Job ID = 10223657 SRX = ERX2745132 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T20:11:44 prefetch.2.10.7: 1) Downloading 'ERR2731907'... 2020-10-15T20:11:44 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T20:13:45 prefetch.2.10.7: HTTPS download succeed 2020-10-15T20:13:45 prefetch.2.10.7: 1) 'ERR2731907' was downloaded successfully Read 96723773 spots for ERR2731907/ERR2731907.sra Written 96723773 spots for ERR2731907/ERR2731907.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:03 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:17:21 96723773 reads; of these: 96723773 (100.00%) were unpaired; of these: 2654026 (2.74%) aligned 0 times 65519674 (67.74%) aligned exactly 1 time 28550073 (29.52%) aligned >1 times 97.26% overall alignment rate Time searching: 01:17:26 Overall time: 01:17:26 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 24068852 / 94069747 = 0.2559 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:50:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:50:58: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:50:58: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:51:03: 1000000 INFO @ Fri, 16 Oct 2020 06:51:07: 2000000 INFO @ Fri, 16 Oct 2020 06:51:12: 3000000 INFO @ Fri, 16 Oct 2020 06:51:17: 4000000 INFO @ Fri, 16 Oct 2020 06:51:21: 5000000 INFO @ Fri, 16 Oct 2020 06:51:26: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:51:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:51:28: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:51:28: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:51:31: 7000000 INFO @ Fri, 16 Oct 2020 06:51:32: 1000000 INFO @ Fri, 16 Oct 2020 06:51:35: 8000000 INFO @ Fri, 16 Oct 2020 06:51:37: 2000000 INFO @ Fri, 16 Oct 2020 06:51:40: 9000000 INFO @ Fri, 16 Oct 2020 06:51:42: 3000000 INFO @ Fri, 16 Oct 2020 06:51:45: 10000000 INFO @ Fri, 16 Oct 2020 06:51:47: 4000000 INFO @ Fri, 16 Oct 2020 06:51:50: 11000000 INFO @ Fri, 16 Oct 2020 06:51:52: 5000000 INFO @ Fri, 16 Oct 2020 06:51:55: 12000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:51:57: 6000000 INFO @ Fri, 16 Oct 2020 06:51:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:51:58: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:51:58: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:51:59: 13000000 INFO @ Fri, 16 Oct 2020 06:52:02: 7000000 INFO @ Fri, 16 Oct 2020 06:52:02: 1000000 INFO @ Fri, 16 Oct 2020 06:52:04: 14000000 INFO @ Fri, 16 Oct 2020 06:52:06: 8000000 INFO @ Fri, 16 Oct 2020 06:52:07: 2000000 INFO @ Fri, 16 Oct 2020 06:52:09: 15000000 INFO @ Fri, 16 Oct 2020 06:52:11: 9000000 INFO @ Fri, 16 Oct 2020 06:52:12: 3000000 INFO @ Fri, 16 Oct 2020 06:52:14: 16000000 INFO @ Fri, 16 Oct 2020 06:52:16: 10000000 INFO @ Fri, 16 Oct 2020 06:52:17: 4000000 INFO @ Fri, 16 Oct 2020 06:52:19: 17000000 INFO @ Fri, 16 Oct 2020 06:52:21: 11000000 INFO @ Fri, 16 Oct 2020 06:52:22: 5000000 INFO @ Fri, 16 Oct 2020 06:52:23: 18000000 INFO @ Fri, 16 Oct 2020 06:52:26: 12000000 INFO @ Fri, 16 Oct 2020 06:52:27: 6000000 INFO @ Fri, 16 Oct 2020 06:52:28: 19000000 INFO @ Fri, 16 Oct 2020 06:52:30: 13000000 INFO @ Fri, 16 Oct 2020 06:52:32: 7000000 INFO @ Fri, 16 Oct 2020 06:52:33: 20000000 INFO @ Fri, 16 Oct 2020 06:52:35: 14000000 INFO @ Fri, 16 Oct 2020 06:52:37: 8000000 INFO @ Fri, 16 Oct 2020 06:52:38: 21000000 INFO @ Fri, 16 Oct 2020 06:52:40: 15000000 INFO @ Fri, 16 Oct 2020 06:52:42: 9000000 INFO @ Fri, 16 Oct 2020 06:52:42: 22000000 INFO @ Fri, 16 Oct 2020 06:52:45: 16000000 INFO @ Fri, 16 Oct 2020 06:52:47: 10000000 INFO @ Fri, 16 Oct 2020 06:52:47: 23000000 INFO @ Fri, 16 Oct 2020 06:52:50: 17000000 INFO @ Fri, 16 Oct 2020 06:52:51: 11000000 INFO @ Fri, 16 Oct 2020 06:52:52: 24000000 INFO @ Fri, 16 Oct 2020 06:52:54: 18000000 INFO @ Fri, 16 Oct 2020 06:52:56: 12000000 INFO @ Fri, 16 Oct 2020 06:52:57: 25000000 INFO @ Fri, 16 Oct 2020 06:52:59: 19000000 INFO @ Fri, 16 Oct 2020 06:53:01: 13000000 INFO @ Fri, 16 Oct 2020 06:53:01: 26000000 INFO @ Fri, 16 Oct 2020 06:53:04: 20000000 INFO @ Fri, 16 Oct 2020 06:53:06: 14000000 INFO @ Fri, 16 Oct 2020 06:53:06: 27000000 INFO @ Fri, 16 Oct 2020 06:53:09: 21000000 INFO @ Fri, 16 Oct 2020 06:53:11: 15000000 INFO @ Fri, 16 Oct 2020 06:53:11: 28000000 INFO @ Fri, 16 Oct 2020 06:53:13: 22000000 INFO @ Fri, 16 Oct 2020 06:53:16: 16000000 INFO @ Fri, 16 Oct 2020 06:53:16: 29000000 INFO @ Fri, 16 Oct 2020 06:53:18: 23000000 INFO @ Fri, 16 Oct 2020 06:53:20: 17000000 INFO @ Fri, 16 Oct 2020 06:53:20: 30000000 INFO @ Fri, 16 Oct 2020 06:53:23: 24000000 INFO @ Fri, 16 Oct 2020 06:53:25: 18000000 INFO @ Fri, 16 Oct 2020 06:53:25: 31000000 INFO @ Fri, 16 Oct 2020 06:53:28: 25000000 INFO @ Fri, 16 Oct 2020 06:53:30: 19000000 INFO @ Fri, 16 Oct 2020 06:53:30: 32000000 INFO @ Fri, 16 Oct 2020 06:53:32: 26000000 INFO @ Fri, 16 Oct 2020 06:53:35: 33000000 INFO @ Fri, 16 Oct 2020 06:53:35: 20000000 INFO @ Fri, 16 Oct 2020 06:53:37: 27000000 INFO @ Fri, 16 Oct 2020 06:53:40: 34000000 INFO @ Fri, 16 Oct 2020 06:53:40: 21000000 INFO @ Fri, 16 Oct 2020 06:53:42: 28000000 INFO @ Fri, 16 Oct 2020 06:53:44: 35000000 INFO @ Fri, 16 Oct 2020 06:53:44: 22000000 INFO @ Fri, 16 Oct 2020 06:53:47: 29000000 INFO @ Fri, 16 Oct 2020 06:53:49: 23000000 INFO @ Fri, 16 Oct 2020 06:53:49: 36000000 INFO @ Fri, 16 Oct 2020 06:53:51: 30000000 INFO @ Fri, 16 Oct 2020 06:53:54: 24000000 INFO @ Fri, 16 Oct 2020 06:53:54: 37000000 INFO @ Fri, 16 Oct 2020 06:53:56: 31000000 INFO @ Fri, 16 Oct 2020 06:53:59: 25000000 INFO @ Fri, 16 Oct 2020 06:53:59: 38000000 INFO @ Fri, 16 Oct 2020 06:54:01: 32000000 INFO @ Fri, 16 Oct 2020 06:54:03: 26000000 INFO @ Fri, 16 Oct 2020 06:54:04: 39000000 INFO @ Fri, 16 Oct 2020 06:54:06: 33000000 INFO @ Fri, 16 Oct 2020 06:54:08: 27000000 INFO @ Fri, 16 Oct 2020 06:54:09: 40000000 INFO @ Fri, 16 Oct 2020 06:54:10: 34000000 INFO @ Fri, 16 Oct 2020 06:54:13: 28000000 INFO @ Fri, 16 Oct 2020 06:54:14: 41000000 INFO @ Fri, 16 Oct 2020 06:54:15: 35000000 INFO @ Fri, 16 Oct 2020 06:54:18: 29000000 INFO @ Fri, 16 Oct 2020 06:54:18: 42000000 INFO @ Fri, 16 Oct 2020 06:54:20: 36000000 INFO @ Fri, 16 Oct 2020 06:54:22: 30000000 INFO @ Fri, 16 Oct 2020 06:54:23: 43000000 INFO @ Fri, 16 Oct 2020 06:54:25: 37000000 INFO @ Fri, 16 Oct 2020 06:54:27: 31000000 INFO @ Fri, 16 Oct 2020 06:54:28: 44000000 INFO @ Fri, 16 Oct 2020 06:54:30: 38000000 INFO @ Fri, 16 Oct 2020 06:54:32: 32000000 INFO @ Fri, 16 Oct 2020 06:54:33: 45000000 INFO @ Fri, 16 Oct 2020 06:54:34: 39000000 INFO @ Fri, 16 Oct 2020 06:54:37: 33000000 INFO @ Fri, 16 Oct 2020 06:54:38: 46000000 INFO @ Fri, 16 Oct 2020 06:54:39: 40000000 INFO @ Fri, 16 Oct 2020 06:54:42: 34000000 INFO @ Fri, 16 Oct 2020 06:54:43: 47000000 INFO @ Fri, 16 Oct 2020 06:54:44: 41000000 INFO @ Fri, 16 Oct 2020 06:54:46: 35000000 INFO @ Fri, 16 Oct 2020 06:54:48: 48000000 INFO @ Fri, 16 Oct 2020 06:54:49: 42000000 INFO @ Fri, 16 Oct 2020 06:54:51: 36000000 INFO @ Fri, 16 Oct 2020 06:54:53: 49000000 INFO @ Fri, 16 Oct 2020 06:54:54: 43000000 INFO @ Fri, 16 Oct 2020 06:54:56: 37000000 INFO @ Fri, 16 Oct 2020 06:54:58: 50000000 INFO @ Fri, 16 Oct 2020 06:54:59: 44000000 INFO @ Fri, 16 Oct 2020 06:55:01: 38000000 INFO @ Fri, 16 Oct 2020 06:55:03: 51000000 INFO @ Fri, 16 Oct 2020 06:55:04: 45000000 INFO @ Fri, 16 Oct 2020 06:55:06: 39000000 INFO @ Fri, 16 Oct 2020 06:55:07: 52000000 INFO @ Fri, 16 Oct 2020 06:55:09: 46000000 INFO @ Fri, 16 Oct 2020 06:55:11: 40000000 INFO @ Fri, 16 Oct 2020 06:55:12: 53000000 INFO @ Fri, 16 Oct 2020 06:55:14: 47000000 INFO @ Fri, 16 Oct 2020 06:55:16: 41000000 INFO @ Fri, 16 Oct 2020 06:55:17: 54000000 INFO @ Fri, 16 Oct 2020 06:55:18: 48000000 INFO @ Fri, 16 Oct 2020 06:55:21: 42000000 INFO @ Fri, 16 Oct 2020 06:55:22: 55000000 INFO @ Fri, 16 Oct 2020 06:55:23: 49000000 INFO @ Fri, 16 Oct 2020 06:55:26: 43000000 INFO @ Fri, 16 Oct 2020 06:55:27: 56000000 INFO @ Fri, 16 Oct 2020 06:55:28: 50000000 INFO @ Fri, 16 Oct 2020 06:55:30: 44000000 INFO @ Fri, 16 Oct 2020 06:55:32: 57000000 INFO @ Fri, 16 Oct 2020 06:55:33: 51000000 INFO @ Fri, 16 Oct 2020 06:55:35: 45000000 INFO @ Fri, 16 Oct 2020 06:55:37: 58000000 INFO @ Fri, 16 Oct 2020 06:55:38: 52000000 INFO @ Fri, 16 Oct 2020 06:55:40: 46000000 INFO @ Fri, 16 Oct 2020 06:55:42: 59000000 INFO @ Fri, 16 Oct 2020 06:55:43: 53000000 INFO @ Fri, 16 Oct 2020 06:55:45: 47000000 INFO @ Fri, 16 Oct 2020 06:55:47: 60000000 INFO @ Fri, 16 Oct 2020 06:55:48: 54000000 INFO @ Fri, 16 Oct 2020 06:55:50: 48000000 INFO @ Fri, 16 Oct 2020 06:55:52: 61000000 INFO @ Fri, 16 Oct 2020 06:55:53: 55000000 INFO @ Fri, 16 Oct 2020 06:55:55: 49000000 INFO @ Fri, 16 Oct 2020 06:55:57: 62000000 INFO @ Fri, 16 Oct 2020 06:55:58: 56000000 INFO @ Fri, 16 Oct 2020 06:56:00: 50000000 INFO @ Fri, 16 Oct 2020 06:56:02: 63000000 INFO @ Fri, 16 Oct 2020 06:56:02: 57000000 INFO @ Fri, 16 Oct 2020 06:56:05: 51000000 INFO @ Fri, 16 Oct 2020 06:56:07: 64000000 INFO @ Fri, 16 Oct 2020 06:56:07: 58000000 INFO @ Fri, 16 Oct 2020 06:56:10: 52000000 INFO @ Fri, 16 Oct 2020 06:56:11: 65000000 INFO @ Fri, 16 Oct 2020 06:56:12: 59000000 INFO @ Fri, 16 Oct 2020 06:56:15: 53000000 INFO @ Fri, 16 Oct 2020 06:56:17: 66000000 INFO @ Fri, 16 Oct 2020 06:56:17: 60000000 INFO @ Fri, 16 Oct 2020 06:56:20: 54000000 INFO @ Fri, 16 Oct 2020 06:56:21: 67000000 INFO @ Fri, 16 Oct 2020 06:56:22: 61000000 INFO @ Fri, 16 Oct 2020 06:56:25: 55000000 INFO @ Fri, 16 Oct 2020 06:56:26: 68000000 INFO @ Fri, 16 Oct 2020 06:56:27: 62000000 INFO @ Fri, 16 Oct 2020 06:56:30: 56000000 INFO @ Fri, 16 Oct 2020 06:56:31: 69000000 INFO @ Fri, 16 Oct 2020 06:56:32: 63000000 INFO @ Fri, 16 Oct 2020 06:56:35: 57000000 INFO @ Fri, 16 Oct 2020 06:56:36: 70000000 INFO @ Fri, 16 Oct 2020 06:56:37: 64000000 INFO @ Fri, 16 Oct 2020 06:56:37: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:56:37: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:56:37: #1 total tags in treatment: 70000895 INFO @ Fri, 16 Oct 2020 06:56:37: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:56:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:56:38: #1 tags after filtering in treatment: 70000874 INFO @ Fri, 16 Oct 2020 06:56:38: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:56:38: #1 finished! INFO @ Fri, 16 Oct 2020 06:56:38: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:56:38: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:56:39: 58000000 INFO @ Fri, 16 Oct 2020 06:56:42: 65000000 INFO @ Fri, 16 Oct 2020 06:56:43: #2 number of paired peaks: 6704 INFO @ Fri, 16 Oct 2020 06:56:43: start model_add_line... INFO @ Fri, 16 Oct 2020 06:56:44: start X-correlation... INFO @ Fri, 16 Oct 2020 06:56:44: end of X-cor INFO @ Fri, 16 Oct 2020 06:56:44: #2 finished! INFO @ Fri, 16 Oct 2020 06:56:44: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 06:56:44: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 06:56:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.05_model.r WARNING @ Fri, 16 Oct 2020 06:56:44: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 06:56:44: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 06:56:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 06:56:44: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:56:44: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:56:44: 59000000 INFO @ Fri, 16 Oct 2020 06:56:47: 66000000 INFO @ Fri, 16 Oct 2020 06:56:49: 60000000 INFO @ Fri, 16 Oct 2020 06:56:52: 67000000 INFO @ Fri, 16 Oct 2020 06:56:54: 61000000 INFO @ Fri, 16 Oct 2020 06:56:57: 68000000 INFO @ Fri, 16 Oct 2020 06:56:59: 62000000 INFO @ Fri, 16 Oct 2020 06:57:02: 69000000 INFO @ Fri, 16 Oct 2020 06:57:04: 63000000 INFO @ Fri, 16 Oct 2020 06:57:06: 70000000 INFO @ Fri, 16 Oct 2020 06:57:07: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:57:07: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:57:07: #1 total tags in treatment: 70000895 INFO @ Fri, 16 Oct 2020 06:57:07: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:57:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:57:08: #1 tags after filtering in treatment: 70000874 INFO @ Fri, 16 Oct 2020 06:57:08: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:57:08: #1 finished! INFO @ Fri, 16 Oct 2020 06:57:08: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:57:08: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:57:09: 64000000 INFO @ Fri, 16 Oct 2020 06:57:14: #2 number of paired peaks: 6704 INFO @ Fri, 16 Oct 2020 06:57:14: start model_add_line... INFO @ Fri, 16 Oct 2020 06:57:14: 65000000 INFO @ Fri, 16 Oct 2020 06:57:14: start X-correlation... INFO @ Fri, 16 Oct 2020 06:57:14: end of X-cor INFO @ Fri, 16 Oct 2020 06:57:14: #2 finished! INFO @ Fri, 16 Oct 2020 06:57:14: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 06:57:14: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 06:57:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.10_model.r WARNING @ Fri, 16 Oct 2020 06:57:14: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 06:57:14: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 06:57:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 06:57:14: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:57:14: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:57:19: 66000000 INFO @ Fri, 16 Oct 2020 06:57:23: 67000000 INFO @ Fri, 16 Oct 2020 06:57:28: 68000000 INFO @ Fri, 16 Oct 2020 06:57:33: 69000000 INFO @ Fri, 16 Oct 2020 06:57:38: 70000000 INFO @ Fri, 16 Oct 2020 06:57:38: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:57:38: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:57:38: #1 total tags in treatment: 70000895 INFO @ Fri, 16 Oct 2020 06:57:38: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:57:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:57:40: #1 tags after filtering in treatment: 70000874 INFO @ Fri, 16 Oct 2020 06:57:40: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:57:40: #1 finished! INFO @ Fri, 16 Oct 2020 06:57:40: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:57:40: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:57:45: #2 number of paired peaks: 6704 INFO @ Fri, 16 Oct 2020 06:57:45: start model_add_line... INFO @ Fri, 16 Oct 2020 06:57:45: start X-correlation... INFO @ Fri, 16 Oct 2020 06:57:45: end of X-cor INFO @ Fri, 16 Oct 2020 06:57:45: #2 finished! INFO @ Fri, 16 Oct 2020 06:57:45: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 06:57:45: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 06:57:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.20_model.r WARNING @ Fri, 16 Oct 2020 06:57:45: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 06:57:45: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 06:57:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 06:57:45: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:57:45: #3 Pre-compute pvalue-qvalue table... BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 06:59:22: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:59:46: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:00:23: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:00:45: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.05_peaks.xls INFO @ Fri, 16 Oct 2020 07:00:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:00:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.05_summits.bed INFO @ Fri, 16 Oct 2020 07:00:45: Done! pass1 - making usageList (76 chroms): 1 millis pass2 - checking and writing primary data (3772 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 07:01:08: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.10_peaks.xls INFO @ Fri, 16 Oct 2020 07:01:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:01:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.10_summits.bed INFO @ Fri, 16 Oct 2020 07:01:08: Done! pass1 - making usageList (58 chroms): 1 millis pass2 - checking and writing primary data (1933 records, 4 fields): 5 millis CompletedMACS2peakCalling BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 07:01:47: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.20_peaks.xls INFO @ Fri, 16 Oct 2020 07:01:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:01:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745132/ERX2745132.20_summits.bed INFO @ Fri, 16 Oct 2020 07:01:47: Done! pass1 - making usageList (43 chroms): 1 millis pass2 - checking and writing primary data (835 records, 4 fields): 4 millis CompletedMACS2peakCalling