Job ID = 10223616 SRX = ERX2745110 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T18:57:07 prefetch.2.10.7: 1) Downloading 'ERR2731885'... 2020-10-15T18:57:07 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T18:59:11 prefetch.2.10.7: HTTPS download succeed 2020-10-15T18:59:11 prefetch.2.10.7: 1) 'ERR2731885' was downloaded successfully Read 96968876 spots for ERR2731885/ERR2731885.sra Written 96968876 spots for ERR2731885/ERR2731885.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:06:41 96968876 reads; of these: 96968876 (100.00%) were unpaired; of these: 2605186 (2.69%) aligned 0 times 71249435 (73.48%) aligned exactly 1 time 23114255 (23.84%) aligned >1 times 97.31% overall alignment rate Time searching: 01:06:45 Overall time: 01:06:45 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 26014914 / 94363690 = 0.2757 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:25:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:25:08: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:25:08: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:25:13: 1000000 INFO @ Fri, 16 Oct 2020 05:25:17: 2000000 INFO @ Fri, 16 Oct 2020 05:25:22: 3000000 INFO @ Fri, 16 Oct 2020 05:25:26: 4000000 INFO @ Fri, 16 Oct 2020 05:25:31: 5000000 INFO @ Fri, 16 Oct 2020 05:25:35: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:25:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:25:38: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:25:38: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:25:40: 7000000 INFO @ Fri, 16 Oct 2020 05:25:43: 1000000 INFO @ Fri, 16 Oct 2020 05:25:44: 8000000 INFO @ Fri, 16 Oct 2020 05:25:48: 2000000 INFO @ Fri, 16 Oct 2020 05:25:49: 9000000 INFO @ Fri, 16 Oct 2020 05:25:53: 3000000 INFO @ Fri, 16 Oct 2020 05:25:54: 10000000 INFO @ Fri, 16 Oct 2020 05:25:58: 11000000 INFO @ Fri, 16 Oct 2020 05:25:59: 4000000 INFO @ Fri, 16 Oct 2020 05:26:03: 12000000 INFO @ Fri, 16 Oct 2020 05:26:04: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:26:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:26:08: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:26:08: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:26:08: 13000000 INFO @ Fri, 16 Oct 2020 05:26:10: 6000000 INFO @ Fri, 16 Oct 2020 05:26:12: 14000000 INFO @ Fri, 16 Oct 2020 05:26:13: 1000000 INFO @ Fri, 16 Oct 2020 05:26:15: 7000000 INFO @ Fri, 16 Oct 2020 05:26:17: 15000000 INFO @ Fri, 16 Oct 2020 05:26:18: 2000000 INFO @ Fri, 16 Oct 2020 05:26:20: 8000000 INFO @ Fri, 16 Oct 2020 05:26:22: 16000000 INFO @ Fri, 16 Oct 2020 05:26:23: 3000000 INFO @ Fri, 16 Oct 2020 05:26:25: 9000000 INFO @ Fri, 16 Oct 2020 05:26:26: 17000000 INFO @ Fri, 16 Oct 2020 05:26:29: 4000000 INFO @ Fri, 16 Oct 2020 05:26:30: 10000000 INFO @ Fri, 16 Oct 2020 05:26:31: 18000000 INFO @ Fri, 16 Oct 2020 05:26:34: 5000000 INFO @ Fri, 16 Oct 2020 05:26:35: 19000000 INFO @ Fri, 16 Oct 2020 05:26:36: 11000000 INFO @ Fri, 16 Oct 2020 05:26:39: 6000000 INFO @ Fri, 16 Oct 2020 05:26:40: 20000000 INFO @ Fri, 16 Oct 2020 05:26:41: 12000000 INFO @ Fri, 16 Oct 2020 05:26:44: 7000000 INFO @ Fri, 16 Oct 2020 05:26:45: 21000000 INFO @ Fri, 16 Oct 2020 05:26:46: 13000000 INFO @ Fri, 16 Oct 2020 05:26:49: 22000000 INFO @ Fri, 16 Oct 2020 05:26:50: 8000000 INFO @ Fri, 16 Oct 2020 05:26:51: 14000000 INFO @ Fri, 16 Oct 2020 05:26:54: 23000000 INFO @ Fri, 16 Oct 2020 05:26:55: 9000000 INFO @ Fri, 16 Oct 2020 05:26:56: 15000000 INFO @ Fri, 16 Oct 2020 05:26:59: 24000000 INFO @ Fri, 16 Oct 2020 05:27:00: 10000000 INFO @ Fri, 16 Oct 2020 05:27:01: 16000000 INFO @ Fri, 16 Oct 2020 05:27:03: 25000000 INFO @ Fri, 16 Oct 2020 05:27:05: 11000000 INFO @ Fri, 16 Oct 2020 05:27:07: 17000000 INFO @ Fri, 16 Oct 2020 05:27:08: 26000000 INFO @ Fri, 16 Oct 2020 05:27:10: 12000000 INFO @ Fri, 16 Oct 2020 05:27:12: 18000000 INFO @ Fri, 16 Oct 2020 05:27:13: 27000000 INFO @ Fri, 16 Oct 2020 05:27:16: 13000000 INFO @ Fri, 16 Oct 2020 05:27:17: 19000000 INFO @ Fri, 16 Oct 2020 05:27:17: 28000000 INFO @ Fri, 16 Oct 2020 05:27:21: 14000000 INFO @ Fri, 16 Oct 2020 05:27:22: 29000000 INFO @ Fri, 16 Oct 2020 05:27:22: 20000000 INFO @ Fri, 16 Oct 2020 05:27:26: 15000000 INFO @ Fri, 16 Oct 2020 05:27:26: 30000000 INFO @ Fri, 16 Oct 2020 05:27:28: 21000000 INFO @ Fri, 16 Oct 2020 05:27:31: 31000000 INFO @ Fri, 16 Oct 2020 05:27:32: 16000000 INFO @ Fri, 16 Oct 2020 05:27:33: 22000000 INFO @ Fri, 16 Oct 2020 05:27:36: 32000000 INFO @ Fri, 16 Oct 2020 05:27:37: 17000000 INFO @ Fri, 16 Oct 2020 05:27:38: 23000000 INFO @ Fri, 16 Oct 2020 05:27:41: 33000000 INFO @ Fri, 16 Oct 2020 05:27:42: 18000000 INFO @ Fri, 16 Oct 2020 05:27:43: 24000000 INFO @ Fri, 16 Oct 2020 05:27:45: 34000000 INFO @ Fri, 16 Oct 2020 05:27:47: 19000000 INFO @ Fri, 16 Oct 2020 05:27:49: 25000000 INFO @ Fri, 16 Oct 2020 05:27:50: 35000000 INFO @ Fri, 16 Oct 2020 05:27:53: 20000000 INFO @ Fri, 16 Oct 2020 05:27:54: 26000000 INFO @ Fri, 16 Oct 2020 05:27:55: 36000000 INFO @ Fri, 16 Oct 2020 05:27:58: 21000000 INFO @ Fri, 16 Oct 2020 05:27:59: 37000000 INFO @ Fri, 16 Oct 2020 05:27:59: 27000000 INFO @ Fri, 16 Oct 2020 05:28:03: 22000000 INFO @ Fri, 16 Oct 2020 05:28:04: 38000000 INFO @ Fri, 16 Oct 2020 05:28:05: 28000000 INFO @ Fri, 16 Oct 2020 05:28:09: 23000000 INFO @ Fri, 16 Oct 2020 05:28:09: 39000000 INFO @ Fri, 16 Oct 2020 05:28:10: 29000000 INFO @ Fri, 16 Oct 2020 05:28:14: 24000000 INFO @ Fri, 16 Oct 2020 05:28:14: 40000000 INFO @ Fri, 16 Oct 2020 05:28:15: 30000000 INFO @ Fri, 16 Oct 2020 05:28:19: 25000000 INFO @ Fri, 16 Oct 2020 05:28:19: 41000000 INFO @ Fri, 16 Oct 2020 05:28:21: 31000000 INFO @ Fri, 16 Oct 2020 05:28:24: 26000000 INFO @ Fri, 16 Oct 2020 05:28:24: 42000000 INFO @ Fri, 16 Oct 2020 05:28:26: 32000000 INFO @ Fri, 16 Oct 2020 05:28:30: 43000000 INFO @ Fri, 16 Oct 2020 05:28:30: 27000000 INFO @ Fri, 16 Oct 2020 05:28:32: 33000000 INFO @ Fri, 16 Oct 2020 05:28:34: 44000000 INFO @ Fri, 16 Oct 2020 05:28:35: 28000000 INFO @ Fri, 16 Oct 2020 05:28:37: 34000000 INFO @ Fri, 16 Oct 2020 05:28:39: 45000000 INFO @ Fri, 16 Oct 2020 05:28:40: 29000000 INFO @ Fri, 16 Oct 2020 05:28:42: 35000000 INFO @ Fri, 16 Oct 2020 05:28:43: 46000000 INFO @ Fri, 16 Oct 2020 05:28:45: 30000000 INFO @ Fri, 16 Oct 2020 05:28:48: 36000000 INFO @ Fri, 16 Oct 2020 05:28:48: 47000000 INFO @ Fri, 16 Oct 2020 05:28:51: 31000000 INFO @ Fri, 16 Oct 2020 05:28:53: 37000000 INFO @ Fri, 16 Oct 2020 05:28:53: 48000000 INFO @ Fri, 16 Oct 2020 05:28:56: 32000000 INFO @ Fri, 16 Oct 2020 05:28:57: 49000000 INFO @ Fri, 16 Oct 2020 05:28:58: 38000000 INFO @ Fri, 16 Oct 2020 05:29:01: 33000000 INFO @ Fri, 16 Oct 2020 05:29:02: 50000000 INFO @ Fri, 16 Oct 2020 05:29:03: 39000000 INFO @ Fri, 16 Oct 2020 05:29:06: 34000000 INFO @ Fri, 16 Oct 2020 05:29:07: 51000000 INFO @ Fri, 16 Oct 2020 05:29:08: 40000000 INFO @ Fri, 16 Oct 2020 05:29:11: 52000000 INFO @ Fri, 16 Oct 2020 05:29:12: 35000000 INFO @ Fri, 16 Oct 2020 05:29:12: 41000000 INFO @ Fri, 16 Oct 2020 05:29:16: 53000000 INFO @ Fri, 16 Oct 2020 05:29:17: 36000000 INFO @ Fri, 16 Oct 2020 05:29:17: 42000000 INFO @ Fri, 16 Oct 2020 05:29:21: 54000000 INFO @ Fri, 16 Oct 2020 05:29:22: 43000000 INFO @ Fri, 16 Oct 2020 05:29:22: 37000000 INFO @ Fri, 16 Oct 2020 05:29:25: 55000000 INFO @ Fri, 16 Oct 2020 05:29:27: 44000000 INFO @ Fri, 16 Oct 2020 05:29:27: 38000000 INFO @ Fri, 16 Oct 2020 05:29:30: 56000000 INFO @ Fri, 16 Oct 2020 05:29:32: 39000000 INFO @ Fri, 16 Oct 2020 05:29:32: 45000000 INFO @ Fri, 16 Oct 2020 05:29:34: 57000000 INFO @ Fri, 16 Oct 2020 05:29:37: 40000000 INFO @ Fri, 16 Oct 2020 05:29:38: 46000000 INFO @ Fri, 16 Oct 2020 05:29:39: 58000000 INFO @ Fri, 16 Oct 2020 05:29:42: 41000000 INFO @ Fri, 16 Oct 2020 05:29:43: 47000000 INFO @ Fri, 16 Oct 2020 05:29:44: 59000000 INFO @ Fri, 16 Oct 2020 05:29:46: 42000000 INFO @ Fri, 16 Oct 2020 05:29:48: 48000000 INFO @ Fri, 16 Oct 2020 05:29:48: 60000000 INFO @ Fri, 16 Oct 2020 05:29:51: 43000000 INFO @ Fri, 16 Oct 2020 05:29:53: 61000000 INFO @ Fri, 16 Oct 2020 05:29:53: 49000000 INFO @ Fri, 16 Oct 2020 05:29:56: 44000000 INFO @ Fri, 16 Oct 2020 05:29:58: 62000000 INFO @ Fri, 16 Oct 2020 05:29:59: 50000000 INFO @ Fri, 16 Oct 2020 05:30:01: 45000000 INFO @ Fri, 16 Oct 2020 05:30:02: 63000000 INFO @ Fri, 16 Oct 2020 05:30:04: 51000000 INFO @ Fri, 16 Oct 2020 05:30:07: 46000000 INFO @ Fri, 16 Oct 2020 05:30:07: 64000000 INFO @ Fri, 16 Oct 2020 05:30:09: 52000000 INFO @ Fri, 16 Oct 2020 05:30:12: 47000000 INFO @ Fri, 16 Oct 2020 05:30:12: 65000000 INFO @ Fri, 16 Oct 2020 05:30:14: 53000000 INFO @ Fri, 16 Oct 2020 05:30:16: 66000000 INFO @ Fri, 16 Oct 2020 05:30:17: 48000000 INFO @ Fri, 16 Oct 2020 05:30:20: 54000000 INFO @ Fri, 16 Oct 2020 05:30:21: 67000000 INFO @ Fri, 16 Oct 2020 05:30:22: 49000000 INFO @ Fri, 16 Oct 2020 05:30:25: 55000000 INFO @ Fri, 16 Oct 2020 05:30:26: 68000000 INFO @ Fri, 16 Oct 2020 05:30:27: 50000000 INFO @ Fri, 16 Oct 2020 05:30:28: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:30:28: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:30:28: #1 total tags in treatment: 68348776 INFO @ Fri, 16 Oct 2020 05:30:28: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:30:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:30:29: #1 tags after filtering in treatment: 68348738 INFO @ Fri, 16 Oct 2020 05:30:29: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:30:29: #1 finished! INFO @ Fri, 16 Oct 2020 05:30:29: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:30:29: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:30:30: 56000000 INFO @ Fri, 16 Oct 2020 05:30:33: 51000000 INFO @ Fri, 16 Oct 2020 05:30:35: #2 number of paired peaks: 16737 INFO @ Fri, 16 Oct 2020 05:30:35: start model_add_line... INFO @ Fri, 16 Oct 2020 05:30:35: 57000000 INFO @ Fri, 16 Oct 2020 05:30:36: start X-correlation... INFO @ Fri, 16 Oct 2020 05:30:36: end of X-cor INFO @ Fri, 16 Oct 2020 05:30:36: #2 finished! INFO @ Fri, 16 Oct 2020 05:30:36: #2 predicted fragment length is 63 bps INFO @ Fri, 16 Oct 2020 05:30:36: #2 alternative fragment length(s) may be 63,121 bps INFO @ Fri, 16 Oct 2020 05:30:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.05_model.r WARNING @ Fri, 16 Oct 2020 05:30:36: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 05:30:36: #2 You may need to consider one of the other alternative d(s): 63,121 WARNING @ Fri, 16 Oct 2020 05:30:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 05:30:36: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:30:36: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 05:30:38: 52000000 INFO @ Fri, 16 Oct 2020 05:30:41: 58000000 INFO @ Fri, 16 Oct 2020 05:30:43: 53000000 INFO @ Fri, 16 Oct 2020 05:30:46: 59000000 INFO @ Fri, 16 Oct 2020 05:30:48: 54000000 INFO @ Fri, 16 Oct 2020 05:30:51: 60000000 INFO @ Fri, 16 Oct 2020 05:30:53: 55000000 INFO @ Fri, 16 Oct 2020 05:30:56: 61000000 INFO @ Fri, 16 Oct 2020 05:30:59: 56000000 INFO @ Fri, 16 Oct 2020 05:31:02: 62000000 INFO @ Fri, 16 Oct 2020 05:31:04: 57000000 INFO @ Fri, 16 Oct 2020 05:31:07: 63000000 INFO @ Fri, 16 Oct 2020 05:31:09: 58000000 INFO @ Fri, 16 Oct 2020 05:31:12: 64000000 INFO @ Fri, 16 Oct 2020 05:31:14: 59000000 INFO @ Fri, 16 Oct 2020 05:31:18: 65000000 INFO @ Fri, 16 Oct 2020 05:31:19: 60000000 INFO @ Fri, 16 Oct 2020 05:31:23: 66000000 INFO @ Fri, 16 Oct 2020 05:31:25: 61000000 INFO @ Fri, 16 Oct 2020 05:31:28: 67000000 INFO @ Fri, 16 Oct 2020 05:31:30: 62000000 INFO @ Fri, 16 Oct 2020 05:31:33: 68000000 INFO @ Fri, 16 Oct 2020 05:31:35: 63000000 INFO @ Fri, 16 Oct 2020 05:31:36: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:31:36: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:31:36: #1 total tags in treatment: 68348776 INFO @ Fri, 16 Oct 2020 05:31:36: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:31:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:31:37: #1 tags after filtering in treatment: 68348738 INFO @ Fri, 16 Oct 2020 05:31:37: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:31:37: #1 finished! INFO @ Fri, 16 Oct 2020 05:31:37: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:31:37: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:31:40: 64000000 INFO @ Fri, 16 Oct 2020 05:31:43: #2 number of paired peaks: 16737 INFO @ Fri, 16 Oct 2020 05:31:43: start model_add_line... INFO @ Fri, 16 Oct 2020 05:31:43: start X-correlation... INFO @ Fri, 16 Oct 2020 05:31:43: end of X-cor INFO @ Fri, 16 Oct 2020 05:31:43: #2 finished! INFO @ Fri, 16 Oct 2020 05:31:43: #2 predicted fragment length is 63 bps INFO @ Fri, 16 Oct 2020 05:31:43: #2 alternative fragment length(s) may be 63,121 bps INFO @ Fri, 16 Oct 2020 05:31:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.10_model.r WARNING @ Fri, 16 Oct 2020 05:31:43: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 05:31:43: #2 You may need to consider one of the other alternative d(s): 63,121 WARNING @ Fri, 16 Oct 2020 05:31:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 05:31:43: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:31:43: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 05:31:45: 65000000 INFO @ Fri, 16 Oct 2020 05:31:50: 66000000 INFO @ Fri, 16 Oct 2020 05:31:56: 67000000 INFO @ Fri, 16 Oct 2020 05:32:01: 68000000 INFO @ Fri, 16 Oct 2020 05:32:03: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:32:03: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:32:03: #1 total tags in treatment: 68348776 INFO @ Fri, 16 Oct 2020 05:32:03: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:32:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:32:04: #1 tags after filtering in treatment: 68348738 INFO @ Fri, 16 Oct 2020 05:32:04: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:32:04: #1 finished! INFO @ Fri, 16 Oct 2020 05:32:04: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:32:04: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:32:10: #2 number of paired peaks: 16737 INFO @ Fri, 16 Oct 2020 05:32:10: start model_add_line... INFO @ Fri, 16 Oct 2020 05:32:10: start X-correlation... INFO @ Fri, 16 Oct 2020 05:32:10: end of X-cor INFO @ Fri, 16 Oct 2020 05:32:10: #2 finished! INFO @ Fri, 16 Oct 2020 05:32:10: #2 predicted fragment length is 63 bps INFO @ Fri, 16 Oct 2020 05:32:10: #2 alternative fragment length(s) may be 63,121 bps INFO @ Fri, 16 Oct 2020 05:32:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.20_model.r WARNING @ Fri, 16 Oct 2020 05:32:10: #2 Since the d (63) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 05:32:10: #2 You may need to consider one of the other alternative d(s): 63,121 WARNING @ Fri, 16 Oct 2020 05:32:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 05:32:10: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:32:10: #3 Pre-compute pvalue-qvalue table... BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 05:33:07: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:34:16: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:34:31: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.05_peaks.xls INFO @ Fri, 16 Oct 2020 05:34:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 05:34:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.05_summits.bed INFO @ Fri, 16 Oct 2020 05:34:31: Done! pass1 - making usageList (78 chroms): 1 millis pass2 - checking and writing primary data (4010 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 05:34:43: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 05:35:38: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.10_peaks.xls INFO @ Fri, 16 Oct 2020 05:35:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 05:35:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.10_summits.bed INFO @ Fri, 16 Oct 2020 05:35:38: Done! pass1 - making usageList (58 chroms): 1 millis pass2 - checking and writing primary data (1643 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 05:36:06: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.20_peaks.xls INFO @ Fri, 16 Oct 2020 05:36:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 05:36:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745110/ERX2745110.20_summits.bed INFO @ Fri, 16 Oct 2020 05:36:06: Done! pass1 - making usageList (42 chroms): 1 millis pass2 - checking and writing primary data (740 records, 4 fields): 3 millis CompletedMACS2peakCalling