Job ID = 10223658 SRX = ERX2745133 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T20:12:14 prefetch.2.10.7: 1) Downloading 'ERR2731908'... 2020-10-15T20:12:14 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T20:14:23 prefetch.2.10.7: HTTPS download succeed 2020-10-15T20:14:23 prefetch.2.10.7: 1) 'ERR2731908' was downloaded successfully Read 95735044 spots for ERR2731908/ERR2731908.sra Written 95735044 spots for ERR2731908/ERR2731908.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:10:55 95735044 reads; of these: 95735044 (100.00%) were unpaired; of these: 2745420 (2.87%) aligned 0 times 64654690 (67.54%) aligned exactly 1 time 28334934 (29.60%) aligned >1 times 97.13% overall alignment rate Time searching: 01:10:58 Overall time: 01:10:58 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 22083325 / 92989624 = 0.2375 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:44:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:44:43: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:44:43: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:44:47: 1000000 INFO @ Fri, 16 Oct 2020 06:44:52: 2000000 INFO @ Fri, 16 Oct 2020 06:44:58: 3000000 INFO @ Fri, 16 Oct 2020 06:45:03: 4000000 INFO @ Fri, 16 Oct 2020 06:45:08: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:45:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:45:13: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:45:13: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:45:13: 6000000 INFO @ Fri, 16 Oct 2020 06:45:19: 7000000 INFO @ Fri, 16 Oct 2020 06:45:19: 1000000 INFO @ Fri, 16 Oct 2020 06:45:24: 8000000 INFO @ Fri, 16 Oct 2020 06:45:25: 2000000 INFO @ Fri, 16 Oct 2020 06:45:30: 9000000 INFO @ Fri, 16 Oct 2020 06:45:31: 3000000 INFO @ Fri, 16 Oct 2020 06:45:35: 10000000 INFO @ Fri, 16 Oct 2020 06:45:37: 4000000 INFO @ Fri, 16 Oct 2020 06:45:41: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:45:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:45:43: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:45:43: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:45:43: 5000000 INFO @ Fri, 16 Oct 2020 06:45:46: 12000000 INFO @ Fri, 16 Oct 2020 06:45:48: 1000000 INFO @ Fri, 16 Oct 2020 06:45:49: 6000000 INFO @ Fri, 16 Oct 2020 06:45:52: 13000000 INFO @ Fri, 16 Oct 2020 06:45:54: 2000000 INFO @ Fri, 16 Oct 2020 06:45:56: 7000000 INFO @ Fri, 16 Oct 2020 06:45:58: 14000000 INFO @ Fri, 16 Oct 2020 06:46:00: 3000000 INFO @ Fri, 16 Oct 2020 06:46:02: 8000000 INFO @ Fri, 16 Oct 2020 06:46:04: 15000000 INFO @ Fri, 16 Oct 2020 06:46:06: 4000000 INFO @ Fri, 16 Oct 2020 06:46:08: 9000000 INFO @ Fri, 16 Oct 2020 06:46:09: 16000000 INFO @ Fri, 16 Oct 2020 06:46:11: 5000000 INFO @ Fri, 16 Oct 2020 06:46:14: 10000000 INFO @ Fri, 16 Oct 2020 06:46:15: 17000000 INFO @ Fri, 16 Oct 2020 06:46:17: 6000000 INFO @ Fri, 16 Oct 2020 06:46:20: 11000000 INFO @ Fri, 16 Oct 2020 06:46:21: 18000000 INFO @ Fri, 16 Oct 2020 06:46:23: 7000000 INFO @ Fri, 16 Oct 2020 06:46:26: 12000000 INFO @ Fri, 16 Oct 2020 06:46:26: 19000000 INFO @ Fri, 16 Oct 2020 06:46:28: 8000000 INFO @ Fri, 16 Oct 2020 06:46:32: 20000000 INFO @ Fri, 16 Oct 2020 06:46:32: 13000000 INFO @ Fri, 16 Oct 2020 06:46:34: 9000000 INFO @ Fri, 16 Oct 2020 06:46:38: 21000000 INFO @ Fri, 16 Oct 2020 06:46:39: 14000000 INFO @ Fri, 16 Oct 2020 06:46:40: 10000000 INFO @ Fri, 16 Oct 2020 06:46:43: 22000000 INFO @ Fri, 16 Oct 2020 06:46:45: 15000000 INFO @ Fri, 16 Oct 2020 06:46:45: 11000000 INFO @ Fri, 16 Oct 2020 06:46:49: 23000000 INFO @ Fri, 16 Oct 2020 06:46:51: 16000000 INFO @ Fri, 16 Oct 2020 06:46:51: 12000000 INFO @ Fri, 16 Oct 2020 06:46:55: 24000000 INFO @ Fri, 16 Oct 2020 06:46:57: 13000000 INFO @ Fri, 16 Oct 2020 06:46:57: 17000000 INFO @ Fri, 16 Oct 2020 06:47:00: 25000000 INFO @ Fri, 16 Oct 2020 06:47:02: 14000000 INFO @ Fri, 16 Oct 2020 06:47:03: 18000000 INFO @ Fri, 16 Oct 2020 06:47:06: 26000000 INFO @ Fri, 16 Oct 2020 06:47:08: 15000000 INFO @ Fri, 16 Oct 2020 06:47:09: 19000000 INFO @ Fri, 16 Oct 2020 06:47:12: 27000000 INFO @ Fri, 16 Oct 2020 06:47:14: 16000000 INFO @ Fri, 16 Oct 2020 06:47:15: 20000000 INFO @ Fri, 16 Oct 2020 06:47:18: 28000000 INFO @ Fri, 16 Oct 2020 06:47:20: 17000000 INFO @ Fri, 16 Oct 2020 06:47:22: 21000000 INFO @ Fri, 16 Oct 2020 06:47:23: 29000000 INFO @ Fri, 16 Oct 2020 06:47:25: 18000000 INFO @ Fri, 16 Oct 2020 06:47:28: 22000000 INFO @ Fri, 16 Oct 2020 06:47:29: 30000000 INFO @ Fri, 16 Oct 2020 06:47:31: 19000000 INFO @ Fri, 16 Oct 2020 06:47:34: 23000000 INFO @ Fri, 16 Oct 2020 06:47:35: 31000000 INFO @ Fri, 16 Oct 2020 06:47:37: 20000000 INFO @ Fri, 16 Oct 2020 06:47:40: 24000000 INFO @ Fri, 16 Oct 2020 06:47:40: 32000000 INFO @ Fri, 16 Oct 2020 06:47:42: 21000000 INFO @ Fri, 16 Oct 2020 06:47:46: 33000000 INFO @ Fri, 16 Oct 2020 06:47:46: 25000000 INFO @ Fri, 16 Oct 2020 06:47:48: 22000000 INFO @ Fri, 16 Oct 2020 06:47:52: 34000000 INFO @ Fri, 16 Oct 2020 06:47:52: 26000000 INFO @ Fri, 16 Oct 2020 06:47:54: 23000000 INFO @ Fri, 16 Oct 2020 06:47:57: 35000000 INFO @ Fri, 16 Oct 2020 06:47:58: 27000000 INFO @ Fri, 16 Oct 2020 06:47:59: 24000000 INFO @ Fri, 16 Oct 2020 06:48:03: 36000000 INFO @ Fri, 16 Oct 2020 06:48:05: 28000000 INFO @ Fri, 16 Oct 2020 06:48:05: 25000000 INFO @ Fri, 16 Oct 2020 06:48:09: 37000000 INFO @ Fri, 16 Oct 2020 06:48:11: 29000000 INFO @ Fri, 16 Oct 2020 06:48:11: 26000000 INFO @ Fri, 16 Oct 2020 06:48:15: 38000000 INFO @ Fri, 16 Oct 2020 06:48:16: 27000000 INFO @ Fri, 16 Oct 2020 06:48:17: 30000000 INFO @ Fri, 16 Oct 2020 06:48:20: 39000000 INFO @ Fri, 16 Oct 2020 06:48:22: 28000000 INFO @ Fri, 16 Oct 2020 06:48:23: 31000000 INFO @ Fri, 16 Oct 2020 06:48:26: 40000000 INFO @ Fri, 16 Oct 2020 06:48:28: 29000000 INFO @ Fri, 16 Oct 2020 06:48:29: 32000000 INFO @ Fri, 16 Oct 2020 06:48:32: 41000000 INFO @ Fri, 16 Oct 2020 06:48:34: 30000000 INFO @ Fri, 16 Oct 2020 06:48:35: 33000000 INFO @ Fri, 16 Oct 2020 06:48:37: 42000000 INFO @ Fri, 16 Oct 2020 06:48:39: 31000000 INFO @ Fri, 16 Oct 2020 06:48:41: 34000000 INFO @ Fri, 16 Oct 2020 06:48:43: 43000000 INFO @ Fri, 16 Oct 2020 06:48:45: 32000000 INFO @ Fri, 16 Oct 2020 06:48:48: 35000000 INFO @ Fri, 16 Oct 2020 06:48:49: 44000000 INFO @ Fri, 16 Oct 2020 06:48:51: 33000000 INFO @ Fri, 16 Oct 2020 06:48:54: 36000000 INFO @ Fri, 16 Oct 2020 06:48:54: 45000000 INFO @ Fri, 16 Oct 2020 06:48:56: 34000000 INFO @ Fri, 16 Oct 2020 06:49:00: 37000000 INFO @ Fri, 16 Oct 2020 06:49:00: 46000000 INFO @ Fri, 16 Oct 2020 06:49:02: 35000000 INFO @ Fri, 16 Oct 2020 06:49:06: 47000000 INFO @ Fri, 16 Oct 2020 06:49:06: 38000000 INFO @ Fri, 16 Oct 2020 06:49:08: 36000000 INFO @ Fri, 16 Oct 2020 06:49:11: 48000000 INFO @ Fri, 16 Oct 2020 06:49:12: 39000000 INFO @ Fri, 16 Oct 2020 06:49:13: 37000000 INFO @ Fri, 16 Oct 2020 06:49:17: 49000000 INFO @ Fri, 16 Oct 2020 06:49:19: 40000000 INFO @ Fri, 16 Oct 2020 06:49:19: 38000000 INFO @ Fri, 16 Oct 2020 06:49:23: 50000000 INFO @ Fri, 16 Oct 2020 06:49:25: 39000000 INFO @ Fri, 16 Oct 2020 06:49:25: 41000000 INFO @ Fri, 16 Oct 2020 06:49:29: 51000000 INFO @ Fri, 16 Oct 2020 06:49:31: 40000000 INFO @ Fri, 16 Oct 2020 06:49:32: 42000000 INFO @ Fri, 16 Oct 2020 06:49:34: 52000000 INFO @ Fri, 16 Oct 2020 06:49:36: 41000000 INFO @ Fri, 16 Oct 2020 06:49:38: 43000000 INFO @ Fri, 16 Oct 2020 06:49:40: 53000000 INFO @ Fri, 16 Oct 2020 06:49:42: 42000000 INFO @ Fri, 16 Oct 2020 06:49:44: 44000000 INFO @ Fri, 16 Oct 2020 06:49:46: 54000000 INFO @ Fri, 16 Oct 2020 06:49:48: 43000000 INFO @ Fri, 16 Oct 2020 06:49:51: 45000000 INFO @ Fri, 16 Oct 2020 06:49:51: 55000000 INFO @ Fri, 16 Oct 2020 06:49:54: 44000000 INFO @ Fri, 16 Oct 2020 06:49:57: 56000000 INFO @ Fri, 16 Oct 2020 06:49:57: 46000000 INFO @ Fri, 16 Oct 2020 06:49:59: 45000000 INFO @ Fri, 16 Oct 2020 06:50:03: 57000000 INFO @ Fri, 16 Oct 2020 06:50:04: 47000000 INFO @ Fri, 16 Oct 2020 06:50:05: 46000000 INFO @ Fri, 16 Oct 2020 06:50:09: 58000000 INFO @ Fri, 16 Oct 2020 06:50:10: 48000000 INFO @ Fri, 16 Oct 2020 06:50:11: 47000000 INFO @ Fri, 16 Oct 2020 06:50:14: 59000000 INFO @ Fri, 16 Oct 2020 06:50:16: 48000000 INFO @ Fri, 16 Oct 2020 06:50:17: 49000000 INFO @ Fri, 16 Oct 2020 06:50:20: 60000000 INFO @ Fri, 16 Oct 2020 06:50:22: 49000000 INFO @ Fri, 16 Oct 2020 06:50:23: 50000000 INFO @ Fri, 16 Oct 2020 06:50:26: 61000000 INFO @ Fri, 16 Oct 2020 06:50:28: 50000000 INFO @ Fri, 16 Oct 2020 06:50:30: 51000000 INFO @ Fri, 16 Oct 2020 06:50:31: 62000000 INFO @ Fri, 16 Oct 2020 06:50:34: 51000000 INFO @ Fri, 16 Oct 2020 06:50:36: 52000000 INFO @ Fri, 16 Oct 2020 06:50:37: 63000000 INFO @ Fri, 16 Oct 2020 06:50:39: 52000000 INFO @ Fri, 16 Oct 2020 06:50:42: 53000000 INFO @ Fri, 16 Oct 2020 06:50:43: 64000000 INFO @ Fri, 16 Oct 2020 06:50:45: 53000000 INFO @ Fri, 16 Oct 2020 06:50:49: 65000000 INFO @ Fri, 16 Oct 2020 06:50:49: 54000000 INFO @ Fri, 16 Oct 2020 06:50:51: 54000000 INFO @ Fri, 16 Oct 2020 06:50:54: 66000000 INFO @ Fri, 16 Oct 2020 06:50:55: 55000000 INFO @ Fri, 16 Oct 2020 06:50:57: 55000000 INFO @ Fri, 16 Oct 2020 06:51:00: 67000000 INFO @ Fri, 16 Oct 2020 06:51:02: 56000000 INFO @ Fri, 16 Oct 2020 06:51:03: 56000000 INFO @ Fri, 16 Oct 2020 06:51:06: 68000000 INFO @ Fri, 16 Oct 2020 06:51:08: 57000000 INFO @ Fri, 16 Oct 2020 06:51:09: 57000000 INFO @ Fri, 16 Oct 2020 06:51:12: 69000000 INFO @ Fri, 16 Oct 2020 06:51:15: 58000000 INFO @ Fri, 16 Oct 2020 06:51:15: 58000000 INFO @ Fri, 16 Oct 2020 06:51:17: 70000000 INFO @ Fri, 16 Oct 2020 06:51:21: 59000000 INFO @ Fri, 16 Oct 2020 06:51:22: 59000000 INFO @ Fri, 16 Oct 2020 06:51:23: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:51:23: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:51:23: #1 total tags in treatment: 70906299 INFO @ Fri, 16 Oct 2020 06:51:23: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:51:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:51:24: #1 tags after filtering in treatment: 70906274 INFO @ Fri, 16 Oct 2020 06:51:24: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:51:24: #1 finished! INFO @ Fri, 16 Oct 2020 06:51:24: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:51:24: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:51:27: 60000000 INFO @ Fri, 16 Oct 2020 06:51:28: 60000000 INFO @ Fri, 16 Oct 2020 06:51:30: #2 number of paired peaks: 6745 INFO @ Fri, 16 Oct 2020 06:51:30: start model_add_line... INFO @ Fri, 16 Oct 2020 06:51:30: start X-correlation... INFO @ Fri, 16 Oct 2020 06:51:30: end of X-cor INFO @ Fri, 16 Oct 2020 06:51:30: #2 finished! INFO @ Fri, 16 Oct 2020 06:51:30: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 06:51:30: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 06:51:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.05_model.r WARNING @ Fri, 16 Oct 2020 06:51:30: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 06:51:30: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 06:51:30: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 06:51:30: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:51:30: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:51:34: 61000000 INFO @ Fri, 16 Oct 2020 06:51:35: 61000000 INFO @ Fri, 16 Oct 2020 06:51:40: 62000000 INFO @ Fri, 16 Oct 2020 06:51:41: 62000000 INFO @ Fri, 16 Oct 2020 06:51:47: 63000000 INFO @ Fri, 16 Oct 2020 06:51:48: 63000000 INFO @ Fri, 16 Oct 2020 06:51:53: 64000000 INFO @ Fri, 16 Oct 2020 06:51:54: 64000000 INFO @ Fri, 16 Oct 2020 06:52:00: 65000000 INFO @ Fri, 16 Oct 2020 06:52:00: 65000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 06:52:06: 66000000 INFO @ Fri, 16 Oct 2020 06:52:07: 66000000 INFO @ Fri, 16 Oct 2020 06:52:13: 67000000 INFO @ Fri, 16 Oct 2020 06:52:13: 67000000 INFO @ Fri, 16 Oct 2020 06:52:19: 68000000 INFO @ Fri, 16 Oct 2020 06:52:20: 68000000 INFO @ Fri, 16 Oct 2020 06:52:25: 69000000 INFO @ Fri, 16 Oct 2020 06:52:26: 69000000 INFO @ Fri, 16 Oct 2020 06:52:32: 70000000 INFO @ Fri, 16 Oct 2020 06:52:33: 70000000 INFO @ Fri, 16 Oct 2020 06:52:38: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:52:38: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:52:38: #1 total tags in treatment: 70906299 INFO @ Fri, 16 Oct 2020 06:52:38: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:52:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:52:39: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:52:39: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:52:39: #1 total tags in treatment: 70906299 INFO @ Fri, 16 Oct 2020 06:52:39: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:52:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:52:39: #1 tags after filtering in treatment: 70906274 INFO @ Fri, 16 Oct 2020 06:52:39: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:52:39: #1 finished! INFO @ Fri, 16 Oct 2020 06:52:39: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:52:39: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:52:40: #1 tags after filtering in treatment: 70906274 INFO @ Fri, 16 Oct 2020 06:52:40: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:52:40: #1 finished! INFO @ Fri, 16 Oct 2020 06:52:40: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:52:40: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:52:45: #2 number of paired peaks: 6745 INFO @ Fri, 16 Oct 2020 06:52:45: start model_add_line... INFO @ Fri, 16 Oct 2020 06:52:45: start X-correlation... INFO @ Fri, 16 Oct 2020 06:52:45: end of X-cor INFO @ Fri, 16 Oct 2020 06:52:45: #2 finished! INFO @ Fri, 16 Oct 2020 06:52:45: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 06:52:45: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 06:52:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.10_model.r WARNING @ Fri, 16 Oct 2020 06:52:45: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 06:52:45: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 06:52:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 06:52:45: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:52:45: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:52:46: #2 number of paired peaks: 6745 INFO @ Fri, 16 Oct 2020 06:52:46: start model_add_line... INFO @ Fri, 16 Oct 2020 06:52:46: start X-correlation... INFO @ Fri, 16 Oct 2020 06:52:46: end of X-cor INFO @ Fri, 16 Oct 2020 06:52:46: #2 finished! INFO @ Fri, 16 Oct 2020 06:52:46: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 06:52:46: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 06:52:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.20_model.r WARNING @ Fri, 16 Oct 2020 06:52:46: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 06:52:46: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 06:52:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 06:52:46: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:52:46: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:54:08: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 06:55:21: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:55:22: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:55:31: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.05_peaks.xls INFO @ Fri, 16 Oct 2020 06:55:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:55:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.05_summits.bed INFO @ Fri, 16 Oct 2020 06:55:31: Done! pass1 - making usageList (80 chroms): 1 millis pass2 - checking and writing primary data (3794 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:56:42: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.10_peaks.xls INFO @ Fri, 16 Oct 2020 06:56:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:56:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.10_summits.bed INFO @ Fri, 16 Oct 2020 06:56:42: Done! pass1 - making usageList (63 chroms): 1 millis pass2 - checking and writing primary data (1970 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:56:44: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.20_peaks.xls INFO @ Fri, 16 Oct 2020 06:56:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:56:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745133/ERX2745133.20_summits.bed INFO @ Fri, 16 Oct 2020 06:56:44: Done! pass1 - making usageList (43 chroms): 1 millis pass2 - checking and writing primary data (843 records, 4 fields): 4 millis CompletedMACS2peakCalling