Job ID = 10223621 SRX = ERX2745114 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T19:01:32 prefetch.2.10.7: 1) Downloading 'ERR2731889'... 2020-10-15T19:01:32 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T19:28:56 prefetch.2.10.7: HTTPS download failed 2020-10-15T19:28:56 prefetch.2.10.7: 1) failed to download ERR2731889 2020-10-15T19:29:06 prefetch.2.10.7: 1) Downloading 'ERR2731889'... 2020-10-15T19:29:06 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T19:29:06 prefetch.2.10.7: Continue download of 'ERR2731889' from 2099959924 2020-10-15T19:29:10 prefetch.2.10.7: HTTPS download succeed 2020-10-15T19:29:10 prefetch.2.10.7: 1) 'ERR2731889' was downloaded successfully Read 113671703 spots for ERR2731889/ERR2731889.sra Written 113671703 spots for ERR2731889/ERR2731889.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:04 Time loading mirror index: 00:00:05 Multiseed full-index search: 01:19:10 113671703 reads; of these: 113671703 (100.00%) were unpaired; of these: 2445351 (2.15%) aligned 0 times 90761862 (79.85%) aligned exactly 1 time 20464490 (18.00%) aligned >1 times 97.85% overall alignment rate Time searching: 01:19:20 Overall time: 01:19:20 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 48 files... [bam_rmdupse_core] 35669259 / 111226352 = 0.3207 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:10:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:10:49: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:10:49: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:10:54: 1000000 INFO @ Fri, 16 Oct 2020 06:11:00: 2000000 INFO @ Fri, 16 Oct 2020 06:11:05: 3000000 INFO @ Fri, 16 Oct 2020 06:11:10: 4000000 INFO @ Fri, 16 Oct 2020 06:11:16: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:11:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:11:19: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:11:19: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:11:21: 6000000 INFO @ Fri, 16 Oct 2020 06:11:25: 1000000 INFO @ Fri, 16 Oct 2020 06:11:27: 7000000 INFO @ Fri, 16 Oct 2020 06:11:30: 2000000 INFO @ Fri, 16 Oct 2020 06:11:33: 8000000 INFO @ Fri, 16 Oct 2020 06:11:36: 3000000 INFO @ Fri, 16 Oct 2020 06:11:38: 9000000 INFO @ Fri, 16 Oct 2020 06:11:42: 4000000 INFO @ Fri, 16 Oct 2020 06:11:44: 10000000 BedGraph に変換中... INFO @ Fri, 16 Oct 2020 06:11:47: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 06:11:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 06:11:49: #1 read tag files... INFO @ Fri, 16 Oct 2020 06:11:49: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 06:11:49: 11000000 INFO @ Fri, 16 Oct 2020 06:11:53: 6000000 INFO @ Fri, 16 Oct 2020 06:11:55: 1000000 INFO @ Fri, 16 Oct 2020 06:11:55: 12000000 INFO @ Fri, 16 Oct 2020 06:11:58: 7000000 INFO @ Fri, 16 Oct 2020 06:12:00: 2000000 INFO @ Fri, 16 Oct 2020 06:12:01: 13000000 INFO @ Fri, 16 Oct 2020 06:12:04: 8000000 INFO @ Fri, 16 Oct 2020 06:12:06: 3000000 INFO @ Fri, 16 Oct 2020 06:12:07: 14000000 INFO @ Fri, 16 Oct 2020 06:12:10: 9000000 INFO @ Fri, 16 Oct 2020 06:12:12: 4000000 INFO @ Fri, 16 Oct 2020 06:12:12: 15000000 INFO @ Fri, 16 Oct 2020 06:12:16: 10000000 INFO @ Fri, 16 Oct 2020 06:12:18: 5000000 INFO @ Fri, 16 Oct 2020 06:12:18: 16000000 INFO @ Fri, 16 Oct 2020 06:12:21: 11000000 INFO @ Fri, 16 Oct 2020 06:12:23: 6000000 INFO @ Fri, 16 Oct 2020 06:12:24: 17000000 INFO @ Fri, 16 Oct 2020 06:12:27: 12000000 INFO @ Fri, 16 Oct 2020 06:12:29: 7000000 INFO @ Fri, 16 Oct 2020 06:12:30: 18000000 INFO @ Fri, 16 Oct 2020 06:12:33: 13000000 INFO @ Fri, 16 Oct 2020 06:12:35: 8000000 INFO @ Fri, 16 Oct 2020 06:12:35: 19000000 INFO @ Fri, 16 Oct 2020 06:12:38: 14000000 INFO @ Fri, 16 Oct 2020 06:12:41: 9000000 INFO @ Fri, 16 Oct 2020 06:12:41: 20000000 INFO @ Fri, 16 Oct 2020 06:12:44: 15000000 INFO @ Fri, 16 Oct 2020 06:12:46: 10000000 INFO @ Fri, 16 Oct 2020 06:12:47: 21000000 INFO @ Fri, 16 Oct 2020 06:12:50: 16000000 INFO @ Fri, 16 Oct 2020 06:12:52: 11000000 INFO @ Fri, 16 Oct 2020 06:12:53: 22000000 INFO @ Fri, 16 Oct 2020 06:12:55: 17000000 INFO @ Fri, 16 Oct 2020 06:12:57: 12000000 INFO @ Fri, 16 Oct 2020 06:12:58: 23000000 INFO @ Fri, 16 Oct 2020 06:13:01: 18000000 INFO @ Fri, 16 Oct 2020 06:13:03: 13000000 INFO @ Fri, 16 Oct 2020 06:13:04: 24000000 INFO @ Fri, 16 Oct 2020 06:13:07: 19000000 INFO @ Fri, 16 Oct 2020 06:13:09: 14000000 INFO @ Fri, 16 Oct 2020 06:13:10: 25000000 INFO @ Fri, 16 Oct 2020 06:13:12: 20000000 INFO @ Fri, 16 Oct 2020 06:13:15: 15000000 INFO @ Fri, 16 Oct 2020 06:13:15: 26000000 INFO @ Fri, 16 Oct 2020 06:13:18: 21000000 INFO @ Fri, 16 Oct 2020 06:13:20: 16000000 INFO @ Fri, 16 Oct 2020 06:13:21: 27000000 INFO @ Fri, 16 Oct 2020 06:13:23: 22000000 INFO @ Fri, 16 Oct 2020 06:13:26: 17000000 INFO @ Fri, 16 Oct 2020 06:13:27: 28000000 INFO @ Fri, 16 Oct 2020 06:13:29: 23000000 INFO @ Fri, 16 Oct 2020 06:13:32: 18000000 INFO @ Fri, 16 Oct 2020 06:13:32: 29000000 INFO @ Fri, 16 Oct 2020 06:13:35: 24000000 INFO @ Fri, 16 Oct 2020 06:13:37: 19000000 INFO @ Fri, 16 Oct 2020 06:13:38: 30000000 INFO @ Fri, 16 Oct 2020 06:13:41: 25000000 INFO @ Fri, 16 Oct 2020 06:13:43: 20000000 INFO @ Fri, 16 Oct 2020 06:13:44: 31000000 INFO @ Fri, 16 Oct 2020 06:13:47: 26000000 INFO @ Fri, 16 Oct 2020 06:13:49: 21000000 INFO @ Fri, 16 Oct 2020 06:13:50: 32000000 INFO @ Fri, 16 Oct 2020 06:13:53: 27000000 INFO @ Fri, 16 Oct 2020 06:13:54: 22000000 INFO @ Fri, 16 Oct 2020 06:13:56: 33000000 INFO @ Fri, 16 Oct 2020 06:13:59: 28000000 INFO @ Fri, 16 Oct 2020 06:14:00: 23000000 INFO @ Fri, 16 Oct 2020 06:14:02: 34000000 INFO @ Fri, 16 Oct 2020 06:14:05: 29000000 INFO @ Fri, 16 Oct 2020 06:14:06: 24000000 INFO @ Fri, 16 Oct 2020 06:14:08: 35000000 INFO @ Fri, 16 Oct 2020 06:14:11: 30000000 INFO @ Fri, 16 Oct 2020 06:14:12: 25000000 INFO @ Fri, 16 Oct 2020 06:14:14: 36000000 INFO @ Fri, 16 Oct 2020 06:14:17: 31000000 INFO @ Fri, 16 Oct 2020 06:14:18: 26000000 INFO @ Fri, 16 Oct 2020 06:14:19: 37000000 INFO @ Fri, 16 Oct 2020 06:14:23: 32000000 INFO @ Fri, 16 Oct 2020 06:14:24: 27000000 INFO @ Fri, 16 Oct 2020 06:14:25: 38000000 INFO @ Fri, 16 Oct 2020 06:14:28: 33000000 INFO @ Fri, 16 Oct 2020 06:14:30: 28000000 INFO @ Fri, 16 Oct 2020 06:14:31: 39000000 INFO @ Fri, 16 Oct 2020 06:14:34: 34000000 INFO @ Fri, 16 Oct 2020 06:14:35: 29000000 INFO @ Fri, 16 Oct 2020 06:14:37: 40000000 INFO @ Fri, 16 Oct 2020 06:14:40: 35000000 INFO @ Fri, 16 Oct 2020 06:14:41: 30000000 INFO @ Fri, 16 Oct 2020 06:14:43: 41000000 INFO @ Fri, 16 Oct 2020 06:14:46: 36000000 INFO @ Fri, 16 Oct 2020 06:14:47: 31000000 INFO @ Fri, 16 Oct 2020 06:14:49: 42000000 INFO @ Fri, 16 Oct 2020 06:14:51: 37000000 INFO @ Fri, 16 Oct 2020 06:14:53: 32000000 INFO @ Fri, 16 Oct 2020 06:14:54: 43000000 INFO @ Fri, 16 Oct 2020 06:14:57: 38000000 INFO @ Fri, 16 Oct 2020 06:14:59: 33000000 INFO @ Fri, 16 Oct 2020 06:15:00: 44000000 INFO @ Fri, 16 Oct 2020 06:15:03: 39000000 INFO @ Fri, 16 Oct 2020 06:15:04: 34000000 INFO @ Fri, 16 Oct 2020 06:15:06: 45000000 INFO @ Fri, 16 Oct 2020 06:15:09: 40000000 INFO @ Fri, 16 Oct 2020 06:15:10: 35000000 INFO @ Fri, 16 Oct 2020 06:15:12: 46000000 INFO @ Fri, 16 Oct 2020 06:15:14: 41000000 INFO @ Fri, 16 Oct 2020 06:15:16: 36000000 INFO @ Fri, 16 Oct 2020 06:15:18: 47000000 INFO @ Fri, 16 Oct 2020 06:15:20: 42000000 INFO @ Fri, 16 Oct 2020 06:15:22: 37000000 INFO @ Fri, 16 Oct 2020 06:15:23: 48000000 INFO @ Fri, 16 Oct 2020 06:15:26: 43000000 INFO @ Fri, 16 Oct 2020 06:15:28: 38000000 INFO @ Fri, 16 Oct 2020 06:15:29: 49000000 INFO @ Fri, 16 Oct 2020 06:15:31: 44000000 INFO @ Fri, 16 Oct 2020 06:15:33: 39000000 INFO @ Fri, 16 Oct 2020 06:15:35: 50000000 INFO @ Fri, 16 Oct 2020 06:15:37: 45000000 INFO @ Fri, 16 Oct 2020 06:15:39: 40000000 INFO @ Fri, 16 Oct 2020 06:15:41: 51000000 INFO @ Fri, 16 Oct 2020 06:15:43: 46000000 INFO @ Fri, 16 Oct 2020 06:15:45: 41000000 INFO @ Fri, 16 Oct 2020 06:15:46: 52000000 INFO @ Fri, 16 Oct 2020 06:15:48: 47000000 INFO @ Fri, 16 Oct 2020 06:15:50: 42000000 INFO @ Fri, 16 Oct 2020 06:15:52: 53000000 INFO @ Fri, 16 Oct 2020 06:15:54: 48000000 INFO @ Fri, 16 Oct 2020 06:15:56: 43000000 INFO @ Fri, 16 Oct 2020 06:15:58: 54000000 INFO @ Fri, 16 Oct 2020 06:16:00: 49000000 INFO @ Fri, 16 Oct 2020 06:16:02: 44000000 INFO @ Fri, 16 Oct 2020 06:16:03: 55000000 INFO @ Fri, 16 Oct 2020 06:16:05: 50000000 INFO @ Fri, 16 Oct 2020 06:16:07: 45000000 INFO @ Fri, 16 Oct 2020 06:16:09: 56000000 INFO @ Fri, 16 Oct 2020 06:16:11: 51000000 INFO @ Fri, 16 Oct 2020 06:16:13: 46000000 INFO @ Fri, 16 Oct 2020 06:16:15: 57000000 INFO @ Fri, 16 Oct 2020 06:16:17: 52000000 INFO @ Fri, 16 Oct 2020 06:16:19: 47000000 INFO @ Fri, 16 Oct 2020 06:16:20: 58000000 INFO @ Fri, 16 Oct 2020 06:16:23: 53000000 INFO @ Fri, 16 Oct 2020 06:16:24: 48000000 INFO @ Fri, 16 Oct 2020 06:16:26: 59000000 INFO @ Fri, 16 Oct 2020 06:16:28: 54000000 INFO @ Fri, 16 Oct 2020 06:16:30: 49000000 INFO @ Fri, 16 Oct 2020 06:16:32: 60000000 INFO @ Fri, 16 Oct 2020 06:16:34: 55000000 INFO @ Fri, 16 Oct 2020 06:16:36: 50000000 INFO @ Fri, 16 Oct 2020 06:16:38: 61000000 INFO @ Fri, 16 Oct 2020 06:16:40: 56000000 INFO @ Fri, 16 Oct 2020 06:16:41: 51000000 INFO @ Fri, 16 Oct 2020 06:16:43: 62000000 INFO @ Fri, 16 Oct 2020 06:16:45: 57000000 INFO @ Fri, 16 Oct 2020 06:16:47: 52000000 INFO @ Fri, 16 Oct 2020 06:16:49: 63000000 INFO @ Fri, 16 Oct 2020 06:16:51: 58000000 INFO @ Fri, 16 Oct 2020 06:16:53: 53000000 INFO @ Fri, 16 Oct 2020 06:16:55: 64000000 INFO @ Fri, 16 Oct 2020 06:16:56: 59000000 INFO @ Fri, 16 Oct 2020 06:16:59: 54000000 INFO @ Fri, 16 Oct 2020 06:17:01: 65000000 INFO @ Fri, 16 Oct 2020 06:17:02: 60000000 INFO @ Fri, 16 Oct 2020 06:17:04: 55000000 INFO @ Fri, 16 Oct 2020 06:17:06: 66000000 INFO @ Fri, 16 Oct 2020 06:17:08: 61000000 INFO @ Fri, 16 Oct 2020 06:17:10: 56000000 INFO @ Fri, 16 Oct 2020 06:17:12: 67000000 INFO @ Fri, 16 Oct 2020 06:17:13: 62000000 INFO @ Fri, 16 Oct 2020 06:17:16: 57000000 INFO @ Fri, 16 Oct 2020 06:17:18: 68000000 INFO @ Fri, 16 Oct 2020 06:17:19: 63000000 INFO @ Fri, 16 Oct 2020 06:17:22: 58000000 INFO @ Fri, 16 Oct 2020 06:17:24: 69000000 INFO @ Fri, 16 Oct 2020 06:17:25: 64000000 INFO @ Fri, 16 Oct 2020 06:17:27: 59000000 INFO @ Fri, 16 Oct 2020 06:17:29: 70000000 INFO @ Fri, 16 Oct 2020 06:17:30: 65000000 INFO @ Fri, 16 Oct 2020 06:17:33: 60000000 INFO @ Fri, 16 Oct 2020 06:17:35: 71000000 INFO @ Fri, 16 Oct 2020 06:17:36: 66000000 INFO @ Fri, 16 Oct 2020 06:17:39: 61000000 INFO @ Fri, 16 Oct 2020 06:17:41: 72000000 INFO @ Fri, 16 Oct 2020 06:17:42: 67000000 INFO @ Fri, 16 Oct 2020 06:17:45: 62000000 INFO @ Fri, 16 Oct 2020 06:17:47: 73000000 INFO @ Fri, 16 Oct 2020 06:17:47: 68000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 06:17:51: 63000000 INFO @ Fri, 16 Oct 2020 06:17:53: 74000000 INFO @ Fri, 16 Oct 2020 06:17:53: 69000000 INFO @ Fri, 16 Oct 2020 06:17:56: 64000000 INFO @ Fri, 16 Oct 2020 06:17:59: 75000000 INFO @ Fri, 16 Oct 2020 06:17:59: 70000000 INFO @ Fri, 16 Oct 2020 06:18:02: 65000000 INFO @ Fri, 16 Oct 2020 06:18:03: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:18:03: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:18:03: #1 total tags in treatment: 75557093 INFO @ Fri, 16 Oct 2020 06:18:03: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:18:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:18:04: #1 tags after filtering in treatment: 75557040 INFO @ Fri, 16 Oct 2020 06:18:04: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:18:04: #1 finished! INFO @ Fri, 16 Oct 2020 06:18:04: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:18:04: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:18:06: 71000000 INFO @ Fri, 16 Oct 2020 06:18:08: 66000000 INFO @ Fri, 16 Oct 2020 06:18:11: #2 number of paired peaks: 33635 INFO @ Fri, 16 Oct 2020 06:18:11: start model_add_line... INFO @ Fri, 16 Oct 2020 06:18:12: start X-correlation... INFO @ Fri, 16 Oct 2020 06:18:12: end of X-cor INFO @ Fri, 16 Oct 2020 06:18:12: #2 finished! INFO @ Fri, 16 Oct 2020 06:18:12: #2 predicted fragment length is 223 bps INFO @ Fri, 16 Oct 2020 06:18:12: #2 alternative fragment length(s) may be 4,223 bps INFO @ Fri, 16 Oct 2020 06:18:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.05_model.r INFO @ Fri, 16 Oct 2020 06:18:12: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:18:12: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:18:12: 72000000 INFO @ Fri, 16 Oct 2020 06:18:14: 67000000 INFO @ Fri, 16 Oct 2020 06:18:18: 73000000 INFO @ Fri, 16 Oct 2020 06:18:20: 68000000 INFO @ Fri, 16 Oct 2020 06:18:23: 74000000 INFO @ Fri, 16 Oct 2020 06:18:25: 69000000 INFO @ Fri, 16 Oct 2020 06:18:29: 75000000 INFO @ Fri, 16 Oct 2020 06:18:31: 70000000 INFO @ Fri, 16 Oct 2020 06:18:33: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:18:33: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:18:33: #1 total tags in treatment: 75557093 INFO @ Fri, 16 Oct 2020 06:18:33: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:18:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:18:34: #1 tags after filtering in treatment: 75557040 INFO @ Fri, 16 Oct 2020 06:18:34: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:18:34: #1 finished! INFO @ Fri, 16 Oct 2020 06:18:34: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:18:34: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:18:36: 71000000 INFO @ Fri, 16 Oct 2020 06:18:41: #2 number of paired peaks: 33635 INFO @ Fri, 16 Oct 2020 06:18:41: start model_add_line... INFO @ Fri, 16 Oct 2020 06:18:42: 72000000 INFO @ Fri, 16 Oct 2020 06:18:42: start X-correlation... INFO @ Fri, 16 Oct 2020 06:18:42: end of X-cor INFO @ Fri, 16 Oct 2020 06:18:42: #2 finished! INFO @ Fri, 16 Oct 2020 06:18:42: #2 predicted fragment length is 223 bps INFO @ Fri, 16 Oct 2020 06:18:42: #2 alternative fragment length(s) may be 4,223 bps INFO @ Fri, 16 Oct 2020 06:18:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.10_model.r INFO @ Fri, 16 Oct 2020 06:18:42: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:18:42: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 06:18:47: 73000000 INFO @ Fri, 16 Oct 2020 06:18:52: 74000000 INFO @ Fri, 16 Oct 2020 06:18:58: 75000000 INFO @ Fri, 16 Oct 2020 06:19:01: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 06:19:01: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 06:19:01: #1 total tags in treatment: 75557093 INFO @ Fri, 16 Oct 2020 06:19:01: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 06:19:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 06:19:02: #1 tags after filtering in treatment: 75557040 INFO @ Fri, 16 Oct 2020 06:19:02: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 06:19:02: #1 finished! INFO @ Fri, 16 Oct 2020 06:19:02: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 06:19:02: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 06:19:09: #2 number of paired peaks: 33635 INFO @ Fri, 16 Oct 2020 06:19:09: start model_add_line... INFO @ Fri, 16 Oct 2020 06:19:10: start X-correlation... INFO @ Fri, 16 Oct 2020 06:19:10: end of X-cor INFO @ Fri, 16 Oct 2020 06:19:10: #2 finished! INFO @ Fri, 16 Oct 2020 06:19:10: #2 predicted fragment length is 223 bps INFO @ Fri, 16 Oct 2020 06:19:10: #2 alternative fragment length(s) may be 4,223 bps INFO @ Fri, 16 Oct 2020 06:19:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.20_model.r INFO @ Fri, 16 Oct 2020 06:19:10: #3 Call peaks... INFO @ Fri, 16 Oct 2020 06:19:10: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 06:20:56: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:21:30: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:21:54: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 06:22:36: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.05_peaks.xls INFO @ Fri, 16 Oct 2020 06:22:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:22:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.05_summits.bed INFO @ Fri, 16 Oct 2020 06:22:36: Done! pass1 - making usageList (126 chroms): 5 millis pass2 - checking and writing primary data (30570 records, 4 fields): 30 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:23:08: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.10_peaks.xls INFO @ Fri, 16 Oct 2020 06:23:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:23:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.10_summits.bed INFO @ Fri, 16 Oct 2020 06:23:08: Done! pass1 - making usageList (78 chroms): 2 millis pass2 - checking and writing primary data (6676 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:23:36: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.20_peaks.xls INFO @ Fri, 16 Oct 2020 06:23:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:23:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745114/ERX2745114.20_summits.bed INFO @ Fri, 16 Oct 2020 06:23:36: Done! pass1 - making usageList (48 chroms): 0 millis pass2 - checking and writing primary data (800 records, 4 fields): 4 millis CompletedMACS2peakCalling