Job ID = 10223618 SRX = ERX2745111 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T18:57:48 prefetch.2.10.7: 1) Downloading 'ERR2731886'... 2020-10-15T18:57:48 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T19:01:08 prefetch.2.10.7: HTTPS download succeed 2020-10-15T19:01:08 prefetch.2.10.7: 1) 'ERR2731886' was downloaded successfully Read 111754024 spots for ERR2731886/ERR2731886.sra Written 111754024 spots for ERR2731886/ERR2731886.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:13:36 111754024 reads; of these: 111754024 (100.00%) were unpaired; of these: 2599632 (2.33%) aligned 0 times 84983107 (76.04%) aligned exactly 1 time 24171285 (21.63%) aligned >1 times 97.67% overall alignment rate Time searching: 01:13:41 Overall time: 01:13:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 48 files... [bam_rmdupse_core] 27970067 / 109154392 = 0.2562 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:37:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:37:12: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:37:12: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:37:19: 1000000 INFO @ Fri, 16 Oct 2020 05:37:26: 2000000 INFO @ Fri, 16 Oct 2020 05:37:33: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:37:40: 4000000 INFO @ Fri, 16 Oct 2020 05:37:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:37:42: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:37:42: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:37:47: 5000000 INFO @ Fri, 16 Oct 2020 05:37:49: 1000000 INFO @ Fri, 16 Oct 2020 05:37:55: 6000000 INFO @ Fri, 16 Oct 2020 05:37:56: 2000000 INFO @ Fri, 16 Oct 2020 05:38:02: 7000000 INFO @ Fri, 16 Oct 2020 05:38:03: 3000000 INFO @ Fri, 16 Oct 2020 05:38:10: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:38:10: 4000000 INFO @ Fri, 16 Oct 2020 05:38:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:38:12: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:38:12: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:38:17: 9000000 INFO @ Fri, 16 Oct 2020 05:38:18: 5000000 INFO @ Fri, 16 Oct 2020 05:38:19: 1000000 INFO @ Fri, 16 Oct 2020 05:38:25: 10000000 INFO @ Fri, 16 Oct 2020 05:38:25: 6000000 INFO @ Fri, 16 Oct 2020 05:38:26: 2000000 INFO @ Fri, 16 Oct 2020 05:38:32: 11000000 INFO @ Fri, 16 Oct 2020 05:38:33: 7000000 INFO @ Fri, 16 Oct 2020 05:38:34: 3000000 INFO @ Fri, 16 Oct 2020 05:38:40: 12000000 INFO @ Fri, 16 Oct 2020 05:38:41: 8000000 INFO @ Fri, 16 Oct 2020 05:38:41: 4000000 INFO @ Fri, 16 Oct 2020 05:38:47: 13000000 INFO @ Fri, 16 Oct 2020 05:38:48: 9000000 INFO @ Fri, 16 Oct 2020 05:38:48: 5000000 INFO @ Fri, 16 Oct 2020 05:38:55: 14000000 INFO @ Fri, 16 Oct 2020 05:38:56: 6000000 INFO @ Fri, 16 Oct 2020 05:38:56: 10000000 INFO @ Fri, 16 Oct 2020 05:39:03: 15000000 INFO @ Fri, 16 Oct 2020 05:39:03: 7000000 INFO @ Fri, 16 Oct 2020 05:39:03: 11000000 INFO @ Fri, 16 Oct 2020 05:39:10: 16000000 INFO @ Fri, 16 Oct 2020 05:39:10: 8000000 INFO @ Fri, 16 Oct 2020 05:39:11: 12000000 INFO @ Fri, 16 Oct 2020 05:39:17: 9000000 INFO @ Fri, 16 Oct 2020 05:39:18: 17000000 INFO @ Fri, 16 Oct 2020 05:39:19: 13000000 INFO @ Fri, 16 Oct 2020 05:39:25: 10000000 INFO @ Fri, 16 Oct 2020 05:39:25: 18000000 INFO @ Fri, 16 Oct 2020 05:39:26: 14000000 INFO @ Fri, 16 Oct 2020 05:39:32: 11000000 INFO @ Fri, 16 Oct 2020 05:39:33: 19000000 INFO @ Fri, 16 Oct 2020 05:39:34: 15000000 INFO @ Fri, 16 Oct 2020 05:39:39: 12000000 INFO @ Fri, 16 Oct 2020 05:39:40: 20000000 INFO @ Fri, 16 Oct 2020 05:39:41: 16000000 INFO @ Fri, 16 Oct 2020 05:39:47: 13000000 INFO @ Fri, 16 Oct 2020 05:39:48: 21000000 INFO @ Fri, 16 Oct 2020 05:39:49: 17000000 INFO @ Fri, 16 Oct 2020 05:39:54: 14000000 INFO @ Fri, 16 Oct 2020 05:39:55: 22000000 INFO @ Fri, 16 Oct 2020 05:39:57: 18000000 INFO @ Fri, 16 Oct 2020 05:40:01: 15000000 INFO @ Fri, 16 Oct 2020 05:40:03: 23000000 INFO @ Fri, 16 Oct 2020 05:40:04: 19000000 INFO @ Fri, 16 Oct 2020 05:40:09: 16000000 INFO @ Fri, 16 Oct 2020 05:40:10: 24000000 INFO @ Fri, 16 Oct 2020 05:40:12: 20000000 INFO @ Fri, 16 Oct 2020 05:40:16: 17000000 INFO @ Fri, 16 Oct 2020 05:40:18: 25000000 INFO @ Fri, 16 Oct 2020 05:40:19: 21000000 INFO @ Fri, 16 Oct 2020 05:40:23: 18000000 INFO @ Fri, 16 Oct 2020 05:40:25: 26000000 INFO @ Fri, 16 Oct 2020 05:40:27: 22000000 INFO @ Fri, 16 Oct 2020 05:40:31: 19000000 INFO @ Fri, 16 Oct 2020 05:40:33: 27000000 INFO @ Fri, 16 Oct 2020 05:40:35: 23000000 INFO @ Fri, 16 Oct 2020 05:40:38: 20000000 INFO @ Fri, 16 Oct 2020 05:40:40: 28000000 INFO @ Fri, 16 Oct 2020 05:40:42: 24000000 INFO @ Fri, 16 Oct 2020 05:40:46: 21000000 INFO @ Fri, 16 Oct 2020 05:40:48: 29000000 INFO @ Fri, 16 Oct 2020 05:40:49: 25000000 INFO @ Fri, 16 Oct 2020 05:40:54: 22000000 INFO @ Fri, 16 Oct 2020 05:40:55: 30000000 INFO @ Fri, 16 Oct 2020 05:40:57: 26000000 INFO @ Fri, 16 Oct 2020 05:41:01: 23000000 INFO @ Fri, 16 Oct 2020 05:41:03: 31000000 INFO @ Fri, 16 Oct 2020 05:41:04: 27000000 INFO @ Fri, 16 Oct 2020 05:41:09: 24000000 INFO @ Fri, 16 Oct 2020 05:41:11: 32000000 INFO @ Fri, 16 Oct 2020 05:41:11: 28000000 INFO @ Fri, 16 Oct 2020 05:41:17: 25000000 INFO @ Fri, 16 Oct 2020 05:41:18: 33000000 INFO @ Fri, 16 Oct 2020 05:41:19: 29000000 INFO @ Fri, 16 Oct 2020 05:41:24: 26000000 INFO @ Fri, 16 Oct 2020 05:41:26: 34000000 INFO @ Fri, 16 Oct 2020 05:41:27: 30000000 INFO @ Fri, 16 Oct 2020 05:41:32: 27000000 INFO @ Fri, 16 Oct 2020 05:41:33: 35000000 INFO @ Fri, 16 Oct 2020 05:41:35: 31000000 INFO @ Fri, 16 Oct 2020 05:41:40: 28000000 INFO @ Fri, 16 Oct 2020 05:41:41: 36000000 INFO @ Fri, 16 Oct 2020 05:41:42: 32000000 INFO @ Fri, 16 Oct 2020 05:41:47: 29000000 INFO @ Fri, 16 Oct 2020 05:41:49: 37000000 INFO @ Fri, 16 Oct 2020 05:41:50: 33000000 INFO @ Fri, 16 Oct 2020 05:41:55: 30000000 INFO @ Fri, 16 Oct 2020 05:41:57: 38000000 INFO @ Fri, 16 Oct 2020 05:41:58: 34000000 INFO @ Fri, 16 Oct 2020 05:42:02: 31000000 INFO @ Fri, 16 Oct 2020 05:42:04: 39000000 INFO @ Fri, 16 Oct 2020 05:42:06: 35000000 INFO @ Fri, 16 Oct 2020 05:42:10: 32000000 INFO @ Fri, 16 Oct 2020 05:42:12: 40000000 INFO @ Fri, 16 Oct 2020 05:42:13: 36000000 INFO @ Fri, 16 Oct 2020 05:42:17: 33000000 INFO @ Fri, 16 Oct 2020 05:42:20: 41000000 INFO @ Fri, 16 Oct 2020 05:42:21: 37000000 INFO @ Fri, 16 Oct 2020 05:42:24: 34000000 INFO @ Fri, 16 Oct 2020 05:42:27: 42000000 INFO @ Fri, 16 Oct 2020 05:42:29: 38000000 INFO @ Fri, 16 Oct 2020 05:42:32: 35000000 INFO @ Fri, 16 Oct 2020 05:42:35: 43000000 INFO @ Fri, 16 Oct 2020 05:42:36: 39000000 INFO @ Fri, 16 Oct 2020 05:42:39: 36000000 INFO @ Fri, 16 Oct 2020 05:42:42: 44000000 INFO @ Fri, 16 Oct 2020 05:42:44: 40000000 INFO @ Fri, 16 Oct 2020 05:42:46: 37000000 INFO @ Fri, 16 Oct 2020 05:42:50: 45000000 INFO @ Fri, 16 Oct 2020 05:42:52: 41000000 INFO @ Fri, 16 Oct 2020 05:42:54: 38000000 INFO @ Fri, 16 Oct 2020 05:42:57: 46000000 INFO @ Fri, 16 Oct 2020 05:42:59: 42000000 INFO @ Fri, 16 Oct 2020 05:43:01: 39000000 INFO @ Fri, 16 Oct 2020 05:43:04: 47000000 INFO @ Fri, 16 Oct 2020 05:43:07: 43000000 INFO @ Fri, 16 Oct 2020 05:43:09: 40000000 INFO @ Fri, 16 Oct 2020 05:43:12: 48000000 INFO @ Fri, 16 Oct 2020 05:43:15: 44000000 INFO @ Fri, 16 Oct 2020 05:43:16: 41000000 INFO @ Fri, 16 Oct 2020 05:43:19: 49000000 INFO @ Fri, 16 Oct 2020 05:43:22: 45000000 INFO @ Fri, 16 Oct 2020 05:43:23: 42000000 INFO @ Fri, 16 Oct 2020 05:43:26: 50000000 INFO @ Fri, 16 Oct 2020 05:43:30: 46000000 INFO @ Fri, 16 Oct 2020 05:43:31: 43000000 INFO @ Fri, 16 Oct 2020 05:43:33: 51000000 INFO @ Fri, 16 Oct 2020 05:43:38: 47000000 INFO @ Fri, 16 Oct 2020 05:43:38: 44000000 INFO @ Fri, 16 Oct 2020 05:43:41: 52000000 INFO @ Fri, 16 Oct 2020 05:43:45: 48000000 INFO @ Fri, 16 Oct 2020 05:43:45: 45000000 INFO @ Fri, 16 Oct 2020 05:43:48: 53000000 INFO @ Fri, 16 Oct 2020 05:43:53: 46000000 INFO @ Fri, 16 Oct 2020 05:43:53: 49000000 INFO @ Fri, 16 Oct 2020 05:43:55: 54000000 INFO @ Fri, 16 Oct 2020 05:44:00: 47000000 INFO @ Fri, 16 Oct 2020 05:44:01: 50000000 INFO @ Fri, 16 Oct 2020 05:44:03: 55000000 INFO @ Fri, 16 Oct 2020 05:44:08: 48000000 INFO @ Fri, 16 Oct 2020 05:44:08: 51000000 INFO @ Fri, 16 Oct 2020 05:44:10: 56000000 INFO @ Fri, 16 Oct 2020 05:44:15: 49000000 INFO @ Fri, 16 Oct 2020 05:44:16: 52000000 INFO @ Fri, 16 Oct 2020 05:44:18: 57000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 05:44:22: 50000000 INFO @ Fri, 16 Oct 2020 05:44:24: 53000000 INFO @ Fri, 16 Oct 2020 05:44:26: 58000000 INFO @ Fri, 16 Oct 2020 05:44:30: 51000000 INFO @ Fri, 16 Oct 2020 05:44:32: 54000000 INFO @ Fri, 16 Oct 2020 05:44:33: 59000000 INFO @ Fri, 16 Oct 2020 05:44:37: 52000000 INFO @ Fri, 16 Oct 2020 05:44:39: 55000000 INFO @ Fri, 16 Oct 2020 05:44:41: 60000000 INFO @ Fri, 16 Oct 2020 05:44:44: 53000000 INFO @ Fri, 16 Oct 2020 05:44:47: 56000000 INFO @ Fri, 16 Oct 2020 05:44:48: 61000000 INFO @ Fri, 16 Oct 2020 05:44:52: 54000000 INFO @ Fri, 16 Oct 2020 05:44:55: 57000000 INFO @ Fri, 16 Oct 2020 05:44:56: 62000000 INFO @ Fri, 16 Oct 2020 05:44:59: 55000000 INFO @ Fri, 16 Oct 2020 05:45:02: 58000000 INFO @ Fri, 16 Oct 2020 05:45:03: 63000000 INFO @ Fri, 16 Oct 2020 05:45:07: 56000000 INFO @ Fri, 16 Oct 2020 05:45:09: 59000000 INFO @ Fri, 16 Oct 2020 05:45:11: 64000000 INFO @ Fri, 16 Oct 2020 05:45:14: 57000000 INFO @ Fri, 16 Oct 2020 05:45:17: 60000000 INFO @ Fri, 16 Oct 2020 05:45:18: 65000000 INFO @ Fri, 16 Oct 2020 05:45:21: 58000000 INFO @ Fri, 16 Oct 2020 05:45:24: 61000000 INFO @ Fri, 16 Oct 2020 05:45:26: 66000000 INFO @ Fri, 16 Oct 2020 05:45:29: 59000000 INFO @ Fri, 16 Oct 2020 05:45:32: 62000000 INFO @ Fri, 16 Oct 2020 05:45:34: 67000000 INFO @ Fri, 16 Oct 2020 05:45:36: 60000000 INFO @ Fri, 16 Oct 2020 05:45:39: 63000000 INFO @ Fri, 16 Oct 2020 05:45:41: 68000000 INFO @ Fri, 16 Oct 2020 05:45:43: 61000000 INFO @ Fri, 16 Oct 2020 05:45:47: 64000000 INFO @ Fri, 16 Oct 2020 05:45:49: 69000000 INFO @ Fri, 16 Oct 2020 05:45:50: 62000000 INFO @ Fri, 16 Oct 2020 05:45:54: 65000000 INFO @ Fri, 16 Oct 2020 05:45:56: 70000000 INFO @ Fri, 16 Oct 2020 05:45:58: 63000000 INFO @ Fri, 16 Oct 2020 05:46:02: 66000000 INFO @ Fri, 16 Oct 2020 05:46:04: 71000000 INFO @ Fri, 16 Oct 2020 05:46:05: 64000000 INFO @ Fri, 16 Oct 2020 05:46:09: 67000000 INFO @ Fri, 16 Oct 2020 05:46:11: 72000000 INFO @ Fri, 16 Oct 2020 05:46:12: 65000000 INFO @ Fri, 16 Oct 2020 05:46:16: 68000000 INFO @ Fri, 16 Oct 2020 05:46:19: 73000000 INFO @ Fri, 16 Oct 2020 05:46:20: 66000000 INFO @ Fri, 16 Oct 2020 05:46:24: 69000000 INFO @ Fri, 16 Oct 2020 05:46:26: 74000000 INFO @ Fri, 16 Oct 2020 05:46:27: 67000000 INFO @ Fri, 16 Oct 2020 05:46:31: 70000000 INFO @ Fri, 16 Oct 2020 05:46:33: 75000000 INFO @ Fri, 16 Oct 2020 05:46:34: 68000000 INFO @ Fri, 16 Oct 2020 05:46:39: 71000000 INFO @ Fri, 16 Oct 2020 05:46:41: 76000000 INFO @ Fri, 16 Oct 2020 05:46:42: 69000000 INFO @ Fri, 16 Oct 2020 05:46:46: 72000000 INFO @ Fri, 16 Oct 2020 05:46:48: 77000000 INFO @ Fri, 16 Oct 2020 05:46:49: 70000000 INFO @ Fri, 16 Oct 2020 05:46:53: 73000000 INFO @ Fri, 16 Oct 2020 05:46:56: 78000000 INFO @ Fri, 16 Oct 2020 05:46:56: 71000000 INFO @ Fri, 16 Oct 2020 05:47:01: 74000000 INFO @ Fri, 16 Oct 2020 05:47:03: 79000000 INFO @ Fri, 16 Oct 2020 05:47:04: 72000000 INFO @ Fri, 16 Oct 2020 05:47:08: 75000000 INFO @ Fri, 16 Oct 2020 05:47:11: 80000000 INFO @ Fri, 16 Oct 2020 05:47:11: 73000000 INFO @ Fri, 16 Oct 2020 05:47:16: 76000000 INFO @ Fri, 16 Oct 2020 05:47:18: 81000000 INFO @ Fri, 16 Oct 2020 05:47:18: 74000000 INFO @ Fri, 16 Oct 2020 05:47:20: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:47:20: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:47:20: #1 total tags in treatment: 81184325 INFO @ Fri, 16 Oct 2020 05:47:20: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:47:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:47:21: #1 tags after filtering in treatment: 81184282 INFO @ Fri, 16 Oct 2020 05:47:21: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:47:21: #1 finished! INFO @ Fri, 16 Oct 2020 05:47:21: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:47:21: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:47:23: 77000000 INFO @ Fri, 16 Oct 2020 05:47:25: 75000000 INFO @ Fri, 16 Oct 2020 05:47:28: #2 number of paired peaks: 33132 INFO @ Fri, 16 Oct 2020 05:47:28: start model_add_line... INFO @ Fri, 16 Oct 2020 05:47:29: start X-correlation... INFO @ Fri, 16 Oct 2020 05:47:29: end of X-cor INFO @ Fri, 16 Oct 2020 05:47:29: #2 finished! INFO @ Fri, 16 Oct 2020 05:47:29: #2 predicted fragment length is 166 bps INFO @ Fri, 16 Oct 2020 05:47:29: #2 alternative fragment length(s) may be 4,166 bps INFO @ Fri, 16 Oct 2020 05:47:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.05_model.r INFO @ Fri, 16 Oct 2020 05:47:29: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:47:29: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 05:47:30: 78000000 INFO @ Fri, 16 Oct 2020 05:47:33: 76000000 BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 05:47:37: 79000000 INFO @ Fri, 16 Oct 2020 05:47:40: 77000000 INFO @ Fri, 16 Oct 2020 05:47:45: 80000000 INFO @ Fri, 16 Oct 2020 05:47:47: 78000000 INFO @ Fri, 16 Oct 2020 05:47:52: 81000000 INFO @ Fri, 16 Oct 2020 05:47:54: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:47:54: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:47:54: #1 total tags in treatment: 81184325 INFO @ Fri, 16 Oct 2020 05:47:54: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:47:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:47:54: 79000000 INFO @ Fri, 16 Oct 2020 05:47:55: #1 tags after filtering in treatment: 81184282 INFO @ Fri, 16 Oct 2020 05:47:55: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:47:55: #1 finished! INFO @ Fri, 16 Oct 2020 05:47:55: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:47:55: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:48:01: 80000000 INFO @ Fri, 16 Oct 2020 05:48:02: #2 number of paired peaks: 33132 INFO @ Fri, 16 Oct 2020 05:48:02: start model_add_line... INFO @ Fri, 16 Oct 2020 05:48:03: start X-correlation... INFO @ Fri, 16 Oct 2020 05:48:03: end of X-cor INFO @ Fri, 16 Oct 2020 05:48:03: #2 finished! INFO @ Fri, 16 Oct 2020 05:48:03: #2 predicted fragment length is 166 bps INFO @ Fri, 16 Oct 2020 05:48:03: #2 alternative fragment length(s) may be 4,166 bps INFO @ Fri, 16 Oct 2020 05:48:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.10_model.r INFO @ Fri, 16 Oct 2020 05:48:03: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:48:03: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 05:48:08: 81000000 INFO @ Fri, 16 Oct 2020 05:48:09: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:48:09: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:48:09: #1 total tags in treatment: 81184325 INFO @ Fri, 16 Oct 2020 05:48:09: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:48:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:48:10: #1 tags after filtering in treatment: 81184282 INFO @ Fri, 16 Oct 2020 05:48:10: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:48:10: #1 finished! INFO @ Fri, 16 Oct 2020 05:48:10: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:48:10: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:48:18: #2 number of paired peaks: 33132 INFO @ Fri, 16 Oct 2020 05:48:18: start model_add_line... INFO @ Fri, 16 Oct 2020 05:48:18: start X-correlation... INFO @ Fri, 16 Oct 2020 05:48:18: end of X-cor INFO @ Fri, 16 Oct 2020 05:48:18: #2 finished! INFO @ Fri, 16 Oct 2020 05:48:18: #2 predicted fragment length is 166 bps INFO @ Fri, 16 Oct 2020 05:48:18: #2 alternative fragment length(s) may be 4,166 bps INFO @ Fri, 16 Oct 2020 05:48:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.20_model.r INFO @ Fri, 16 Oct 2020 05:48:18: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:48:18: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 05:50:31: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:51:10: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:51:19: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:52:11: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.05_peaks.xls INFO @ Fri, 16 Oct 2020 05:52:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 05:52:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.05_summits.bed INFO @ Fri, 16 Oct 2020 05:52:11: Done! pass1 - making usageList (148 chroms): 7 millis pass2 - checking and writing primary data (44491 records, 4 fields): 41 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 05:52:57: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.10_peaks.xls INFO @ Fri, 16 Oct 2020 05:52:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 05:52:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.10_summits.bed INFO @ Fri, 16 Oct 2020 05:52:57: Done! pass1 - making usageList (91 chroms): 2 millis pass2 - checking and writing primary data (11534 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 05:53:04: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.20_peaks.xls INFO @ Fri, 16 Oct 2020 05:53:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 05:53:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745111/ERX2745111.20_summits.bed INFO @ Fri, 16 Oct 2020 05:53:04: Done! pass1 - making usageList (54 chroms): 1 millis pass2 - checking and writing primary data (1237 records, 4 fields): 5 millis CompletedMACS2peakCalling