Job ID = 10223624 SRX = ERX2745115 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T19:07:33 prefetch.2.10.7: 1) Downloading 'ERR2731890'... 2020-10-15T19:07:33 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T19:09:53 prefetch.2.10.7: HTTPS download succeed 2020-10-15T19:09:53 prefetch.2.10.7: 1) 'ERR2731890' was downloaded successfully Read 117290799 spots for ERR2731890/ERR2731890.sra Written 117290799 spots for ERR2731890/ERR2731890.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:03 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:20:28 117290799 reads; of these: 117290799 (100.00%) were unpaired; of these: 6078764 (5.18%) aligned 0 times 89673434 (76.45%) aligned exactly 1 time 21538601 (18.36%) aligned >1 times 94.82% overall alignment rate Time searching: 01:20:34 Overall time: 01:20:34 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 48 files... [bam_rmdupse_core] 34318234 / 111212035 = 0.3086 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:52:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:52:41: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:52:41: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:52:46: 1000000 INFO @ Fri, 16 Oct 2020 05:52:51: 2000000 INFO @ Fri, 16 Oct 2020 05:52:56: 3000000 INFO @ Fri, 16 Oct 2020 05:53:01: 4000000 INFO @ Fri, 16 Oct 2020 05:53:06: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:53:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:53:11: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:53:11: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:53:11: 6000000 INFO @ Fri, 16 Oct 2020 05:53:16: 1000000 INFO @ Fri, 16 Oct 2020 05:53:17: 7000000 INFO @ Fri, 16 Oct 2020 05:53:22: 2000000 INFO @ Fri, 16 Oct 2020 05:53:22: 8000000 INFO @ Fri, 16 Oct 2020 05:53:27: 3000000 INFO @ Fri, 16 Oct 2020 05:53:28: 9000000 INFO @ Fri, 16 Oct 2020 05:53:33: 4000000 INFO @ Fri, 16 Oct 2020 05:53:33: 10000000 INFO @ Fri, 16 Oct 2020 05:53:38: 5000000 INFO @ Fri, 16 Oct 2020 05:53:39: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:53:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:53:41: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:53:41: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:53:44: 6000000 INFO @ Fri, 16 Oct 2020 05:53:44: 12000000 INFO @ Fri, 16 Oct 2020 05:53:47: 1000000 INFO @ Fri, 16 Oct 2020 05:53:50: 7000000 INFO @ Fri, 16 Oct 2020 05:53:50: 13000000 INFO @ Fri, 16 Oct 2020 05:53:54: 2000000 INFO @ Fri, 16 Oct 2020 05:53:56: 8000000 INFO @ Fri, 16 Oct 2020 05:53:56: 14000000 INFO @ Fri, 16 Oct 2020 05:54:00: 3000000 INFO @ Fri, 16 Oct 2020 05:54:01: 15000000 INFO @ Fri, 16 Oct 2020 05:54:01: 9000000 INFO @ Fri, 16 Oct 2020 05:54:07: 4000000 INFO @ Fri, 16 Oct 2020 05:54:07: 16000000 INFO @ Fri, 16 Oct 2020 05:54:07: 10000000 INFO @ Fri, 16 Oct 2020 05:54:13: 17000000 INFO @ Fri, 16 Oct 2020 05:54:13: 11000000 INFO @ Fri, 16 Oct 2020 05:54:13: 5000000 INFO @ Fri, 16 Oct 2020 05:54:18: 18000000 INFO @ Fri, 16 Oct 2020 05:54:19: 12000000 INFO @ Fri, 16 Oct 2020 05:54:20: 6000000 INFO @ Fri, 16 Oct 2020 05:54:24: 19000000 INFO @ Fri, 16 Oct 2020 05:54:24: 13000000 INFO @ Fri, 16 Oct 2020 05:54:26: 7000000 INFO @ Fri, 16 Oct 2020 05:54:30: 20000000 INFO @ Fri, 16 Oct 2020 05:54:30: 14000000 INFO @ Fri, 16 Oct 2020 05:54:33: 8000000 INFO @ Fri, 16 Oct 2020 05:54:35: 21000000 INFO @ Fri, 16 Oct 2020 05:54:36: 15000000 INFO @ Fri, 16 Oct 2020 05:54:39: 9000000 INFO @ Fri, 16 Oct 2020 05:54:41: 22000000 INFO @ Fri, 16 Oct 2020 05:54:42: 16000000 INFO @ Fri, 16 Oct 2020 05:54:45: 10000000 INFO @ Fri, 16 Oct 2020 05:54:47: 23000000 INFO @ Fri, 16 Oct 2020 05:54:47: 17000000 INFO @ Fri, 16 Oct 2020 05:54:52: 11000000 INFO @ Fri, 16 Oct 2020 05:54:52: 24000000 INFO @ Fri, 16 Oct 2020 05:54:53: 18000000 INFO @ Fri, 16 Oct 2020 05:54:58: 12000000 INFO @ Fri, 16 Oct 2020 05:54:58: 25000000 INFO @ Fri, 16 Oct 2020 05:54:59: 19000000 INFO @ Fri, 16 Oct 2020 05:55:04: 26000000 INFO @ Fri, 16 Oct 2020 05:55:04: 13000000 INFO @ Fri, 16 Oct 2020 05:55:05: 20000000 INFO @ Fri, 16 Oct 2020 05:55:10: 27000000 INFO @ Fri, 16 Oct 2020 05:55:10: 21000000 INFO @ Fri, 16 Oct 2020 05:55:10: 14000000 INFO @ Fri, 16 Oct 2020 05:55:15: 28000000 INFO @ Fri, 16 Oct 2020 05:55:16: 22000000 INFO @ Fri, 16 Oct 2020 05:55:17: 15000000 INFO @ Fri, 16 Oct 2020 05:55:21: 29000000 INFO @ Fri, 16 Oct 2020 05:55:22: 23000000 INFO @ Fri, 16 Oct 2020 05:55:23: 16000000 INFO @ Fri, 16 Oct 2020 05:55:27: 30000000 INFO @ Fri, 16 Oct 2020 05:55:27: 24000000 INFO @ Fri, 16 Oct 2020 05:55:29: 17000000 INFO @ Fri, 16 Oct 2020 05:55:32: 31000000 INFO @ Fri, 16 Oct 2020 05:55:33: 25000000 INFO @ Fri, 16 Oct 2020 05:55:36: 18000000 INFO @ Fri, 16 Oct 2020 05:55:38: 32000000 INFO @ Fri, 16 Oct 2020 05:55:39: 26000000 INFO @ Fri, 16 Oct 2020 05:55:42: 19000000 INFO @ Fri, 16 Oct 2020 05:55:44: 33000000 INFO @ Fri, 16 Oct 2020 05:55:45: 27000000 INFO @ Fri, 16 Oct 2020 05:55:48: 20000000 INFO @ Fri, 16 Oct 2020 05:55:50: 34000000 INFO @ Fri, 16 Oct 2020 05:55:50: 28000000 INFO @ Fri, 16 Oct 2020 05:55:54: 21000000 INFO @ Fri, 16 Oct 2020 05:55:55: 35000000 INFO @ Fri, 16 Oct 2020 05:55:56: 29000000 INFO @ Fri, 16 Oct 2020 05:56:00: 22000000 INFO @ Fri, 16 Oct 2020 05:56:01: 36000000 INFO @ Fri, 16 Oct 2020 05:56:02: 30000000 INFO @ Fri, 16 Oct 2020 05:56:06: 37000000 INFO @ Fri, 16 Oct 2020 05:56:07: 23000000 INFO @ Fri, 16 Oct 2020 05:56:07: 31000000 INFO @ Fri, 16 Oct 2020 05:56:12: 38000000 INFO @ Fri, 16 Oct 2020 05:56:13: 24000000 INFO @ Fri, 16 Oct 2020 05:56:13: 32000000 INFO @ Fri, 16 Oct 2020 05:56:18: 39000000 INFO @ Fri, 16 Oct 2020 05:56:19: 33000000 INFO @ Fri, 16 Oct 2020 05:56:19: 25000000 INFO @ Fri, 16 Oct 2020 05:56:23: 40000000 INFO @ Fri, 16 Oct 2020 05:56:25: 34000000 INFO @ Fri, 16 Oct 2020 05:56:25: 26000000 INFO @ Fri, 16 Oct 2020 05:56:29: 41000000 INFO @ Fri, 16 Oct 2020 05:56:30: 35000000 INFO @ Fri, 16 Oct 2020 05:56:31: 27000000 INFO @ Fri, 16 Oct 2020 05:56:35: 42000000 INFO @ Fri, 16 Oct 2020 05:56:36: 36000000 INFO @ Fri, 16 Oct 2020 05:56:38: 28000000 INFO @ Fri, 16 Oct 2020 05:56:41: 43000000 INFO @ Fri, 16 Oct 2020 05:56:42: 37000000 INFO @ Fri, 16 Oct 2020 05:56:44: 29000000 INFO @ Fri, 16 Oct 2020 05:56:46: 44000000 INFO @ Fri, 16 Oct 2020 05:56:48: 38000000 INFO @ Fri, 16 Oct 2020 05:56:50: 30000000 INFO @ Fri, 16 Oct 2020 05:56:52: 45000000 INFO @ Fri, 16 Oct 2020 05:56:53: 39000000 INFO @ Fri, 16 Oct 2020 05:56:57: 31000000 INFO @ Fri, 16 Oct 2020 05:56:58: 46000000 INFO @ Fri, 16 Oct 2020 05:56:59: 40000000 INFO @ Fri, 16 Oct 2020 05:57:03: 32000000 INFO @ Fri, 16 Oct 2020 05:57:03: 47000000 INFO @ Fri, 16 Oct 2020 05:57:05: 41000000 INFO @ Fri, 16 Oct 2020 05:57:09: 48000000 INFO @ Fri, 16 Oct 2020 05:57:09: 33000000 INFO @ Fri, 16 Oct 2020 05:57:10: 42000000 INFO @ Fri, 16 Oct 2020 05:57:15: 49000000 INFO @ Fri, 16 Oct 2020 05:57:16: 34000000 INFO @ Fri, 16 Oct 2020 05:57:16: 43000000 INFO @ Fri, 16 Oct 2020 05:57:21: 50000000 INFO @ Fri, 16 Oct 2020 05:57:22: 35000000 INFO @ Fri, 16 Oct 2020 05:57:22: 44000000 INFO @ Fri, 16 Oct 2020 05:57:26: 51000000 INFO @ Fri, 16 Oct 2020 05:57:27: 45000000 INFO @ Fri, 16 Oct 2020 05:57:28: 36000000 INFO @ Fri, 16 Oct 2020 05:57:32: 52000000 INFO @ Fri, 16 Oct 2020 05:57:33: 46000000 INFO @ Fri, 16 Oct 2020 05:57:34: 37000000 INFO @ Fri, 16 Oct 2020 05:57:38: 53000000 INFO @ Fri, 16 Oct 2020 05:57:39: 47000000 INFO @ Fri, 16 Oct 2020 05:57:40: 38000000 INFO @ Fri, 16 Oct 2020 05:57:43: 54000000 INFO @ Fri, 16 Oct 2020 05:57:45: 48000000 INFO @ Fri, 16 Oct 2020 05:57:46: 39000000 INFO @ Fri, 16 Oct 2020 05:57:49: 55000000 INFO @ Fri, 16 Oct 2020 05:57:50: 49000000 INFO @ Fri, 16 Oct 2020 05:57:53: 40000000 INFO @ Fri, 16 Oct 2020 05:57:55: 56000000 INFO @ Fri, 16 Oct 2020 05:57:56: 50000000 INFO @ Fri, 16 Oct 2020 05:57:59: 41000000 INFO @ Fri, 16 Oct 2020 05:58:01: 57000000 INFO @ Fri, 16 Oct 2020 05:58:02: 51000000 INFO @ Fri, 16 Oct 2020 05:58:05: 42000000 INFO @ Fri, 16 Oct 2020 05:58:06: 58000000 INFO @ Fri, 16 Oct 2020 05:58:07: 52000000 INFO @ Fri, 16 Oct 2020 05:58:11: 43000000 INFO @ Fri, 16 Oct 2020 05:58:12: 59000000 INFO @ Fri, 16 Oct 2020 05:58:13: 53000000 INFO @ Fri, 16 Oct 2020 05:58:17: 44000000 INFO @ Fri, 16 Oct 2020 05:58:18: 60000000 INFO @ Fri, 16 Oct 2020 05:58:19: 54000000 INFO @ Fri, 16 Oct 2020 05:58:23: 61000000 INFO @ Fri, 16 Oct 2020 05:58:24: 45000000 INFO @ Fri, 16 Oct 2020 05:58:24: 55000000 INFO @ Fri, 16 Oct 2020 05:58:29: 62000000 INFO @ Fri, 16 Oct 2020 05:58:30: 46000000 INFO @ Fri, 16 Oct 2020 05:58:30: 56000000 INFO @ Fri, 16 Oct 2020 05:58:34: 63000000 INFO @ Fri, 16 Oct 2020 05:58:36: 57000000 INFO @ Fri, 16 Oct 2020 05:58:36: 47000000 INFO @ Fri, 16 Oct 2020 05:58:40: 64000000 INFO @ Fri, 16 Oct 2020 05:58:42: 58000000 INFO @ Fri, 16 Oct 2020 05:58:42: 48000000 INFO @ Fri, 16 Oct 2020 05:58:46: 65000000 INFO @ Fri, 16 Oct 2020 05:58:47: 59000000 INFO @ Fri, 16 Oct 2020 05:58:49: 49000000 INFO @ Fri, 16 Oct 2020 05:58:51: 66000000 INFO @ Fri, 16 Oct 2020 05:58:53: 60000000 INFO @ Fri, 16 Oct 2020 05:58:55: 50000000 INFO @ Fri, 16 Oct 2020 05:58:57: 67000000 INFO @ Fri, 16 Oct 2020 05:58:59: 61000000 INFO @ Fri, 16 Oct 2020 05:59:01: 51000000 INFO @ Fri, 16 Oct 2020 05:59:03: 68000000 INFO @ Fri, 16 Oct 2020 05:59:04: 62000000 INFO @ Fri, 16 Oct 2020 05:59:07: 52000000 INFO @ Fri, 16 Oct 2020 05:59:09: 69000000 INFO @ Fri, 16 Oct 2020 05:59:10: 63000000 INFO @ Fri, 16 Oct 2020 05:59:13: 53000000 INFO @ Fri, 16 Oct 2020 05:59:14: 70000000 INFO @ Fri, 16 Oct 2020 05:59:16: 64000000 INFO @ Fri, 16 Oct 2020 05:59:20: 54000000 INFO @ Fri, 16 Oct 2020 05:59:20: 71000000 INFO @ Fri, 16 Oct 2020 05:59:22: 65000000 INFO @ Fri, 16 Oct 2020 05:59:26: 55000000 INFO @ Fri, 16 Oct 2020 05:59:26: 72000000 INFO @ Fri, 16 Oct 2020 05:59:27: 66000000 INFO @ Fri, 16 Oct 2020 05:59:32: 73000000 INFO @ Fri, 16 Oct 2020 05:59:32: 56000000 INFO @ Fri, 16 Oct 2020 05:59:33: 67000000 INFO @ Fri, 16 Oct 2020 05:59:37: 74000000 INFO @ Fri, 16 Oct 2020 05:59:39: 68000000 INFO @ Fri, 16 Oct 2020 05:59:39: 57000000 INFO @ Fri, 16 Oct 2020 05:59:43: 75000000 INFO @ Fri, 16 Oct 2020 05:59:44: 69000000 INFO @ Fri, 16 Oct 2020 05:59:45: 58000000 INFO @ Fri, 16 Oct 2020 05:59:49: 76000000 INFO @ Fri, 16 Oct 2020 05:59:50: 70000000 INFO @ Fri, 16 Oct 2020 05:59:51: 59000000 INFO @ Fri, 16 Oct 2020 05:59:54: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:59:54: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:59:54: #1 total tags in treatment: 76893801 INFO @ Fri, 16 Oct 2020 05:59:54: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:59:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:59:56: #1 tags after filtering in treatment: 76893748 INFO @ Fri, 16 Oct 2020 05:59:56: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:59:56: #1 finished! INFO @ Fri, 16 Oct 2020 05:59:56: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:59:56: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:59:56: 71000000 INFO @ Fri, 16 Oct 2020 05:59:58: 60000000 INFO @ Fri, 16 Oct 2020 06:00:01: 72000000 INFO @ Fri, 16 Oct 2020 06:00:02: #2 number of paired peaks: 22922 INFO @ Fri, 16 Oct 2020 06:00:02: start model_add_line... INFO @ Fri, 16 Oct 2020 06:00:03: start X-correlation... INFO @ Fri, 16 Oct 2020 06:00:03: end of X-cor INFO @ Fri, 16 Oct 2020 06:00:03: #2 finished! INFO @ Fri, 16 Oct 2020 06:00:03: #2 predicted fragment length is 215 bps INFO @ Fri, 16 Oct 2020 06:00:03: #2 alternative fragment length(s) may be 4,215 bps INFO @ Fri, 16 Oct 2020 06:00:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.05_model.r INFO @ Fri, 16 Oct 2020 06:00:03: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:00:03: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:00:04: 61000000 INFO @ Fri, 16 Oct 2020 06:00:07: 73000000 INFO @ Fri, 16 Oct 2020 06:00:10: 62000000 INFO @ Fri, 16 Oct 2020 06:00:13: 74000000 INFO @ Fri, 16 Oct 2020 06:00:16: 63000000 INFO @ Fri, 16 Oct 2020 06:00:18: 75000000 INFO @ Fri, 16 Oct 2020 06:00:22: 64000000 INFO @ Fri, 16 Oct 2020 06:00:24: 76000000 INFO @ Fri, 16 Oct 2020 06:00:28: 65000000 INFO @ Fri, 16 Oct 2020 06:00:30: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:00:30: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:00:30: #1 total tags in treatment: 76893801 INFO @ Fri, 16 Oct 2020 06:00:30: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:00:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:00:31: #1 tags after filtering in treatment: 76893748 INFO @ Fri, 16 Oct 2020 06:00:31: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:00:31: #1 finished! INFO @ Fri, 16 Oct 2020 06:00:31: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:00:31: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:00:34: 66000000 INFO @ Fri, 16 Oct 2020 06:00:38: #2 number of paired peaks: 22922 INFO @ Fri, 16 Oct 2020 06:00:38: start model_add_line... INFO @ Fri, 16 Oct 2020 06:00:38: start X-correlation... INFO @ Fri, 16 Oct 2020 06:00:38: end of X-cor INFO @ Fri, 16 Oct 2020 06:00:38: #2 finished! INFO @ Fri, 16 Oct 2020 06:00:38: #2 predicted fragment length is 215 bps INFO @ Fri, 16 Oct 2020 06:00:38: #2 alternative fragment length(s) may be 4,215 bps INFO @ Fri, 16 Oct 2020 06:00:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.10_model.r INFO @ Fri, 16 Oct 2020 06:00:38: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:00:38: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:00:41: 67000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 06:00:47: 68000000 INFO @ Fri, 16 Oct 2020 06:00:53: 69000000 INFO @ Fri, 16 Oct 2020 06:00:59: 70000000 INFO @ Fri, 16 Oct 2020 06:01:04: 71000000 INFO @ Fri, 16 Oct 2020 06:01:10: 72000000 INFO @ Fri, 16 Oct 2020 06:01:16: 73000000 INFO @ Fri, 16 Oct 2020 06:01:22: 74000000 INFO @ Fri, 16 Oct 2020 06:01:28: 75000000 INFO @ Fri, 16 Oct 2020 06:01:34: 76000000 INFO @ Fri, 16 Oct 2020 06:01:39: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:01:39: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:01:39: #1 total tags in treatment: 76893801 INFO @ Fri, 16 Oct 2020 06:01:39: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:01:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:01:41: #1 tags after filtering in treatment: 76893748 INFO @ Fri, 16 Oct 2020 06:01:41: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:01:41: #1 finished! INFO @ Fri, 16 Oct 2020 06:01:41: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:01:41: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:01:47: #2 number of paired peaks: 22922 INFO @ Fri, 16 Oct 2020 06:01:47: start model_add_line... INFO @ Fri, 16 Oct 2020 06:01:48: start X-correlation... INFO @ Fri, 16 Oct 2020 06:01:48: end of X-cor INFO @ Fri, 16 Oct 2020 06:01:48: #2 finished! INFO @ Fri, 16 Oct 2020 06:01:48: #2 predicted fragment length is 215 bps INFO @ Fri, 16 Oct 2020 06:01:48: #2 alternative fragment length(s) may be 4,215 bps INFO @ Fri, 16 Oct 2020 06:01:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.20_model.r INFO @ Fri, 16 Oct 2020 06:01:48: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:01:48: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:02:55: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:03:28: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 06:04:29: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.05_peaks.xls INFO @ Fri, 16 Oct 2020 06:04:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:04:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.05_summits.bed INFO @ Fri, 16 Oct 2020 06:04:29: Done! pass1 - making usageList (114 chroms): 4 millis pass2 - checking and writing primary data (21459 records, 4 fields): 21 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:04:37: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:05:02: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.10_peaks.xls INFO @ Fri, 16 Oct 2020 06:05:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:05:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.10_summits.bed INFO @ Fri, 16 Oct 2020 06:05:02: Done! pass1 - making usageList (67 chroms): 1 millis pass2 - checking and writing primary data (3943 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:06:11: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.20_peaks.xls INFO @ Fri, 16 Oct 2020 06:06:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:06:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745115/ERX2745115.20_summits.bed INFO @ Fri, 16 Oct 2020 06:06:11: Done! pass1 - making usageList (47 chroms): 0 millis pass2 - checking and writing primary data (645 records, 4 fields): 4 millis CompletedMACS2peakCalling