Job ID = 10223607 SRX = ERX2745106 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T18:46:37 prefetch.2.10.7: 1) Downloading 'ERR2731881'... 2020-10-15T18:46:38 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T18:48:32 prefetch.2.10.7: HTTPS download succeed 2020-10-15T18:48:32 prefetch.2.10.7: 1) 'ERR2731881' was downloaded successfully Read 93238354 spots for ERR2731881/ERR2731881.sra Written 93238354 spots for ERR2731881/ERR2731881.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:04 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:54:59 93238354 reads; of these: 93238354 (100.00%) were unpaired; of these: 2439257 (2.62%) aligned 0 times 73579983 (78.92%) aligned exactly 1 time 17219114 (18.47%) aligned >1 times 97.38% overall alignment rate Time searching: 00:55:06 Overall time: 00:55:06 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 24166359 / 90799097 = 0.2662 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:02:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:02:26: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:02:26: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:02:33: 1000000 INFO @ Fri, 16 Oct 2020 05:02:40: 2000000 INFO @ Fri, 16 Oct 2020 05:02:46: 3000000 INFO @ Fri, 16 Oct 2020 05:02:53: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:02:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:02:55: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:02:55: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:03:00: 5000000 INFO @ Fri, 16 Oct 2020 05:03:02: 1000000 INFO @ Fri, 16 Oct 2020 05:03:08: 6000000 INFO @ Fri, 16 Oct 2020 05:03:09: 2000000 INFO @ Fri, 16 Oct 2020 05:03:16: 7000000 INFO @ Fri, 16 Oct 2020 05:03:16: 3000000 INFO @ Fri, 16 Oct 2020 05:03:23: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 05:03:24: 8000000 INFO @ Fri, 16 Oct 2020 05:03:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 05:03:25: #1 read tag files... INFO @ Fri, 16 Oct 2020 05:03:25: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 05:03:30: 5000000 INFO @ Fri, 16 Oct 2020 05:03:32: 9000000 INFO @ Fri, 16 Oct 2020 05:03:33: 1000000 INFO @ Fri, 16 Oct 2020 05:03:37: 6000000 INFO @ Fri, 16 Oct 2020 05:03:40: 2000000 INFO @ Fri, 16 Oct 2020 05:03:40: 10000000 INFO @ Fri, 16 Oct 2020 05:03:44: 7000000 INFO @ Fri, 16 Oct 2020 05:03:47: 3000000 INFO @ Fri, 16 Oct 2020 05:03:48: 11000000 INFO @ Fri, 16 Oct 2020 05:03:52: 8000000 INFO @ Fri, 16 Oct 2020 05:03:54: 4000000 INFO @ Fri, 16 Oct 2020 05:03:55: 12000000 INFO @ Fri, 16 Oct 2020 05:03:59: 9000000 INFO @ Fri, 16 Oct 2020 05:04:01: 5000000 INFO @ Fri, 16 Oct 2020 05:04:03: 13000000 INFO @ Fri, 16 Oct 2020 05:04:06: 10000000 INFO @ Fri, 16 Oct 2020 05:04:08: 6000000 INFO @ Fri, 16 Oct 2020 05:04:11: 14000000 INFO @ Fri, 16 Oct 2020 05:04:13: 11000000 INFO @ Fri, 16 Oct 2020 05:04:15: 7000000 INFO @ Fri, 16 Oct 2020 05:04:19: 15000000 INFO @ Fri, 16 Oct 2020 05:04:20: 12000000 INFO @ Fri, 16 Oct 2020 05:04:22: 8000000 INFO @ Fri, 16 Oct 2020 05:04:27: 16000000 INFO @ Fri, 16 Oct 2020 05:04:27: 13000000 INFO @ Fri, 16 Oct 2020 05:04:29: 9000000 INFO @ Fri, 16 Oct 2020 05:04:34: 14000000 INFO @ Fri, 16 Oct 2020 05:04:35: 17000000 INFO @ Fri, 16 Oct 2020 05:04:36: 10000000 INFO @ Fri, 16 Oct 2020 05:04:41: 15000000 INFO @ Fri, 16 Oct 2020 05:04:42: 18000000 INFO @ Fri, 16 Oct 2020 05:04:43: 11000000 INFO @ Fri, 16 Oct 2020 05:04:48: 16000000 INFO @ Fri, 16 Oct 2020 05:04:50: 12000000 INFO @ Fri, 16 Oct 2020 05:04:50: 19000000 INFO @ Fri, 16 Oct 2020 05:04:56: 17000000 INFO @ Fri, 16 Oct 2020 05:04:57: 13000000 INFO @ Fri, 16 Oct 2020 05:04:58: 20000000 INFO @ Fri, 16 Oct 2020 05:05:03: 18000000 INFO @ Fri, 16 Oct 2020 05:05:04: 14000000 INFO @ Fri, 16 Oct 2020 05:05:06: 21000000 INFO @ Fri, 16 Oct 2020 05:05:10: 19000000 INFO @ Fri, 16 Oct 2020 05:05:11: 15000000 INFO @ Fri, 16 Oct 2020 05:05:14: 22000000 INFO @ Fri, 16 Oct 2020 05:05:17: 20000000 INFO @ Fri, 16 Oct 2020 05:05:18: 16000000 INFO @ Fri, 16 Oct 2020 05:05:21: 23000000 INFO @ Fri, 16 Oct 2020 05:05:24: 21000000 INFO @ Fri, 16 Oct 2020 05:05:25: 17000000 INFO @ Fri, 16 Oct 2020 05:05:29: 24000000 INFO @ Fri, 16 Oct 2020 05:05:31: 22000000 INFO @ Fri, 16 Oct 2020 05:05:32: 18000000 INFO @ Fri, 16 Oct 2020 05:05:36: 25000000 INFO @ Fri, 16 Oct 2020 05:05:38: 23000000 INFO @ Fri, 16 Oct 2020 05:05:39: 19000000 INFO @ Fri, 16 Oct 2020 05:05:44: 26000000 INFO @ Fri, 16 Oct 2020 05:05:45: 24000000 INFO @ Fri, 16 Oct 2020 05:05:46: 20000000 INFO @ Fri, 16 Oct 2020 05:05:51: 27000000 INFO @ Fri, 16 Oct 2020 05:05:52: 25000000 INFO @ Fri, 16 Oct 2020 05:05:54: 21000000 INFO @ Fri, 16 Oct 2020 05:05:59: 28000000 INFO @ Fri, 16 Oct 2020 05:06:00: 26000000 INFO @ Fri, 16 Oct 2020 05:06:01: 22000000 INFO @ Fri, 16 Oct 2020 05:06:06: 29000000 INFO @ Fri, 16 Oct 2020 05:06:07: 27000000 INFO @ Fri, 16 Oct 2020 05:06:08: 23000000 INFO @ Fri, 16 Oct 2020 05:06:13: 30000000 INFO @ Fri, 16 Oct 2020 05:06:14: 28000000 INFO @ Fri, 16 Oct 2020 05:06:15: 24000000 INFO @ Fri, 16 Oct 2020 05:06:21: 31000000 INFO @ Fri, 16 Oct 2020 05:06:21: 29000000 INFO @ Fri, 16 Oct 2020 05:06:22: 25000000 INFO @ Fri, 16 Oct 2020 05:06:28: 30000000 INFO @ Fri, 16 Oct 2020 05:06:28: 32000000 INFO @ Fri, 16 Oct 2020 05:06:29: 26000000 INFO @ Fri, 16 Oct 2020 05:06:35: 31000000 INFO @ Fri, 16 Oct 2020 05:06:35: 33000000 INFO @ Fri, 16 Oct 2020 05:06:36: 27000000 INFO @ Fri, 16 Oct 2020 05:06:42: 32000000 INFO @ Fri, 16 Oct 2020 05:06:43: 34000000 INFO @ Fri, 16 Oct 2020 05:06:43: 28000000 INFO @ Fri, 16 Oct 2020 05:06:49: 33000000 INFO @ Fri, 16 Oct 2020 05:06:50: 35000000 INFO @ Fri, 16 Oct 2020 05:06:50: 29000000 INFO @ Fri, 16 Oct 2020 05:06:56: 34000000 INFO @ Fri, 16 Oct 2020 05:06:57: 36000000 INFO @ Fri, 16 Oct 2020 05:06:57: 30000000 INFO @ Fri, 16 Oct 2020 05:07:03: 35000000 INFO @ Fri, 16 Oct 2020 05:07:04: 31000000 INFO @ Fri, 16 Oct 2020 05:07:05: 37000000 INFO @ Fri, 16 Oct 2020 05:07:10: 36000000 INFO @ Fri, 16 Oct 2020 05:07:12: 32000000 INFO @ Fri, 16 Oct 2020 05:07:12: 38000000 INFO @ Fri, 16 Oct 2020 05:07:17: 37000000 INFO @ Fri, 16 Oct 2020 05:07:19: 33000000 INFO @ Fri, 16 Oct 2020 05:07:19: 39000000 INFO @ Fri, 16 Oct 2020 05:07:25: 38000000 INFO @ Fri, 16 Oct 2020 05:07:26: 34000000 INFO @ Fri, 16 Oct 2020 05:07:27: 40000000 INFO @ Fri, 16 Oct 2020 05:07:32: 39000000 INFO @ Fri, 16 Oct 2020 05:07:33: 35000000 INFO @ Fri, 16 Oct 2020 05:07:34: 41000000 INFO @ Fri, 16 Oct 2020 05:07:39: 40000000 INFO @ Fri, 16 Oct 2020 05:07:40: 36000000 INFO @ Fri, 16 Oct 2020 05:07:41: 42000000 INFO @ Fri, 16 Oct 2020 05:07:46: 41000000 INFO @ Fri, 16 Oct 2020 05:07:47: 37000000 INFO @ Fri, 16 Oct 2020 05:07:49: 43000000 INFO @ Fri, 16 Oct 2020 05:07:53: 42000000 INFO @ Fri, 16 Oct 2020 05:07:54: 38000000 INFO @ Fri, 16 Oct 2020 05:07:56: 44000000 INFO @ Fri, 16 Oct 2020 05:08:00: 43000000 INFO @ Fri, 16 Oct 2020 05:08:01: 39000000 INFO @ Fri, 16 Oct 2020 05:08:03: 45000000 INFO @ Fri, 16 Oct 2020 05:08:07: 44000000 INFO @ Fri, 16 Oct 2020 05:08:08: 40000000 INFO @ Fri, 16 Oct 2020 05:08:11: 46000000 INFO @ Fri, 16 Oct 2020 05:08:14: 45000000 INFO @ Fri, 16 Oct 2020 05:08:15: 41000000 INFO @ Fri, 16 Oct 2020 05:08:18: 47000000 INFO @ Fri, 16 Oct 2020 05:08:21: 46000000 INFO @ Fri, 16 Oct 2020 05:08:23: 42000000 INFO @ Fri, 16 Oct 2020 05:08:25: 48000000 INFO @ Fri, 16 Oct 2020 05:08:28: 47000000 INFO @ Fri, 16 Oct 2020 05:08:30: 43000000 INFO @ Fri, 16 Oct 2020 05:08:33: 49000000 INFO @ Fri, 16 Oct 2020 05:08:35: 48000000 INFO @ Fri, 16 Oct 2020 05:08:37: 44000000 INFO @ Fri, 16 Oct 2020 05:08:40: 50000000 INFO @ Fri, 16 Oct 2020 05:08:43: 49000000 INFO @ Fri, 16 Oct 2020 05:08:44: 45000000 INFO @ Fri, 16 Oct 2020 05:08:47: 51000000 INFO @ Fri, 16 Oct 2020 05:08:50: 50000000 INFO @ Fri, 16 Oct 2020 05:08:51: 46000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 05:08:55: 52000000 INFO @ Fri, 16 Oct 2020 05:08:57: 51000000 INFO @ Fri, 16 Oct 2020 05:08:58: 47000000 INFO @ Fri, 16 Oct 2020 05:09:02: 53000000 INFO @ Fri, 16 Oct 2020 05:09:04: 52000000 INFO @ Fri, 16 Oct 2020 05:09:05: 48000000 INFO @ Fri, 16 Oct 2020 05:09:09: 54000000 INFO @ Fri, 16 Oct 2020 05:09:11: 53000000 INFO @ Fri, 16 Oct 2020 05:09:12: 49000000 INFO @ Fri, 16 Oct 2020 05:09:17: 55000000 INFO @ Fri, 16 Oct 2020 05:09:18: 54000000 INFO @ Fri, 16 Oct 2020 05:09:19: 50000000 INFO @ Fri, 16 Oct 2020 05:09:24: 56000000 INFO @ Fri, 16 Oct 2020 05:09:25: 55000000 INFO @ Fri, 16 Oct 2020 05:09:26: 51000000 INFO @ Fri, 16 Oct 2020 05:09:31: 57000000 INFO @ Fri, 16 Oct 2020 05:09:32: 56000000 INFO @ Fri, 16 Oct 2020 05:09:33: 52000000 INFO @ Fri, 16 Oct 2020 05:09:39: 58000000 INFO @ Fri, 16 Oct 2020 05:09:39: 57000000 INFO @ Fri, 16 Oct 2020 05:09:41: 53000000 INFO @ Fri, 16 Oct 2020 05:09:46: 59000000 INFO @ Fri, 16 Oct 2020 05:09:46: 58000000 INFO @ Fri, 16 Oct 2020 05:09:48: 54000000 INFO @ Fri, 16 Oct 2020 05:09:53: 59000000 INFO @ Fri, 16 Oct 2020 05:09:54: 60000000 INFO @ Fri, 16 Oct 2020 05:09:55: 55000000 INFO @ Fri, 16 Oct 2020 05:10:01: 60000000 INFO @ Fri, 16 Oct 2020 05:10:01: 61000000 INFO @ Fri, 16 Oct 2020 05:10:02: 56000000 INFO @ Fri, 16 Oct 2020 05:10:08: 61000000 INFO @ Fri, 16 Oct 2020 05:10:08: 62000000 INFO @ Fri, 16 Oct 2020 05:10:09: 57000000 INFO @ Fri, 16 Oct 2020 05:10:15: 62000000 INFO @ Fri, 16 Oct 2020 05:10:16: 63000000 INFO @ Fri, 16 Oct 2020 05:10:16: 58000000 INFO @ Fri, 16 Oct 2020 05:10:22: 63000000 INFO @ Fri, 16 Oct 2020 05:10:23: 59000000 INFO @ Fri, 16 Oct 2020 05:10:23: 64000000 INFO @ Fri, 16 Oct 2020 05:10:29: 64000000 INFO @ Fri, 16 Oct 2020 05:10:30: 60000000 INFO @ Fri, 16 Oct 2020 05:10:31: 65000000 INFO @ Fri, 16 Oct 2020 05:10:36: 65000000 INFO @ Fri, 16 Oct 2020 05:10:37: 61000000 INFO @ Fri, 16 Oct 2020 05:10:38: 66000000 INFO @ Fri, 16 Oct 2020 05:10:43: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:10:43: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:10:43: #1 total tags in treatment: 66632738 INFO @ Fri, 16 Oct 2020 05:10:43: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:10:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:10:43: 66000000 INFO @ Fri, 16 Oct 2020 05:10:44: #1 tags after filtering in treatment: 66632630 INFO @ Fri, 16 Oct 2020 05:10:44: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:10:44: #1 finished! INFO @ Fri, 16 Oct 2020 05:10:44: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:10:44: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:10:44: 62000000 INFO @ Fri, 16 Oct 2020 05:10:48: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:10:48: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:10:48: #1 total tags in treatment: 66632738 INFO @ Fri, 16 Oct 2020 05:10:48: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:10:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 05:10:49: #1 tags after filtering in treatment: 66632630 INFO @ Fri, 16 Oct 2020 05:10:49: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:10:49: #1 finished! INFO @ Fri, 16 Oct 2020 05:10:49: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:10:49: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:10:51: 63000000 INFO @ Fri, 16 Oct 2020 05:10:54: #2 number of paired peaks: 110814 INFO @ Fri, 16 Oct 2020 05:10:54: start model_add_line... INFO @ Fri, 16 Oct 2020 05:10:55: start X-correlation... INFO @ Fri, 16 Oct 2020 05:10:55: end of X-cor INFO @ Fri, 16 Oct 2020 05:10:55: #2 finished! INFO @ Fri, 16 Oct 2020 05:10:55: #2 predicted fragment length is 210 bps INFO @ Fri, 16 Oct 2020 05:10:55: #2 alternative fragment length(s) may be 210 bps INFO @ Fri, 16 Oct 2020 05:10:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.05_model.r INFO @ Fri, 16 Oct 2020 05:10:55: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:10:55: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 05:10:57: 64000000 INFO @ Fri, 16 Oct 2020 05:10:59: #2 number of paired peaks: 110814 INFO @ Fri, 16 Oct 2020 05:10:59: start model_add_line... INFO @ Fri, 16 Oct 2020 05:11:00: start X-correlation... INFO @ Fri, 16 Oct 2020 05:11:00: end of X-cor INFO @ Fri, 16 Oct 2020 05:11:00: #2 finished! INFO @ Fri, 16 Oct 2020 05:11:00: #2 predicted fragment length is 210 bps INFO @ Fri, 16 Oct 2020 05:11:00: #2 alternative fragment length(s) may be 210 bps INFO @ Fri, 16 Oct 2020 05:11:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.10_model.r INFO @ Fri, 16 Oct 2020 05:11:00: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:11:00: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 05:11:04: 65000000 INFO @ Fri, 16 Oct 2020 05:11:10: 66000000 INFO @ Fri, 16 Oct 2020 05:11:14: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 05:11:14: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 05:11:14: #1 total tags in treatment: 66632738 INFO @ Fri, 16 Oct 2020 05:11:14: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 05:11:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 05:11:15: #1 tags after filtering in treatment: 66632630 INFO @ Fri, 16 Oct 2020 05:11:15: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 05:11:15: #1 finished! INFO @ Fri, 16 Oct 2020 05:11:15: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 05:11:15: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 05:11:25: #2 number of paired peaks: 110814 INFO @ Fri, 16 Oct 2020 05:11:25: start model_add_line... INFO @ Fri, 16 Oct 2020 05:11:26: start X-correlation... INFO @ Fri, 16 Oct 2020 05:11:26: end of X-cor INFO @ Fri, 16 Oct 2020 05:11:26: #2 finished! INFO @ Fri, 16 Oct 2020 05:11:26: #2 predicted fragment length is 210 bps INFO @ Fri, 16 Oct 2020 05:11:26: #2 alternative fragment length(s) may be 210 bps INFO @ Fri, 16 Oct 2020 05:11:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.20_model.r INFO @ Fri, 16 Oct 2020 05:11:26: #3 Call peaks... INFO @ Fri, 16 Oct 2020 05:11:26: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 05:13:33: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:13:46: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:14:01: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 05:15:09: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.05_peaks.xls INFO @ Fri, 16 Oct 2020 05:15:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 05:15:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.05_summits.bed INFO @ Fri, 16 Oct 2020 05:15:10: Done! pass1 - making usageList (224 chroms): 10 millis pass2 - checking and writing primary data (67903 records, 4 fields): 66 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 05:15:30: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.10_peaks.xls INFO @ Fri, 16 Oct 2020 05:15:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 05:15:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.10_summits.bed INFO @ Fri, 16 Oct 2020 05:15:31: Done! pass1 - making usageList (182 chroms): 6 millis pass2 - checking and writing primary data (42706 records, 4 fields): 42 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 05:15:36: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.20_peaks.xls INFO @ Fri, 16 Oct 2020 05:15:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 05:15:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745106/ERX2745106.20_summits.bed INFO @ Fri, 16 Oct 2020 05:15:36: Done! pass1 - making usageList (133 chroms): 5 millis pass2 - checking and writing primary data (24839 records, 4 fields): 26 millis CompletedMACS2peakCalling