Job ID = 10223620 SRX = ERX2745113 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T18:59:02 prefetch.2.10.7: 1) Downloading 'ERR2731888'... 2020-10-15T18:59:02 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T19:01:26 prefetch.2.10.7: HTTPS download succeed 2020-10-15T19:01:26 prefetch.2.10.7: 1) 'ERR2731888' was downloaded successfully Read 123559630 spots for ERR2731888/ERR2731888.sra Written 123559630 spots for ERR2731888/ERR2731888.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:23:08 123559630 reads; of these: 123559630 (100.00%) were unpaired; of these: 3073699 (2.49%) aligned 0 times 99625073 (80.63%) aligned exactly 1 time 20860858 (16.88%) aligned >1 times 97.51% overall alignment rate Time searching: 01:23:13 Overall time: 01:23:13 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 52 files... [bam_rmdupse_core] 42223094 / 120485931 = 0.3504 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:47:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:47:38: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:47:38: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:47:44: 1000000 INFO @ Fri, 16 Oct 2020 05:47:49: 2000000 INFO @ Fri, 16 Oct 2020 05:47:54: 3000000 INFO @ Fri, 16 Oct 2020 05:47:59: 4000000 INFO @ Fri, 16 Oct 2020 05:48:04: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:48:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:48:08: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:48:08: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:48:09: 6000000 INFO @ Fri, 16 Oct 2020 05:48:14: 1000000 INFO @ Fri, 16 Oct 2020 05:48:15: 7000000 INFO @ Fri, 16 Oct 2020 05:48:20: 2000000 INFO @ Fri, 16 Oct 2020 05:48:21: 8000000 INFO @ Fri, 16 Oct 2020 05:48:25: 3000000 INFO @ Fri, 16 Oct 2020 05:48:26: 9000000 INFO @ Fri, 16 Oct 2020 05:48:31: 4000000 INFO @ Fri, 16 Oct 2020 05:48:32: 10000000 INFO @ Fri, 16 Oct 2020 05:48:36: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:48:37: 11000000 INFO @ Fri, 16 Oct 2020 05:48:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:48:38: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:48:38: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:48:42: 6000000 INFO @ Fri, 16 Oct 2020 05:48:43: 12000000 INFO @ Fri, 16 Oct 2020 05:48:44: 1000000 INFO @ Fri, 16 Oct 2020 05:48:47: 7000000 INFO @ Fri, 16 Oct 2020 05:48:48: 13000000 INFO @ Fri, 16 Oct 2020 05:48:50: 2000000 INFO @ Fri, 16 Oct 2020 05:48:53: 8000000 INFO @ Fri, 16 Oct 2020 05:48:54: 14000000 INFO @ Fri, 16 Oct 2020 05:48:55: 3000000 INFO @ Fri, 16 Oct 2020 05:48:58: 9000000 INFO @ Fri, 16 Oct 2020 05:48:59: 15000000 INFO @ Fri, 16 Oct 2020 05:49:00: 4000000 INFO @ Fri, 16 Oct 2020 05:49:04: 10000000 INFO @ Fri, 16 Oct 2020 05:49:05: 16000000 INFO @ Fri, 16 Oct 2020 05:49:06: 5000000 INFO @ Fri, 16 Oct 2020 05:49:09: 11000000 INFO @ Fri, 16 Oct 2020 05:49:10: 17000000 INFO @ Fri, 16 Oct 2020 05:49:11: 6000000 INFO @ Fri, 16 Oct 2020 05:49:15: 12000000 INFO @ Fri, 16 Oct 2020 05:49:16: 18000000 INFO @ Fri, 16 Oct 2020 05:49:17: 7000000 INFO @ Fri, 16 Oct 2020 05:49:20: 13000000 INFO @ Fri, 16 Oct 2020 05:49:21: 19000000 INFO @ Fri, 16 Oct 2020 05:49:23: 8000000 INFO @ Fri, 16 Oct 2020 05:49:26: 14000000 INFO @ Fri, 16 Oct 2020 05:49:26: 20000000 INFO @ Fri, 16 Oct 2020 05:49:28: 9000000 INFO @ Fri, 16 Oct 2020 05:49:32: 15000000 INFO @ Fri, 16 Oct 2020 05:49:32: 21000000 INFO @ Fri, 16 Oct 2020 05:49:34: 10000000 INFO @ Fri, 16 Oct 2020 05:49:37: 22000000 INFO @ Fri, 16 Oct 2020 05:49:37: 16000000 INFO @ Fri, 16 Oct 2020 05:49:39: 11000000 INFO @ Fri, 16 Oct 2020 05:49:43: 23000000 INFO @ Fri, 16 Oct 2020 05:49:43: 17000000 INFO @ Fri, 16 Oct 2020 05:49:45: 12000000 INFO @ Fri, 16 Oct 2020 05:49:48: 24000000 INFO @ Fri, 16 Oct 2020 05:49:49: 18000000 INFO @ Fri, 16 Oct 2020 05:49:51: 13000000 INFO @ Fri, 16 Oct 2020 05:49:54: 25000000 INFO @ Fri, 16 Oct 2020 05:49:55: 19000000 INFO @ Fri, 16 Oct 2020 05:49:57: 14000000 INFO @ Fri, 16 Oct 2020 05:49:59: 26000000 INFO @ Fri, 16 Oct 2020 05:50:01: 20000000 INFO @ Fri, 16 Oct 2020 05:50:03: 15000000 INFO @ Fri, 16 Oct 2020 05:50:05: 27000000 INFO @ Fri, 16 Oct 2020 05:50:07: 21000000 INFO @ Fri, 16 Oct 2020 05:50:08: 16000000 INFO @ Fri, 16 Oct 2020 05:50:11: 28000000 INFO @ Fri, 16 Oct 2020 05:50:12: 22000000 INFO @ Fri, 16 Oct 2020 05:50:14: 17000000 INFO @ Fri, 16 Oct 2020 05:50:16: 29000000 INFO @ Fri, 16 Oct 2020 05:50:18: 23000000 INFO @ Fri, 16 Oct 2020 05:50:19: 18000000 INFO @ Fri, 16 Oct 2020 05:50:22: 30000000 INFO @ Fri, 16 Oct 2020 05:50:24: 24000000 INFO @ Fri, 16 Oct 2020 05:50:25: 19000000 INFO @ Fri, 16 Oct 2020 05:50:27: 31000000 INFO @ Fri, 16 Oct 2020 05:50:30: 25000000 INFO @ Fri, 16 Oct 2020 05:50:30: 20000000 INFO @ Fri, 16 Oct 2020 05:50:33: 32000000 INFO @ Fri, 16 Oct 2020 05:50:35: 26000000 INFO @ Fri, 16 Oct 2020 05:50:36: 21000000 INFO @ Fri, 16 Oct 2020 05:50:38: 33000000 INFO @ Fri, 16 Oct 2020 05:50:41: 27000000 INFO @ Fri, 16 Oct 2020 05:50:41: 22000000 INFO @ Fri, 16 Oct 2020 05:50:44: 34000000 INFO @ Fri, 16 Oct 2020 05:50:46: 28000000 INFO @ Fri, 16 Oct 2020 05:50:47: 23000000 INFO @ Fri, 16 Oct 2020 05:50:50: 35000000 INFO @ Fri, 16 Oct 2020 05:50:52: 24000000 INFO @ Fri, 16 Oct 2020 05:50:52: 29000000 INFO @ Fri, 16 Oct 2020 05:50:56: 36000000 INFO @ Fri, 16 Oct 2020 05:50:58: 25000000 INFO @ Fri, 16 Oct 2020 05:50:58: 30000000 INFO @ Fri, 16 Oct 2020 05:51:01: 37000000 INFO @ Fri, 16 Oct 2020 05:51:03: 26000000 INFO @ Fri, 16 Oct 2020 05:51:04: 31000000 INFO @ Fri, 16 Oct 2020 05:51:07: 38000000 INFO @ Fri, 16 Oct 2020 05:51:08: 27000000 INFO @ Fri, 16 Oct 2020 05:51:10: 32000000 INFO @ Fri, 16 Oct 2020 05:51:12: 39000000 INFO @ Fri, 16 Oct 2020 05:51:14: 28000000 INFO @ Fri, 16 Oct 2020 05:51:15: 33000000 INFO @ Fri, 16 Oct 2020 05:51:17: 40000000 INFO @ Fri, 16 Oct 2020 05:51:19: 29000000 INFO @ Fri, 16 Oct 2020 05:51:20: 34000000 INFO @ Fri, 16 Oct 2020 05:51:23: 41000000 INFO @ Fri, 16 Oct 2020 05:51:25: 30000000 INFO @ Fri, 16 Oct 2020 05:51:26: 35000000 INFO @ Fri, 16 Oct 2020 05:51:28: 42000000 INFO @ Fri, 16 Oct 2020 05:51:30: 31000000 INFO @ Fri, 16 Oct 2020 05:51:32: 36000000 INFO @ Fri, 16 Oct 2020 05:51:33: 43000000 INFO @ Fri, 16 Oct 2020 05:51:35: 32000000 INFO @ Fri, 16 Oct 2020 05:51:37: 37000000 INFO @ Fri, 16 Oct 2020 05:51:38: 44000000 INFO @ Fri, 16 Oct 2020 05:51:41: 33000000 INFO @ Fri, 16 Oct 2020 05:51:43: 38000000 INFO @ Fri, 16 Oct 2020 05:51:44: 45000000 INFO @ Fri, 16 Oct 2020 05:51:46: 34000000 INFO @ Fri, 16 Oct 2020 05:51:48: 39000000 INFO @ Fri, 16 Oct 2020 05:51:49: 46000000 INFO @ Fri, 16 Oct 2020 05:51:52: 35000000 INFO @ Fri, 16 Oct 2020 05:51:53: 40000000 INFO @ Fri, 16 Oct 2020 05:51:54: 47000000 INFO @ Fri, 16 Oct 2020 05:51:57: 36000000 INFO @ Fri, 16 Oct 2020 05:51:58: 41000000 INFO @ Fri, 16 Oct 2020 05:51:59: 48000000 INFO @ Fri, 16 Oct 2020 05:52:02: 37000000 INFO @ Fri, 16 Oct 2020 05:52:04: 42000000 INFO @ Fri, 16 Oct 2020 05:52:05: 49000000 INFO @ Fri, 16 Oct 2020 05:52:08: 38000000 INFO @ Fri, 16 Oct 2020 05:52:09: 43000000 INFO @ Fri, 16 Oct 2020 05:52:10: 50000000 INFO @ Fri, 16 Oct 2020 05:52:13: 39000000 INFO @ Fri, 16 Oct 2020 05:52:14: 44000000 INFO @ Fri, 16 Oct 2020 05:52:15: 51000000 INFO @ Fri, 16 Oct 2020 05:52:18: 40000000 INFO @ Fri, 16 Oct 2020 05:52:19: 45000000 INFO @ Fri, 16 Oct 2020 05:52:21: 52000000 INFO @ Fri, 16 Oct 2020 05:52:23: 41000000 INFO @ Fri, 16 Oct 2020 05:52:25: 46000000 INFO @ Fri, 16 Oct 2020 05:52:26: 53000000 INFO @ Fri, 16 Oct 2020 05:52:29: 42000000 INFO @ Fri, 16 Oct 2020 05:52:30: 47000000 INFO @ Fri, 16 Oct 2020 05:52:31: 54000000 INFO @ Fri, 16 Oct 2020 05:52:34: 43000000 INFO @ Fri, 16 Oct 2020 05:52:35: 48000000 INFO @ Fri, 16 Oct 2020 05:52:37: 55000000 INFO @ Fri, 16 Oct 2020 05:52:39: 44000000 INFO @ Fri, 16 Oct 2020 05:52:41: 49000000 INFO @ Fri, 16 Oct 2020 05:52:42: 56000000 INFO @ Fri, 16 Oct 2020 05:52:44: 45000000 INFO @ Fri, 16 Oct 2020 05:52:46: 50000000 INFO @ Fri, 16 Oct 2020 05:52:48: 57000000 INFO @ Fri, 16 Oct 2020 05:52:49: 46000000 INFO @ Fri, 16 Oct 2020 05:52:51: 51000000 INFO @ Fri, 16 Oct 2020 05:52:53: 58000000 INFO @ Fri, 16 Oct 2020 05:52:55: 47000000 INFO @ Fri, 16 Oct 2020 05:52:57: 52000000 INFO @ Fri, 16 Oct 2020 05:52:58: 59000000 INFO @ Fri, 16 Oct 2020 05:53:00: 48000000 INFO @ Fri, 16 Oct 2020 05:53:02: 53000000 INFO @ Fri, 16 Oct 2020 05:53:03: 60000000 INFO @ Fri, 16 Oct 2020 05:53:05: 49000000 INFO @ Fri, 16 Oct 2020 05:53:07: 54000000 INFO @ Fri, 16 Oct 2020 05:53:09: 61000000 INFO @ Fri, 16 Oct 2020 05:53:10: 50000000 INFO @ Fri, 16 Oct 2020 05:53:13: 55000000 INFO @ Fri, 16 Oct 2020 05:53:14: 62000000 INFO @ Fri, 16 Oct 2020 05:53:16: 51000000 INFO @ Fri, 16 Oct 2020 05:53:18: 56000000 INFO @ Fri, 16 Oct 2020 05:53:19: 63000000 INFO @ Fri, 16 Oct 2020 05:53:21: 52000000 INFO @ Fri, 16 Oct 2020 05:53:23: 57000000 INFO @ Fri, 16 Oct 2020 05:53:24: 64000000 INFO @ Fri, 16 Oct 2020 05:53:26: 53000000 INFO @ Fri, 16 Oct 2020 05:53:28: 58000000 INFO @ Fri, 16 Oct 2020 05:53:30: 65000000 INFO @ Fri, 16 Oct 2020 05:53:31: 54000000 INFO @ Fri, 16 Oct 2020 05:53:34: 59000000 INFO @ Fri, 16 Oct 2020 05:53:35: 66000000 INFO @ Fri, 16 Oct 2020 05:53:37: 55000000 INFO @ Fri, 16 Oct 2020 05:53:39: 60000000 INFO @ Fri, 16 Oct 2020 05:53:40: 67000000 INFO @ Fri, 16 Oct 2020 05:53:42: 56000000 INFO @ Fri, 16 Oct 2020 05:53:44: 61000000 INFO @ Fri, 16 Oct 2020 05:53:45: 68000000 INFO @ Fri, 16 Oct 2020 05:53:47: 57000000 INFO @ Fri, 16 Oct 2020 05:53:49: 62000000 INFO @ Fri, 16 Oct 2020 05:53:51: 69000000 INFO @ Fri, 16 Oct 2020 05:53:52: 58000000 INFO @ Fri, 16 Oct 2020 05:53:55: 63000000 INFO @ Fri, 16 Oct 2020 05:53:56: 70000000 INFO @ Fri, 16 Oct 2020 05:53:57: 59000000 INFO @ Fri, 16 Oct 2020 05:54:00: 64000000 INFO @ Fri, 16 Oct 2020 05:54:01: 71000000 INFO @ Fri, 16 Oct 2020 05:54:03: 60000000 INFO @ Fri, 16 Oct 2020 05:54:05: 65000000 INFO @ Fri, 16 Oct 2020 05:54:07: 72000000 INFO @ Fri, 16 Oct 2020 05:54:08: 61000000 INFO @ Fri, 16 Oct 2020 05:54:11: 66000000 INFO @ Fri, 16 Oct 2020 05:54:12: 73000000 INFO @ Fri, 16 Oct 2020 05:54:13: 62000000 INFO @ Fri, 16 Oct 2020 05:54:16: 67000000 INFO @ Fri, 16 Oct 2020 05:54:17: 74000000 INFO @ Fri, 16 Oct 2020 05:54:18: 63000000 INFO @ Fri, 16 Oct 2020 05:54:21: 68000000 INFO @ Fri, 16 Oct 2020 05:54:22: 75000000 INFO @ Fri, 16 Oct 2020 05:54:23: 64000000 INFO @ Fri, 16 Oct 2020 05:54:26: 69000000 INFO @ Fri, 16 Oct 2020 05:54:28: 76000000 INFO @ Fri, 16 Oct 2020 05:54:28: 65000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 05:54:32: 70000000 INFO @ Fri, 16 Oct 2020 05:54:33: 77000000 INFO @ Fri, 16 Oct 2020 05:54:33: 66000000 INFO @ Fri, 16 Oct 2020 05:54:37: 71000000 INFO @ Fri, 16 Oct 2020 05:54:39: 67000000 INFO @ Fri, 16 Oct 2020 05:54:39: 78000000 INFO @ Fri, 16 Oct 2020 05:54:41: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:54:41: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:54:41: #1 total tags in treatment: 78262837 INFO @ Fri, 16 Oct 2020 05:54:41: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:54:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:54:42: #1 tags after filtering in treatment: 78262772 INFO @ Fri, 16 Oct 2020 05:54:42: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:54:42: #1 finished! INFO @ Fri, 16 Oct 2020 05:54:42: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:54:42: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:54:42: 72000000 INFO @ Fri, 16 Oct 2020 05:54:44: 68000000 INFO @ Fri, 16 Oct 2020 05:54:47: 73000000 INFO @ Fri, 16 Oct 2020 05:54:49: 69000000 INFO @ Fri, 16 Oct 2020 05:54:50: #2 number of paired peaks: 53126 INFO @ Fri, 16 Oct 2020 05:54:50: start model_add_line... INFO @ Fri, 16 Oct 2020 05:54:51: start X-correlation... INFO @ Fri, 16 Oct 2020 05:54:51: end of X-cor INFO @ Fri, 16 Oct 2020 05:54:51: #2 finished! INFO @ Fri, 16 Oct 2020 05:54:51: #2 predicted fragment length is 217 bps INFO @ Fri, 16 Oct 2020 05:54:51: #2 alternative fragment length(s) may be 4,217 bps INFO @ Fri, 16 Oct 2020 05:54:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.05_model.r INFO @ Fri, 16 Oct 2020 05:54:51: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:54:51: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 05:54:53: 74000000 INFO @ Fri, 16 Oct 2020 05:54:54: 70000000 INFO @ Fri, 16 Oct 2020 05:54:58: 75000000 INFO @ Fri, 16 Oct 2020 05:54:59: 71000000 INFO @ Fri, 16 Oct 2020 05:55:03: 76000000 INFO @ Fri, 16 Oct 2020 05:55:04: 72000000 INFO @ Fri, 16 Oct 2020 05:55:08: 77000000 INFO @ Fri, 16 Oct 2020 05:55:10: 73000000 INFO @ Fri, 16 Oct 2020 05:55:13: 78000000 INFO @ Fri, 16 Oct 2020 05:55:15: 74000000 INFO @ Fri, 16 Oct 2020 05:55:15: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:55:15: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:55:15: #1 total tags in treatment: 78262837 INFO @ Fri, 16 Oct 2020 05:55:15: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:55:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:55:17: #1 tags after filtering in treatment: 78262772 INFO @ Fri, 16 Oct 2020 05:55:17: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:55:17: #1 finished! INFO @ Fri, 16 Oct 2020 05:55:17: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:55:17: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:55:20: 75000000 INFO @ Fri, 16 Oct 2020 05:55:25: #2 number of paired peaks: 53126 INFO @ Fri, 16 Oct 2020 05:55:25: start model_add_line... INFO @ Fri, 16 Oct 2020 05:55:25: 76000000 INFO @ Fri, 16 Oct 2020 05:55:25: start X-correlation... INFO @ Fri, 16 Oct 2020 05:55:25: end of X-cor INFO @ Fri, 16 Oct 2020 05:55:25: #2 finished! INFO @ Fri, 16 Oct 2020 05:55:25: #2 predicted fragment length is 217 bps INFO @ Fri, 16 Oct 2020 05:55:25: #2 alternative fragment length(s) may be 4,217 bps INFO @ Fri, 16 Oct 2020 05:55:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.10_model.r INFO @ Fri, 16 Oct 2020 05:55:25: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:55:25: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 05:55:30: 77000000 INFO @ Fri, 16 Oct 2020 05:55:35: 78000000 INFO @ Fri, 16 Oct 2020 05:55:36: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:55:36: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:55:36: #1 total tags in treatment: 78262837 INFO @ Fri, 16 Oct 2020 05:55:36: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:55:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:55:38: #1 tags after filtering in treatment: 78262772 INFO @ Fri, 16 Oct 2020 05:55:38: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:55:38: #1 finished! INFO @ Fri, 16 Oct 2020 05:55:38: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:55:38: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:55:45: #2 number of paired peaks: 53126 INFO @ Fri, 16 Oct 2020 05:55:45: start model_add_line... INFO @ Fri, 16 Oct 2020 05:55:46: start X-correlation... INFO @ Fri, 16 Oct 2020 05:55:46: end of X-cor INFO @ Fri, 16 Oct 2020 05:55:46: #2 finished! INFO @ Fri, 16 Oct 2020 05:55:46: #2 predicted fragment length is 217 bps INFO @ Fri, 16 Oct 2020 05:55:46: #2 alternative fragment length(s) may be 4,217 bps INFO @ Fri, 16 Oct 2020 05:55:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.20_model.r INFO @ Fri, 16 Oct 2020 05:55:46: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:55:46: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 05:57:53: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:58:27: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:58:38: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:59:32: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.05_peaks.xls INFO @ Fri, 16 Oct 2020 05:59:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 05:59:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.05_summits.bed INFO @ Fri, 16 Oct 2020 05:59:32: Done! pass1 - making usageList (154 chroms): 6 millis pass2 - checking and writing primary data (41883 records, 4 fields): 39 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:00:04: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.10_peaks.xls INFO @ Fri, 16 Oct 2020 06:00:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:00:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.10_summits.bed INFO @ Fri, 16 Oct 2020 06:00:04: Done! pass1 - making usageList (90 chroms): 2 millis pass2 - checking and writing primary data (12114 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 06:00:16: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.20_peaks.xls INFO @ Fri, 16 Oct 2020 06:00:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 06:00:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745113/ERX2745113.20_summits.bed INFO @ Fri, 16 Oct 2020 06:00:16: Done! pass1 - making usageList (56 chroms): 1 millis pass2 - checking and writing primary data (1714 records, 4 fields): 4 millis CompletedMACS2peakCalling