:33:38 prefetch.2.10.7: HTTPS download succeed 2020-10-15T20:33:38 prefetch.2.10.7: 1) 'ERR2731914' was downloaded successfully Read 87241337 spots for ERR2731914/ERR2731914.sra Written 87241337 spots for ERR2731914/ERR2731914.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:03:10 87241337 reads; of these: 87241337 (100.00%) were unpaired; of these: 2901230 (3.33%) aligned 0 times 59670418 (68.40%) aligned exactly 1 time 24669689 (28.28%) aligned >1 times 96.67% overall alignment rate Time searching: 01:03:13 Overall time: 01:03:13 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 21645994 / 84340107 = 0.2567 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:54:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:54:18: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:54:18: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:54:24: 1000000 INFO @ Fri, 16 Oct 2020 06:54:30: 2000000 INFO @ Fri, 16 Oct 2020 06:54:35: 3000000 INFO @ Fri, 16 Oct 2020 06:54:41: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:54:47: 5000000 INFO @ Fri, 16 Oct 2020 06:54:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:54:48: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:54:48: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:54:54: 6000000 INFO @ Fri, 16 Oct 2020 06:54:54: 1000000 INFO @ Fri, 16 Oct 2020 06:55:00: 7000000 INFO @ Fri, 16 Oct 2020 06:55:00: 2000000 INFO @ Fri, 16 Oct 2020 06:55:06: 3000000 INFO @ Fri, 16 Oct 2020 06:55:06: 8000000 INFO @ Fri, 16 Oct 2020 06:55:12: 9000000 INFO @ Fri, 16 Oct 2020 06:55:13: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:55:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:55:18: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:55:18: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:55:19: 5000000 INFO @ Fri, 16 Oct 2020 06:55:19: 10000000 INFO @ Fri, 16 Oct 2020 06:55:25: 6000000 INFO @ Fri, 16 Oct 2020 06:55:25: 1000000 INFO @ Fri, 16 Oct 2020 06:55:26: 11000000 INFO @ Fri, 16 Oct 2020 06:55:31: 7000000 INFO @ Fri, 16 Oct 2020 06:55:31: 2000000 INFO @ Fri, 16 Oct 2020 06:55:32: 12000000 INFO @ Fri, 16 Oct 2020 06:55:37: 8000000 INFO @ Fri, 16 Oct 2020 06:55:37: 3000000 INFO @ Fri, 16 Oct 2020 06:55:39: 13000000 INFO @ Fri, 16 Oct 2020 06:55:42: 9000000 INFO @ Fri, 16 Oct 2020 06:55:44: 4000000 INFO @ Fri, 16 Oct 2020 06:55:46: 14000000 INFO @ Fri, 16 Oct 2020 06:55:48: 10000000 INFO @ Fri, 16 Oct 2020 06:55:50: 5000000 INFO @ Fri, 16 Oct 2020 06:55:53: 15000000 INFO @ Fri, 16 Oct 2020 06:55:54: 11000000 INFO @ Fri, 16 Oct 2020 06:55:57: 6000000 INFO @ Fri, 16 Oct 2020 06:55:59: 16000000 INFO @ Fri, 16 Oct 2020 06:56:01: 12000000 INFO @ Fri, 16 Oct 2020 06:56:04: 7000000 INFO @ Fri, 16 Oct 2020 06:56:06: 17000000 INFO @ Fri, 16 Oct 2020 06:56:07: 13000000 INFO @ Fri, 16 Oct 2020 06:56:10: 8000000 INFO @ Fri, 16 Oct 2020 06:56:13: 18000000 INFO @ Fri, 16 Oct 2020 06:56:13: 14000000 INFO @ Fri, 16 Oct 2020 06:56:17: 9000000 INFO @ Fri, 16 Oct 2020 06:56:19: 19000000 INFO @ Fri, 16 Oct 2020 06:56:19: 15000000 INFO @ Fri, 16 Oct 2020 06:56:24: 10000000 INFO @ Fri, 16 Oct 2020 06:56:26: 16000000 INFO @ Fri, 16 Oct 2020 06:56:26: 20000000 INFO @ Fri, 16 Oct 2020 06:56:30: 11000000 INFO @ Fri, 16 Oct 2020 06:56:32: 17000000 INFO @ Fri, 16 Oct 2020 06:56:32: 21000000 INFO @ Fri, 16 Oct 2020 06:56:37: 12000000 INFO @ Fri, 16 Oct 2020 06:56:38: 18000000 INFO @ Fri, 16 Oct 2020 06:56:39: 22000000 INFO @ Fri, 16 Oct 2020 06:56:44: 13000000 INFO @ Fri, 16 Oct 2020 06:56:45: 19000000 INFO @ Fri, 16 Oct 2020 06:56:45: 23000000 INFO @ Fri, 16 Oct 2020 06:56:50: 14000000 INFO @ Fri, 16 Oct 2020 06:56:51: 20000000 INFO @ Fri, 16 Oct 2020 06:56:52: 24000000 INFO @ Fri, 16 Oct 2020 06:56:57: 15000000 INFO @ Fri, 16 Oct 2020 06:56:57: 21000000 INFO @ Fri, 16 Oct 2020 06:56:58: 25000000 INFO @ Fri, 16 Oct 2020 06:57:03: 22000000 INFO @ Fri, 16 Oct 2020 06:57:03: 16000000 INFO @ Fri, 16 Oct 2020 06:57:05: 26000000 INFO @ Fri, 16 Oct 2020 06:57:10: 23000000 INFO @ Fri, 16 Oct 2020 06:57:10: 17000000 INFO @ Fri, 16 Oct 2020 06:57:11: 27000000 INFO @ Fri, 16 Oct 2020 06:57:16: 24000000 INFO @ Fri, 16 Oct 2020 06:57:17: 18000000 INFO @ Fri, 16 Oct 2020 06:57:18: 28000000 INFO @ Fri, 16 Oct 2020 06:57:23: 25000000 INFO @ Fri, 16 Oct 2020 06:57:23: 19000000 INFO @ Fri, 16 Oct 2020 06:57:24: 29000000 INFO @ Fri, 16 Oct 2020 06:57:30: 26000000 INFO @ Fri, 16 Oct 2020 06:57:30: 20000000 INFO @ Fri, 16 Oct 2020 06:57:31: 30000000 INFO @ Fri, 16 Oct 2020 06:57:36: 27000000 INFO @ Fri, 16 Oct 2020 06:57:37: 21000000 INFO @ Fri, 16 Oct 2020 06:57:37: 31000000 INFO @ Fri, 16 Oct 2020 06:57:43: 28000000 INFO @ Fri, 16 Oct 2020 06:57:43: 22000000 INFO @ Fri, 16 Oct 2020 06:57:43: 32000000 INFO @ Fri, 16 Oct 2020 06:57:50: 29000000 INFO @ Fri, 16 Oct 2020 06:57:50: 23000000 INFO @ Fri, 16 Oct 2020 06:57:50: 33000000 INFO @ Fri, 16 Oct 2020 06:57:56: 24000000 INFO @ Fri, 16 Oct 2020 06:57:56: 34000000 INFO @ Fri, 16 Oct 2020 06:57:57: 30000000 INFO @ Fri, 16 Oct 2020 06:58:03: 35000000 INFO @ Fri, 16 Oct 2020 06:58:03: 25000000 INFO @ Fri, 16 Oct 2020 06:58:03: 31000000 INFO @ Fri, 16 Oct 2020 06:58:09: 36000000 INFO @ Fri, 16 Oct 2020 06:58:09: 26000000 INFO @ Fri, 16 Oct 2020 06:58:10: 32000000 INFO @ Fri, 16 Oct 2020 06:58:16: 37000000 INFO @ Fri, 16 Oct 2020 06:58:16: 27000000 INFO @ Fri, 16 Oct 2020 06:58:17: 33000000 INFO @ Fri, 16 Oct 2020 06:58:22: 38000000 INFO @ Fri, 16 Oct 2020 06:58:23: 28000000 INFO @ Fri, 16 Oct 2020 06:58:23: 34000000 INFO @ Fri, 16 Oct 2020 06:58:29: 39000000 INFO @ Fri, 16 Oct 2020 06:58:29: 29000000 INFO @ Fri, 16 Oct 2020 06:58:29: 35000000 INFO @ Fri, 16 Oct 2020 06:58:35: 40000000 INFO @ Fri, 16 Oct 2020 06:58:36: 36000000 INFO @ Fri, 16 Oct 2020 06:58:36: 30000000 INFO @ Fri, 16 Oct 2020 06:58:41: 41000000 INFO @ Fri, 16 Oct 2020 06:58:42: 37000000 INFO @ Fri, 16 Oct 2020 06:58:42: 31000000 INFO @ Fri, 16 Oct 2020 06:58:48: 42000000 INFO @ Fri, 16 Oct 2020 06:58:48: 38000000 INFO @ Fri, 16 Oct 2020 06:58:49: 32000000 INFO @ Fri, 16 Oct 2020 06:58:54: 43000000 INFO @ Fri, 16 Oct 2020 06:58:55: 39000000 INFO @ Fri, 16 Oct 2020 06:58:56: 33000000 INFO @ Fri, 16 Oct 2020 06:59:01: 44000000 INFO @ Fri, 16 Oct 2020 06:59:01: 40000000 INFO @ Fri, 16 Oct 2020 06:59:02: 34000000 INFO @ Fri, 16 Oct 2020 06:59:07: 45000000 INFO @ Fri, 16 Oct 2020 06:59:08: 41000000 INFO @ Fri, 16 Oct 2020 06:59:09: 35000000 INFO @ Fri, 16 Oct 2020 06:59:13: 46000000 INFO @ Fri, 16 Oct 2020 06:59:15: 42000000 INFO @ Fri, 16 Oct 2020 06:59:15: 36000000 INFO @ Fri, 16 Oct 2020 06:59:20: 47000000 INFO @ Fri, 16 Oct 2020 06:59:21: 43000000 INFO @ Fri, 16 Oct 2020 06:59:22: 37000000 INFO @ Fri, 16 Oct 2020 06:59:26: 48000000 INFO @ Fri, 16 Oct 2020 06:59:28: 44000000 INFO @ Fri, 16 Oct 2020 06:59:29: 38000000 INFO @ Fri, 16 Oct 2020 06:59:33: 49000000 INFO @ Fri, 16 Oct 2020 06:59:35: 45000000 INFO @ Fri, 16 Oct 2020 06:59:35: 39000000 INFO @ Fri, 16 Oct 2020 06:59:39: 50000000 INFO @ Fri, 16 Oct 2020 06:59:41: 46000000 INFO @ Fri, 16 Oct 2020 06:59:42: 40000000 INFO @ Fri, 16 Oct 2020 06:59:46: 51000000 INFO @ Fri, 16 Oct 2020 06:59:48: 47000000 INFO @ Fri, 16 Oct 2020 06:59:49: 41000000 INFO @ Fri, 16 Oct 2020 06:59:52: 52000000 INFO @ Fri, 16 Oct 2020 06:59:54: 48000000 INFO @ Fri, 16 Oct 2020 06:59:55: 42000000 INFO @ Fri, 16 Oct 2020 06:59:58: 53000000 INFO @ Fri, 16 Oct 2020 07:00:01: 49000000 INFO @ Fri, 16 Oct 2020 07:00:02: 43000000 INFO @ Fri, 16 Oct 2020 07:00:05: 54000000 INFO @ Fri, 16 Oct 2020 07:00:08: 50000000 INFO @ Fri, 16 Oct 2020 07:00:09: 44000000 INFO @ Fri, 16 Oct 2020 07:00:11: 55000000 INFO @ Fri, 16 Oct 2020 07:00:14: 51000000 INFO @ Fri, 16 Oct 2020 07:00:15: 45000000 INFO @ Fri, 16 Oct 2020 07:00:18: 56000000 INFO @ Fri, 16 Oct 2020 07:00:21: 52000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 07:00:22: 46000000 INFO @ Fri, 16 Oct 2020 07:00:24: 57000000 INFO @ Fri, 16 Oct 2020 07:00:28: 53000000 INFO @ Fri, 16 Oct 2020 07:00:29: 47000000 INFO @ Fri, 16 Oct 2020 07:00:30: 58000000 INFO @ Fri, 16 Oct 2020 07:00:34: 54000000 INFO @ Fri, 16 Oct 2020 07:00:35: 48000000 INFO @ Fri, 16 Oct 2020 07:00:37: 59000000 INFO @ Fri, 16 Oct 2020 07:00:41: 55000000 INFO @ Fri, 16 Oct 2020 07:00:42: 49000000 INFO @ Fri, 16 Oct 2020 07:00:43: 60000000 INFO @ Fri, 16 Oct 2020 07:00:48: 56000000 INFO @ Fri, 16 Oct 2020 07:00:49: 50000000 INFO @ Fri, 16 Oct 2020 07:00:50: 61000000 INFO @ Fri, 16 Oct 2020 07:00:54: 57000000 INFO @ Fri, 16 Oct 2020 07:00:55: 51000000 INFO @ Fri, 16 Oct 2020 07:00:56: 62000000 INFO @ Fri, 16 Oct 2020 07:01:01: 58000000 INFO @ Fri, 16 Oct 2020 07:01:01: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:01:01: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:01:01: #1 total tags in treatment: 62694113 INFO @ Fri, 16 Oct 2020 07:01:01: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:01:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:01:02: 52000000 INFO @ Fri, 16 Oct 2020 07:01:02: #1 tags after filtering in treatment: 62694083 INFO @ Fri, 16 Oct 2020 07:01:02: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:01:02: #1 finished! INFO @ Fri, 16 Oct 2020 07:01:02: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:01:02: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:01:07: #2 number of paired peaks: 6155 INFO @ Fri, 16 Oct 2020 07:01:07: start model_add_line... INFO @ Fri, 16 Oct 2020 07:01:07: 59000000 INFO @ Fri, 16 Oct 2020 07:01:08: start X-correlation... INFO @ Fri, 16 Oct 2020 07:01:08: end of X-cor INFO @ Fri, 16 Oct 2020 07:01:08: #2 finished! INFO @ Fri, 16 Oct 2020 07:01:08: #2 predicted fragment length is 49 bps INFO @ Fri, 16 Oct 2020 07:01:08: #2 alternative fragment length(s) may be 49 bps INFO @ Fri, 16 Oct 2020 07:01:08: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.05_model.r WARNING @ Fri, 16 Oct 2020 07:01:08: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:01:08: #2 You may need to consider one of the other alternative d(s): 49 WARNING @ Fri, 16 Oct 2020 07:01:08: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:01:08: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:01:08: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 07:01:08: 53000000 INFO @ Fri, 16 Oct 2020 07:01:13: 60000000 INFO @ Fri, 16 Oct 2020 07:01:14: 54000000 INFO @ Fri, 16 Oct 2020 07:01:19: 61000000 INFO @ Fri, 16 Oct 2020 07:01:20: 55000000 INFO @ Fri, 16 Oct 2020 07:01:26: 62000000 INFO @ Fri, 16 Oct 2020 07:01:27: 56000000 INFO @ Fri, 16 Oct 2020 07:01:31: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:01:31: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:01:31: #1 total tags in treatment: 62694113 INFO @ Fri, 16 Oct 2020 07:01:31: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:01:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:01:32: #1 tags after filtering in treatment: 62694083 INFO @ Fri, 16 Oct 2020 07:01:32: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:01:32: #1 finished! INFO @ Fri, 16 Oct 2020 07:01:32: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:01:32: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:01:33: 57000000 INFO @ Fri, 16 Oct 2020 07:01:37: #2 number of paired peaks: 6155 INFO @ Fri, 16 Oct 2020 07:01:37: start model_add_line... INFO @ Fri, 16 Oct 2020 07:01:37: start X-correlation... INFO @ Fri, 16 Oct 2020 07:01:37: end of X-cor INFO @ Fri, 16 Oct 2020 07:01:37: #2 finished! INFO @ Fri, 16 Oct 2020 07:01:37: #2 predicted fragment length is 49 bps INFO @ Fri, 16 Oct 2020 07:01:37: #2 alternative fragment length(s) may be 49 bps INFO @ Fri, 16 Oct 2020 07:01:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.10_model.r WARNING @ Fri, 16 Oct 2020 07:01:37: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:01:37: #2 You may need to consider one of the other alternative d(s): 49 WARNING @ Fri, 16 Oct 2020 07:01:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:01:37: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:01:37: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 07:01:39: 58000000 INFO @ Fri, 16 Oct 2020 07:01:45: 59000000 INFO @ Fri, 16 Oct 2020 07:01:51: 60000000 INFO @ Fri, 16 Oct 2020 07:01:57: 61000000 INFO @ Fri, 16 Oct 2020 07:02:03: 62000000 INFO @ Fri, 16 Oct 2020 07:02:07: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:02:07: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:02:07: #1 total tags in treatment: 62694113 INFO @ Fri, 16 Oct 2020 07:02:07: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:02:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:02:08: #1 tags after filtering in treatment: 62694083 INFO @ Fri, 16 Oct 2020 07:02:08: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:02:08: #1 finished! INFO @ Fri, 16 Oct 2020 07:02:08: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:02:08: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:02:13: #2 number of paired peaks: 6155 INFO @ Fri, 16 Oct 2020 07:02:13: start model_add_line... INFO @ Fri, 16 Oct 2020 07:02:14: start X-correlation... INFO @ Fri, 16 Oct 2020 07:02:14: end of X-cor INFO @ Fri, 16 Oct 2020 07:02:14: #2 finished! INFO @ Fri, 16 Oct 2020 07:02:14: #2 predicted fragment length is 49 bps INFO @ Fri, 16 Oct 2020 07:02:14: #2 alternative fragment length(s) may be 49 bps INFO @ Fri, 16 Oct 2020 07:02:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.20_model.r WARNING @ Fri, 16 Oct 2020 07:02:14: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:02:14: #2 You may need to consider one of the other alternative d(s): 49 WARNING @ Fri, 16 Oct 2020 07:02:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:02:14: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:02:14: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 07:03:28: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:03:54: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:04:33: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:04:38: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.05_peaks.xls INFO @ Fri, 16 Oct 2020 07:04:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:04:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.05_summits.bed INFO @ Fri, 16 Oct 2020 07:04:38: Done! pass1 - making usageList (76 chroms): 1 millis pass2 - checking and writing primary data (3270 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 07:05:04: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.10_peaks.xls INFO @ Fri, 16 Oct 2020 07:05:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:05:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.10_summits.bed INFO @ Fri, 16 Oct 2020 07:05:04: Done! pass1 - making usageList (57 chroms): 1 millis pass2 - checking and writing primary data (1695 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 07:05:44: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.20_peaks.xls INFO @ Fri, 16 Oct 2020 07:05:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:05:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745139/ERX2745139.20_summits.bed INFO @ Fri, 16 Oct 2020 07:05:44: Done! pass1 - making usageList (44 chroms): 1 millis pass2 - checking and writing primary data (787 records, 4 fields): 5 millis CompletedMACS2peakCalling