Job ID = 10223636 SRX = ERX2745117 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T19:39:21 prefetch.2.10.7: 1) Downloading 'ERR2731892'... 2020-10-15T19:39:21 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T19:41:58 prefetch.2.10.7: HTTPS download succeed 2020-10-15T19:41:58 prefetch.2.10.7: 1) 'ERR2731892' was downloaded successfully Read 100667605 spots for ERR2731892/ERR2731892.sra Written 100667605 spots for ERR2731892/ERR2731892.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:03 Time loading mirror index: 00:00:02 Multiseed full-index search: 01:06:49 100667605 reads; of these: 100667605 (100.00%) were unpaired; of these: 1970788 (1.96%) aligned 0 times 84761009 (84.20%) aligned exactly 1 time 13935808 (13.84%) aligned >1 times 98.04% overall alignment rate Time searching: 01:06:54 Overall time: 01:06:54 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 44 files... [bam_rmdupse_core] 20221273 / 98696817 = 0.2049 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:09:21: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:09:21: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:09:21: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:09:26: 1000000 INFO @ Fri, 16 Oct 2020 06:09:32: 2000000 INFO @ Fri, 16 Oct 2020 06:09:37: 3000000 INFO @ Fri, 16 Oct 2020 06:09:42: 4000000 INFO @ Fri, 16 Oct 2020 06:09:47: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:09:51: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:09:51: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:09:51: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:09:53: 6000000 INFO @ Fri, 16 Oct 2020 06:09:57: 1000000 INFO @ Fri, 16 Oct 2020 06:09:58: 7000000 INFO @ Fri, 16 Oct 2020 06:10:03: 2000000 INFO @ Fri, 16 Oct 2020 06:10:04: 8000000 INFO @ Fri, 16 Oct 2020 06:10:08: 3000000 INFO @ Fri, 16 Oct 2020 06:10:10: 9000000 INFO @ Fri, 16 Oct 2020 06:10:14: 4000000 INFO @ Fri, 16 Oct 2020 06:10:16: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:10:20: 5000000 INFO @ Fri, 16 Oct 2020 06:10:21: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:10:21: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:10:21: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:10:21: 11000000 INFO @ Fri, 16 Oct 2020 06:10:26: 6000000 INFO @ Fri, 16 Oct 2020 06:10:27: 12000000 INFO @ Fri, 16 Oct 2020 06:10:28: 1000000 INFO @ Fri, 16 Oct 2020 06:10:32: 7000000 INFO @ Fri, 16 Oct 2020 06:10:33: 13000000 INFO @ Fri, 16 Oct 2020 06:10:35: 2000000 INFO @ Fri, 16 Oct 2020 06:10:37: 8000000 INFO @ Fri, 16 Oct 2020 06:10:39: 14000000 INFO @ Fri, 16 Oct 2020 06:10:41: 3000000 INFO @ Fri, 16 Oct 2020 06:10:43: 9000000 INFO @ Fri, 16 Oct 2020 06:10:44: 15000000 INFO @ Fri, 16 Oct 2020 06:10:48: 4000000 INFO @ Fri, 16 Oct 2020 06:10:49: 10000000 INFO @ Fri, 16 Oct 2020 06:10:50: 16000000 INFO @ Fri, 16 Oct 2020 06:10:55: 11000000 INFO @ Fri, 16 Oct 2020 06:10:55: 5000000 INFO @ Fri, 16 Oct 2020 06:10:56: 17000000 INFO @ Fri, 16 Oct 2020 06:11:00: 12000000 INFO @ Fri, 16 Oct 2020 06:11:02: 6000000 INFO @ Fri, 16 Oct 2020 06:11:02: 18000000 INFO @ Fri, 16 Oct 2020 06:11:06: 13000000 INFO @ Fri, 16 Oct 2020 06:11:08: 19000000 INFO @ Fri, 16 Oct 2020 06:11:08: 7000000 INFO @ Fri, 16 Oct 2020 06:11:12: 14000000 INFO @ Fri, 16 Oct 2020 06:11:13: 20000000 INFO @ Fri, 16 Oct 2020 06:11:15: 8000000 INFO @ Fri, 16 Oct 2020 06:11:18: 15000000 INFO @ Fri, 16 Oct 2020 06:11:19: 21000000 INFO @ Fri, 16 Oct 2020 06:11:22: 9000000 INFO @ Fri, 16 Oct 2020 06:11:24: 16000000 INFO @ Fri, 16 Oct 2020 06:11:25: 22000000 INFO @ Fri, 16 Oct 2020 06:11:28: 10000000 INFO @ Fri, 16 Oct 2020 06:11:29: 17000000 INFO @ Fri, 16 Oct 2020 06:11:31: 23000000 INFO @ Fri, 16 Oct 2020 06:11:35: 11000000 INFO @ Fri, 16 Oct 2020 06:11:35: 18000000 INFO @ Fri, 16 Oct 2020 06:11:37: 24000000 INFO @ Fri, 16 Oct 2020 06:11:41: 19000000 INFO @ Fri, 16 Oct 2020 06:11:42: 12000000 INFO @ Fri, 16 Oct 2020 06:11:42: 25000000 INFO @ Fri, 16 Oct 2020 06:11:47: 20000000 INFO @ Fri, 16 Oct 2020 06:11:48: 26000000 INFO @ Fri, 16 Oct 2020 06:11:49: 13000000 INFO @ Fri, 16 Oct 2020 06:11:53: 21000000 INFO @ Fri, 16 Oct 2020 06:11:54: 27000000 INFO @ Fri, 16 Oct 2020 06:11:55: 14000000 INFO @ Fri, 16 Oct 2020 06:11:59: 22000000 INFO @ Fri, 16 Oct 2020 06:12:00: 28000000 INFO @ Fri, 16 Oct 2020 06:12:02: 15000000 INFO @ Fri, 16 Oct 2020 06:12:05: 23000000 INFO @ Fri, 16 Oct 2020 06:12:06: 29000000 INFO @ Fri, 16 Oct 2020 06:12:09: 16000000 INFO @ Fri, 16 Oct 2020 06:12:10: 24000000 INFO @ Fri, 16 Oct 2020 06:12:11: 30000000 INFO @ Fri, 16 Oct 2020 06:12:16: 17000000 INFO @ Fri, 16 Oct 2020 06:12:16: 25000000 INFO @ Fri, 16 Oct 2020 06:12:17: 31000000 INFO @ Fri, 16 Oct 2020 06:12:22: 26000000 INFO @ Fri, 16 Oct 2020 06:12:23: 18000000 INFO @ Fri, 16 Oct 2020 06:12:23: 32000000 INFO @ Fri, 16 Oct 2020 06:12:28: 27000000 INFO @ Fri, 16 Oct 2020 06:12:29: 33000000 INFO @ Fri, 16 Oct 2020 06:12:29: 19000000 INFO @ Fri, 16 Oct 2020 06:12:34: 28000000 INFO @ Fri, 16 Oct 2020 06:12:35: 34000000 INFO @ Fri, 16 Oct 2020 06:12:36: 20000000 INFO @ Fri, 16 Oct 2020 06:12:40: 29000000 INFO @ Fri, 16 Oct 2020 06:12:41: 35000000 INFO @ Fri, 16 Oct 2020 06:12:43: 21000000 INFO @ Fri, 16 Oct 2020 06:12:45: 30000000 INFO @ Fri, 16 Oct 2020 06:12:46: 36000000 INFO @ Fri, 16 Oct 2020 06:12:49: 22000000 INFO @ Fri, 16 Oct 2020 06:12:51: 31000000 INFO @ Fri, 16 Oct 2020 06:12:52: 37000000 INFO @ Fri, 16 Oct 2020 06:12:56: 23000000 INFO @ Fri, 16 Oct 2020 06:12:57: 32000000 INFO @ Fri, 16 Oct 2020 06:12:58: 38000000 INFO @ Fri, 16 Oct 2020 06:13:03: 33000000 INFO @ Fri, 16 Oct 2020 06:13:03: 24000000 INFO @ Fri, 16 Oct 2020 06:13:04: 39000000 INFO @ Fri, 16 Oct 2020 06:13:09: 34000000 INFO @ Fri, 16 Oct 2020 06:13:10: 40000000 INFO @ Fri, 16 Oct 2020 06:13:10: 25000000 INFO @ Fri, 16 Oct 2020 06:13:14: 35000000 INFO @ Fri, 16 Oct 2020 06:13:16: 41000000 INFO @ Fri, 16 Oct 2020 06:13:17: 26000000 INFO @ Fri, 16 Oct 2020 06:13:20: 36000000 INFO @ Fri, 16 Oct 2020 06:13:21: 42000000 INFO @ Fri, 16 Oct 2020 06:13:23: 27000000 INFO @ Fri, 16 Oct 2020 06:13:26: 37000000 INFO @ Fri, 16 Oct 2020 06:13:27: 43000000 INFO @ Fri, 16 Oct 2020 06:13:30: 28000000 INFO @ Fri, 16 Oct 2020 06:13:32: 38000000 INFO @ Fri, 16 Oct 2020 06:13:33: 44000000 INFO @ Fri, 16 Oct 2020 06:13:37: 29000000 INFO @ Fri, 16 Oct 2020 06:13:38: 39000000 INFO @ Fri, 16 Oct 2020 06:13:39: 45000000 INFO @ Fri, 16 Oct 2020 06:13:44: 40000000 INFO @ Fri, 16 Oct 2020 06:13:44: 30000000 INFO @ Fri, 16 Oct 2020 06:13:45: 46000000 INFO @ Fri, 16 Oct 2020 06:13:50: 41000000 INFO @ Fri, 16 Oct 2020 06:13:51: 47000000 INFO @ Fri, 16 Oct 2020 06:13:51: 31000000 INFO @ Fri, 16 Oct 2020 06:13:56: 42000000 INFO @ Fri, 16 Oct 2020 06:13:56: 48000000 INFO @ Fri, 16 Oct 2020 06:13:57: 32000000 INFO @ Fri, 16 Oct 2020 06:14:01: 43000000 INFO @ Fri, 16 Oct 2020 06:14:02: 49000000 INFO @ Fri, 16 Oct 2020 06:14:04: 33000000 INFO @ Fri, 16 Oct 2020 06:14:07: 44000000 INFO @ Fri, 16 Oct 2020 06:14:08: 50000000 INFO @ Fri, 16 Oct 2020 06:14:11: 34000000 INFO @ Fri, 16 Oct 2020 06:14:13: 45000000 INFO @ Fri, 16 Oct 2020 06:14:14: 51000000 INFO @ Fri, 16 Oct 2020 06:14:18: 35000000 INFO @ Fri, 16 Oct 2020 06:14:19: 46000000 INFO @ Fri, 16 Oct 2020 06:14:20: 52000000 INFO @ Fri, 16 Oct 2020 06:14:25: 36000000 INFO @ Fri, 16 Oct 2020 06:14:25: 47000000 INFO @ Fri, 16 Oct 2020 06:14:25: 53000000 INFO @ Fri, 16 Oct 2020 06:14:30: 48000000 INFO @ Fri, 16 Oct 2020 06:14:31: 54000000 INFO @ Fri, 16 Oct 2020 06:14:31: 37000000 INFO @ Fri, 16 Oct 2020 06:14:36: 49000000 INFO @ Fri, 16 Oct 2020 06:14:37: 55000000 INFO @ Fri, 16 Oct 2020 06:14:38: 38000000 INFO @ Fri, 16 Oct 2020 06:14:42: 50000000 INFO @ Fri, 16 Oct 2020 06:14:43: 56000000 INFO @ Fri, 16 Oct 2020 06:14:45: 39000000 INFO @ Fri, 16 Oct 2020 06:14:48: 51000000 INFO @ Fri, 16 Oct 2020 06:14:49: 57000000 INFO @ Fri, 16 Oct 2020 06:14:52: 40000000 INFO @ Fri, 16 Oct 2020 06:14:54: 52000000 INFO @ Fri, 16 Oct 2020 06:14:55: 58000000 INFO @ Fri, 16 Oct 2020 06:14:58: 41000000 INFO @ Fri, 16 Oct 2020 06:15:00: 53000000 INFO @ Fri, 16 Oct 2020 06:15:00: 59000000 INFO @ Fri, 16 Oct 2020 06:15:05: 42000000 INFO @ Fri, 16 Oct 2020 06:15:05: 54000000 INFO @ Fri, 16 Oct 2020 06:15:06: 60000000 INFO @ Fri, 16 Oct 2020 06:15:11: 55000000 INFO @ Fri, 16 Oct 2020 06:15:12: 43000000 INFO @ Fri, 16 Oct 2020 06:15:12: 61000000 INFO @ Fri, 16 Oct 2020 06:15:17: 56000000 INFO @ Fri, 16 Oct 2020 06:15:18: 62000000 INFO @ Fri, 16 Oct 2020 06:15:19: 44000000 INFO @ Fri, 16 Oct 2020 06:15:23: 57000000 INFO @ Fri, 16 Oct 2020 06:15:24: 63000000 INFO @ Fri, 16 Oct 2020 06:15:25: 45000000 INFO @ Fri, 16 Oct 2020 06:15:29: 58000000 INFO @ Fri, 16 Oct 2020 06:15:30: 64000000 INFO @ Fri, 16 Oct 2020 06:15:32: 46000000 INFO @ Fri, 16 Oct 2020 06:15:35: 59000000 INFO @ Fri, 16 Oct 2020 06:15:35: 65000000 INFO @ Fri, 16 Oct 2020 06:15:39: 47000000 INFO @ Fri, 16 Oct 2020 06:15:41: 60000000 INFO @ Fri, 16 Oct 2020 06:15:41: 66000000 INFO @ Fri, 16 Oct 2020 06:15:46: 48000000 INFO @ Fri, 16 Oct 2020 06:15:47: 61000000 INFO @ Fri, 16 Oct 2020 06:15:47: 67000000 INFO @ Fri, 16 Oct 2020 06:15:52: 62000000 INFO @ Fri, 16 Oct 2020 06:15:53: 49000000 INFO @ Fri, 16 Oct 2020 06:15:53: 68000000 INFO @ Fri, 16 Oct 2020 06:15:58: 63000000 INFO @ Fri, 16 Oct 2020 06:15:59: 69000000 INFO @ Fri, 16 Oct 2020 06:15:59: 50000000 INFO @ Fri, 16 Oct 2020 06:16:04: 64000000 INFO @ Fri, 16 Oct 2020 06:16:05: 70000000 INFO @ Fri, 16 Oct 2020 06:16:06: 51000000 INFO @ Fri, 16 Oct 2020 06:16:10: 65000000 INFO @ Fri, 16 Oct 2020 06:16:10: 71000000 INFO @ Fri, 16 Oct 2020 06:16:13: 52000000 INFO @ Fri, 16 Oct 2020 06:16:16: 66000000 INFO @ Fri, 16 Oct 2020 06:16:16: 72000000 INFO @ Fri, 16 Oct 2020 06:16:20: 53000000 INFO @ Fri, 16 Oct 2020 06:16:22: 67000000 INFO @ Fri, 16 Oct 2020 06:16:22: 73000000 INFO @ Fri, 16 Oct 2020 06:16:27: 54000000 INFO @ Fri, 16 Oct 2020 06:16:27: 68000000 INFO @ Fri, 16 Oct 2020 06:16:28: 74000000 INFO @ Fri, 16 Oct 2020 06:16:33: 69000000 INFO @ Fri, 16 Oct 2020 06:16:33: 55000000 INFO @ Fri, 16 Oct 2020 06:16:34: 75000000 INFO @ Fri, 16 Oct 2020 06:16:39: 70000000 INFO @ Fri, 16 Oct 2020 06:16:40: 76000000 INFO @ Fri, 16 Oct 2020 06:16:40: 56000000 INFO @ Fri, 16 Oct 2020 06:16:45: 71000000 INFO @ Fri, 16 Oct 2020 06:16:46: 77000000 INFO @ Fri, 16 Oct 2020 06:16:47: 57000000 INFO @ Fri, 16 Oct 2020 06:16:51: 72000000 INFO @ Fri, 16 Oct 2020 06:16:51: 78000000 INFO @ Fri, 16 Oct 2020 06:16:54: 58000000 INFO @ Fri, 16 Oct 2020 06:16:55: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:16:55: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:16:55: #1 total tags in treatment: 78475544 INFO @ Fri, 16 Oct 2020 06:16:55: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:16:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:16:56: #1 tags after filtering in treatment: 78475461 INFO @ Fri, 16 Oct 2020 06:16:56: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:16:56: #1 finished! INFO @ Fri, 16 Oct 2020 06:16:56: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:16:56: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:16:57: 73000000 INFO @ Fri, 16 Oct 2020 06:17:01: 59000000 INFO @ Fri, 16 Oct 2020 06:17:02: 74000000 INFO @ Fri, 16 Oct 2020 06:17:05: #2 number of paired peaks: 77970 INFO @ Fri, 16 Oct 2020 06:17:05: start model_add_line... INFO @ Fri, 16 Oct 2020 06:17:06: start X-correlation... INFO @ Fri, 16 Oct 2020 06:17:06: end of X-cor INFO @ Fri, 16 Oct 2020 06:17:06: #2 finished! INFO @ Fri, 16 Oct 2020 06:17:06: #2 predicted fragment length is 214 bps INFO @ Fri, 16 Oct 2020 06:17:06: #2 alternative fragment length(s) may be 3,214 bps INFO @ Fri, 16 Oct 2020 06:17:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.05_model.r INFO @ Fri, 16 Oct 2020 06:17:06: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:17:06: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:17:07: 60000000 INFO @ Fri, 16 Oct 2020 06:17:08: 75000000 INFO @ Fri, 16 Oct 2020 06:17:14: 76000000 INFO @ Fri, 16 Oct 2020 06:17:14: 61000000 INFO @ Fri, 16 Oct 2020 06:17:20: 77000000 INFO @ Fri, 16 Oct 2020 06:17:21: 62000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 06:17:26: 78000000 INFO @ Fri, 16 Oct 2020 06:17:27: 63000000 INFO @ Fri, 16 Oct 2020 06:17:29: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:17:29: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:17:29: #1 total tags in treatment: 78475544 INFO @ Fri, 16 Oct 2020 06:17:29: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:17:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:17:30: #1 tags after filtering in treatment: 78475461 INFO @ Fri, 16 Oct 2020 06:17:30: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:17:30: #1 finished! INFO @ Fri, 16 Oct 2020 06:17:30: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:17:30: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:17:34: 64000000 INFO @ Fri, 16 Oct 2020 06:17:39: #2 number of paired peaks: 77970 INFO @ Fri, 16 Oct 2020 06:17:39: start model_add_line... INFO @ Fri, 16 Oct 2020 06:17:40: start X-correlation... INFO @ Fri, 16 Oct 2020 06:17:40: end of X-cor INFO @ Fri, 16 Oct 2020 06:17:40: #2 finished! INFO @ Fri, 16 Oct 2020 06:17:40: #2 predicted fragment length is 214 bps INFO @ Fri, 16 Oct 2020 06:17:40: #2 alternative fragment length(s) may be 3,214 bps INFO @ Fri, 16 Oct 2020 06:17:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.10_model.r INFO @ Fri, 16 Oct 2020 06:17:40: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:17:40: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:17:40: 65000000 INFO @ Fri, 16 Oct 2020 06:17:47: 66000000 INFO @ Fri, 16 Oct 2020 06:17:53: 67000000 INFO @ Fri, 16 Oct 2020 06:17:59: 68000000 INFO @ Fri, 16 Oct 2020 06:18:05: 69000000 INFO @ Fri, 16 Oct 2020 06:18:12: 70000000 INFO @ Fri, 16 Oct 2020 06:18:18: 71000000 INFO @ Fri, 16 Oct 2020 06:18:24: 72000000 INFO @ Fri, 16 Oct 2020 06:18:30: 73000000 INFO @ Fri, 16 Oct 2020 06:18:36: 74000000 INFO @ Fri, 16 Oct 2020 06:18:42: 75000000 INFO @ Fri, 16 Oct 2020 06:18:49: 76000000 INFO @ Fri, 16 Oct 2020 06:18:55: 77000000 INFO @ Fri, 16 Oct 2020 06:19:00: 78000000 INFO @ Fri, 16 Oct 2020 06:19:04: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:19:04: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:19:04: #1 total tags in treatment: 78475544 INFO @ Fri, 16 Oct 2020 06:19:04: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:19:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:19:05: #1 tags after filtering in treatment: 78475461 INFO @ Fri, 16 Oct 2020 06:19:05: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:19:05: #1 finished! INFO @ Fri, 16 Oct 2020 06:19:05: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:19:05: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:19:14: #2 number of paired peaks: 77970 INFO @ Fri, 16 Oct 2020 06:19:14: start model_add_line... INFO @ Fri, 16 Oct 2020 06:19:15: start X-correlation... INFO @ Fri, 16 Oct 2020 06:19:15: end of X-cor INFO @ Fri, 16 Oct 2020 06:19:15: #2 finished! INFO @ Fri, 16 Oct 2020 06:19:15: #2 predicted fragment length is 214 bps INFO @ Fri, 16 Oct 2020 06:19:15: #2 alternative fragment length(s) may be 3,214 bps INFO @ Fri, 16 Oct 2020 06:19:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.20_model.r INFO @ Fri, 16 Oct 2020 06:19:15: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:19:15: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:19:54: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 06:20:37: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:21:29: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.05_peaks.xls INFO @ Fri, 16 Oct 2020 06:21:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:21:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.05_summits.bed INFO @ Fri, 16 Oct 2020 06:21:29: Done! pass1 - making usageList (138 chroms): 8 millis pass2 - checking and writing primary data (53082 records, 4 fields): 49 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:22:12: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:22:14: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.10_peaks.xls INFO @ Fri, 16 Oct 2020 06:22:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:22:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.10_summits.bed INFO @ Fri, 16 Oct 2020 06:22:14: Done! pass1 - making usageList (69 chroms): 2 millis pass2 - checking and writing primary data (13790 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:23:48: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.20_peaks.xls INFO @ Fri, 16 Oct 2020 06:23:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:23:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745117/ERX2745117.20_summits.bed INFO @ Fri, 16 Oct 2020 06:23:48: Done! pass1 - making usageList (40 chroms): 0 millis pass2 - checking and writing primary data (1009 records, 4 fields): 4 millis CompletedMACS2peakCalling