Job ID = 10223553 SRX = ERX2745099 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T17:50:57 prefetch.2.10.7: 1) Downloading 'ERR2731874'... 2020-10-15T17:50:57 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T17:53:34 prefetch.2.10.7: HTTPS download succeed 2020-10-15T17:53:34 prefetch.2.10.7: 1) 'ERR2731874' was downloaded successfully Read 108770003 spots for ERR2731874/ERR2731874.sra Written 108770003 spots for ERR2731874/ERR2731874.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:02 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:06:27 108770003 reads; of these: 108770003 (100.00%) were unpaired; of these: 3513266 (3.23%) aligned 0 times 84570734 (77.75%) aligned exactly 1 time 20686003 (19.02%) aligned >1 times 96.77% overall alignment rate Time searching: 01:06:33 Overall time: 01:06:33 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 44 files... [bam_rmdupse_core] 34975150 / 105256737 = 0.3323 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 04:21:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 04:21:09: #1 read tag files... INFO @ Fri, 16 Oct 2020 04:21:09: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 04:21:13: 1000000 INFO @ Fri, 16 Oct 2020 04:21:18: 2000000 INFO @ Fri, 16 Oct 2020 04:21:23: 3000000 INFO @ Fri, 16 Oct 2020 04:21:27: 4000000 INFO @ Fri, 16 Oct 2020 04:21:32: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 04:21:36: 6000000 INFO @ Fri, 16 Oct 2020 04:21:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 04:21:37: #1 read tag files... INFO @ Fri, 16 Oct 2020 04:21:37: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 04:21:41: 7000000 INFO @ Fri, 16 Oct 2020 04:21:42: 1000000 INFO @ Fri, 16 Oct 2020 04:21:45: 8000000 INFO @ Fri, 16 Oct 2020 04:21:47: 2000000 INFO @ Fri, 16 Oct 2020 04:21:50: 9000000 INFO @ Fri, 16 Oct 2020 04:21:52: 3000000 INFO @ Fri, 16 Oct 2020 04:21:54: 10000000 INFO @ Fri, 16 Oct 2020 04:21:57: 4000000 INFO @ Fri, 16 Oct 2020 04:21:59: 11000000 INFO @ Fri, 16 Oct 2020 04:22:01: 5000000 INFO @ Fri, 16 Oct 2020 04:22:03: 12000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 04:22:06: 6000000 INFO @ Fri, 16 Oct 2020 04:22:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 04:22:07: #1 read tag files... INFO @ Fri, 16 Oct 2020 04:22:07: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 04:22:08: 13000000 INFO @ Fri, 16 Oct 2020 04:22:10: 7000000 INFO @ Fri, 16 Oct 2020 04:22:12: 1000000 INFO @ Fri, 16 Oct 2020 04:22:12: 14000000 INFO @ Fri, 16 Oct 2020 04:22:15: 8000000 INFO @ Fri, 16 Oct 2020 04:22:17: 15000000 INFO @ Fri, 16 Oct 2020 04:22:17: 2000000 INFO @ Fri, 16 Oct 2020 04:22:20: 9000000 INFO @ Fri, 16 Oct 2020 04:22:21: 16000000 INFO @ Fri, 16 Oct 2020 04:22:22: 3000000 INFO @ Fri, 16 Oct 2020 04:22:24: 10000000 INFO @ Fri, 16 Oct 2020 04:22:26: 17000000 INFO @ Fri, 16 Oct 2020 04:22:27: 4000000 INFO @ Fri, 16 Oct 2020 04:22:29: 11000000 INFO @ Fri, 16 Oct 2020 04:22:30: 18000000 INFO @ Fri, 16 Oct 2020 04:22:32: 5000000 INFO @ Fri, 16 Oct 2020 04:22:33: 12000000 INFO @ Fri, 16 Oct 2020 04:22:35: 19000000 INFO @ Fri, 16 Oct 2020 04:22:37: 6000000 INFO @ Fri, 16 Oct 2020 04:22:38: 13000000 INFO @ Fri, 16 Oct 2020 04:22:39: 20000000 INFO @ Fri, 16 Oct 2020 04:22:43: 7000000 INFO @ Fri, 16 Oct 2020 04:22:43: 14000000 INFO @ Fri, 16 Oct 2020 04:22:44: 21000000 INFO @ Fri, 16 Oct 2020 04:22:47: 15000000 INFO @ Fri, 16 Oct 2020 04:22:48: 8000000 INFO @ Fri, 16 Oct 2020 04:22:49: 22000000 INFO @ Fri, 16 Oct 2020 04:22:52: 16000000 INFO @ Fri, 16 Oct 2020 04:22:53: 9000000 INFO @ Fri, 16 Oct 2020 04:22:53: 23000000 INFO @ Fri, 16 Oct 2020 04:22:56: 17000000 INFO @ Fri, 16 Oct 2020 04:22:58: 24000000 INFO @ Fri, 16 Oct 2020 04:22:58: 10000000 INFO @ Fri, 16 Oct 2020 04:23:01: 18000000 INFO @ Fri, 16 Oct 2020 04:23:02: 25000000 INFO @ Fri, 16 Oct 2020 04:23:03: 11000000 INFO @ Fri, 16 Oct 2020 04:23:05: 19000000 INFO @ Fri, 16 Oct 2020 04:23:07: 26000000 INFO @ Fri, 16 Oct 2020 04:23:08: 12000000 INFO @ Fri, 16 Oct 2020 04:23:10: 20000000 INFO @ Fri, 16 Oct 2020 04:23:11: 27000000 INFO @ Fri, 16 Oct 2020 04:23:13: 13000000 INFO @ Fri, 16 Oct 2020 04:23:15: 21000000 INFO @ Fri, 16 Oct 2020 04:23:16: 28000000 INFO @ Fri, 16 Oct 2020 04:23:19: 14000000 INFO @ Fri, 16 Oct 2020 04:23:19: 22000000 INFO @ Fri, 16 Oct 2020 04:23:21: 29000000 INFO @ Fri, 16 Oct 2020 04:23:24: 15000000 INFO @ Fri, 16 Oct 2020 04:23:24: 23000000 INFO @ Fri, 16 Oct 2020 04:23:25: 30000000 INFO @ Fri, 16 Oct 2020 04:23:28: 24000000 INFO @ Fri, 16 Oct 2020 04:23:29: 16000000 INFO @ Fri, 16 Oct 2020 04:23:30: 31000000 INFO @ Fri, 16 Oct 2020 04:23:33: 25000000 INFO @ Fri, 16 Oct 2020 04:23:34: 32000000 INFO @ Fri, 16 Oct 2020 04:23:34: 17000000 INFO @ Fri, 16 Oct 2020 04:23:37: 26000000 INFO @ Fri, 16 Oct 2020 04:23:39: 33000000 INFO @ Fri, 16 Oct 2020 04:23:40: 18000000 INFO @ Fri, 16 Oct 2020 04:23:42: 27000000 INFO @ Fri, 16 Oct 2020 04:23:43: 34000000 INFO @ Fri, 16 Oct 2020 04:23:45: 19000000 INFO @ Fri, 16 Oct 2020 04:23:46: 28000000 INFO @ Fri, 16 Oct 2020 04:23:48: 35000000 INFO @ Fri, 16 Oct 2020 04:23:50: 20000000 INFO @ Fri, 16 Oct 2020 04:23:51: 29000000 INFO @ Fri, 16 Oct 2020 04:23:52: 36000000 INFO @ Fri, 16 Oct 2020 04:23:55: 30000000 INFO @ Fri, 16 Oct 2020 04:23:56: 21000000 INFO @ Fri, 16 Oct 2020 04:23:57: 37000000 INFO @ Fri, 16 Oct 2020 04:24:00: 31000000 INFO @ Fri, 16 Oct 2020 04:24:01: 22000000 INFO @ Fri, 16 Oct 2020 04:24:01: 38000000 INFO @ Fri, 16 Oct 2020 04:24:05: 32000000 INFO @ Fri, 16 Oct 2020 04:24:06: 23000000 INFO @ Fri, 16 Oct 2020 04:24:06: 39000000 INFO @ Fri, 16 Oct 2020 04:24:09: 33000000 INFO @ Fri, 16 Oct 2020 04:24:11: 24000000 INFO @ Fri, 16 Oct 2020 04:24:12: 40000000 INFO @ Fri, 16 Oct 2020 04:24:14: 34000000 INFO @ Fri, 16 Oct 2020 04:24:16: 41000000 INFO @ Fri, 16 Oct 2020 04:24:17: 25000000 INFO @ Fri, 16 Oct 2020 04:24:18: 35000000 INFO @ Fri, 16 Oct 2020 04:24:21: 42000000 INFO @ Fri, 16 Oct 2020 04:24:22: 26000000 INFO @ Fri, 16 Oct 2020 04:24:23: 36000000 INFO @ Fri, 16 Oct 2020 04:24:26: 43000000 INFO @ Fri, 16 Oct 2020 04:24:27: 27000000 INFO @ Fri, 16 Oct 2020 04:24:27: 37000000 INFO @ Fri, 16 Oct 2020 04:24:30: 44000000 INFO @ Fri, 16 Oct 2020 04:24:32: 38000000 INFO @ Fri, 16 Oct 2020 04:24:32: 28000000 INFO @ Fri, 16 Oct 2020 04:24:35: 45000000 INFO @ Fri, 16 Oct 2020 04:24:37: 39000000 INFO @ Fri, 16 Oct 2020 04:24:37: 29000000 INFO @ Fri, 16 Oct 2020 04:24:39: 46000000 INFO @ Fri, 16 Oct 2020 04:24:42: 40000000 INFO @ Fri, 16 Oct 2020 04:24:43: 30000000 INFO @ Fri, 16 Oct 2020 04:24:44: 47000000 INFO @ Fri, 16 Oct 2020 04:24:47: 41000000 INFO @ Fri, 16 Oct 2020 04:24:48: 31000000 INFO @ Fri, 16 Oct 2020 04:24:49: 48000000 INFO @ Fri, 16 Oct 2020 04:24:52: 42000000 INFO @ Fri, 16 Oct 2020 04:24:53: 32000000 INFO @ Fri, 16 Oct 2020 04:24:53: 49000000 INFO @ Fri, 16 Oct 2020 04:24:56: 43000000 INFO @ Fri, 16 Oct 2020 04:24:58: 50000000 INFO @ Fri, 16 Oct 2020 04:24:58: 33000000 INFO @ Fri, 16 Oct 2020 04:25:01: 44000000 INFO @ Fri, 16 Oct 2020 04:25:03: 51000000 INFO @ Fri, 16 Oct 2020 04:25:04: 34000000 INFO @ Fri, 16 Oct 2020 04:25:06: 45000000 INFO @ Fri, 16 Oct 2020 04:25:07: 52000000 INFO @ Fri, 16 Oct 2020 04:25:09: 35000000 INFO @ Fri, 16 Oct 2020 04:25:10: 46000000 INFO @ Fri, 16 Oct 2020 04:25:12: 53000000 INFO @ Fri, 16 Oct 2020 04:25:14: 36000000 INFO @ Fri, 16 Oct 2020 04:25:15: 47000000 INFO @ Fri, 16 Oct 2020 04:25:16: 54000000 INFO @ Fri, 16 Oct 2020 04:25:19: 37000000 INFO @ Fri, 16 Oct 2020 04:25:19: 48000000 INFO @ Fri, 16 Oct 2020 04:25:21: 55000000 INFO @ Fri, 16 Oct 2020 04:25:24: 49000000 INFO @ Fri, 16 Oct 2020 04:25:25: 38000000 INFO @ Fri, 16 Oct 2020 04:25:26: 56000000 INFO @ Fri, 16 Oct 2020 04:25:29: 50000000 INFO @ Fri, 16 Oct 2020 04:25:29: 39000000 INFO @ Fri, 16 Oct 2020 04:25:30: 57000000 INFO @ Fri, 16 Oct 2020 04:25:33: 51000000 INFO @ Fri, 16 Oct 2020 04:25:34: 40000000 INFO @ Fri, 16 Oct 2020 04:25:35: 58000000 INFO @ Fri, 16 Oct 2020 04:25:38: 52000000 INFO @ Fri, 16 Oct 2020 04:25:39: 41000000 INFO @ Fri, 16 Oct 2020 04:25:40: 59000000 INFO @ Fri, 16 Oct 2020 04:25:43: 53000000 INFO @ Fri, 16 Oct 2020 04:25:44: 60000000 INFO @ Fri, 16 Oct 2020 04:25:44: 42000000 INFO @ Fri, 16 Oct 2020 04:25:47: 54000000 INFO @ Fri, 16 Oct 2020 04:25:49: 61000000 INFO @ Fri, 16 Oct 2020 04:25:49: 43000000 INFO @ Fri, 16 Oct 2020 04:25:52: 55000000 INFO @ Fri, 16 Oct 2020 04:25:53: 62000000 INFO @ Fri, 16 Oct 2020 04:25:55: 44000000 INFO @ Fri, 16 Oct 2020 04:25:57: 56000000 INFO @ Fri, 16 Oct 2020 04:25:58: 63000000 INFO @ Fri, 16 Oct 2020 04:26:00: 45000000 INFO @ Fri, 16 Oct 2020 04:26:01: 57000000 INFO @ Fri, 16 Oct 2020 04:26:03: 64000000 INFO @ Fri, 16 Oct 2020 04:26:05: 46000000 INFO @ Fri, 16 Oct 2020 04:26:06: 58000000 INFO @ Fri, 16 Oct 2020 04:26:07: 65000000 INFO @ Fri, 16 Oct 2020 04:26:10: 59000000 INFO @ Fri, 16 Oct 2020 04:26:11: 47000000 INFO @ Fri, 16 Oct 2020 04:26:12: 66000000 INFO @ Fri, 16 Oct 2020 04:26:15: 60000000 INFO @ Fri, 16 Oct 2020 04:26:16: 48000000 INFO @ Fri, 16 Oct 2020 04:26:16: 67000000 INFO @ Fri, 16 Oct 2020 04:26:20: 61000000 INFO @ Fri, 16 Oct 2020 04:26:21: 68000000 INFO @ Fri, 16 Oct 2020 04:26:21: 49000000 INFO @ Fri, 16 Oct 2020 04:26:24: 62000000 INFO @ Fri, 16 Oct 2020 04:26:26: 69000000 INFO @ Fri, 16 Oct 2020 04:26:26: 50000000 INFO @ Fri, 16 Oct 2020 04:26:29: 63000000 INFO @ Fri, 16 Oct 2020 04:26:30: 70000000 INFO @ Fri, 16 Oct 2020 04:26:32: 51000000 INFO @ Fri, 16 Oct 2020 04:26:32: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 04:26:32: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 04:26:32: #1 total tags in treatment: 70281587 INFO @ Fri, 16 Oct 2020 04:26:32: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 04:26:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 04:26:33: #1 tags after filtering in treatment: 70281516 INFO @ Fri, 16 Oct 2020 04:26:33: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 04:26:33: #1 finished! INFO @ Fri, 16 Oct 2020 04:26:33: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 04:26:33: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 04:26:33: 64000000 INFO @ Fri, 16 Oct 2020 04:26:37: 52000000 INFO @ Fri, 16 Oct 2020 04:26:38: 65000000 INFO @ Fri, 16 Oct 2020 04:26:42: 53000000 INFO @ Fri, 16 Oct 2020 04:26:42: 66000000 INFO @ Fri, 16 Oct 2020 04:26:43: #2 number of paired peaks: 99780 INFO @ Fri, 16 Oct 2020 04:26:43: start model_add_line... INFO @ Fri, 16 Oct 2020 04:26:44: start X-correlation... INFO @ Fri, 16 Oct 2020 04:26:44: end of X-cor INFO @ Fri, 16 Oct 2020 04:26:44: #2 finished! INFO @ Fri, 16 Oct 2020 04:26:44: #2 predicted fragment length is 207 bps INFO @ Fri, 16 Oct 2020 04:26:44: #2 alternative fragment length(s) may be 207 bps INFO @ Fri, 16 Oct 2020 04:26:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.05_model.r INFO @ Fri, 16 Oct 2020 04:26:44: #3 Call peaks... INFO @ Fri, 16 Oct 2020 04:26:44: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 04:26:47: 67000000 INFO @ Fri, 16 Oct 2020 04:26:47: 54000000 INFO @ Fri, 16 Oct 2020 04:26:51: 68000000 INFO @ Fri, 16 Oct 2020 04:26:52: 55000000 INFO @ Fri, 16 Oct 2020 04:26:56: 69000000 INFO @ Fri, 16 Oct 2020 04:26:57: 56000000 INFO @ Fri, 16 Oct 2020 04:27:01: 70000000 INFO @ Fri, 16 Oct 2020 04:27:02: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 04:27:02: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 04:27:02: #1 total tags in treatment: 70281587 INFO @ Fri, 16 Oct 2020 04:27:02: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 04:27:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 04:27:02: 57000000 INFO @ Fri, 16 Oct 2020 04:27:04: #1 tags after filtering in treatment: 70281516 INFO @ Fri, 16 Oct 2020 04:27:04: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 04:27:04: #1 finished! INFO @ Fri, 16 Oct 2020 04:27:04: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 04:27:04: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 04:27:08: 58000000 INFO @ Fri, 16 Oct 2020 04:27:13: 59000000 INFO @ Fri, 16 Oct 2020 04:27:13: #2 number of paired peaks: 99780 INFO @ Fri, 16 Oct 2020 04:27:13: start model_add_line... INFO @ Fri, 16 Oct 2020 04:27:14: start X-correlation... INFO @ Fri, 16 Oct 2020 04:27:14: end of X-cor INFO @ Fri, 16 Oct 2020 04:27:14: #2 finished! INFO @ Fri, 16 Oct 2020 04:27:14: #2 predicted fragment length is 207 bps INFO @ Fri, 16 Oct 2020 04:27:14: #2 alternative fragment length(s) may be 207 bps INFO @ Fri, 16 Oct 2020 04:27:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.10_model.r INFO @ Fri, 16 Oct 2020 04:27:14: #3 Call peaks... INFO @ Fri, 16 Oct 2020 04:27:14: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 04:27:18: 60000000 INFO @ Fri, 16 Oct 2020 04:27:23: 61000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 04:27:28: 62000000 INFO @ Fri, 16 Oct 2020 04:27:33: 63000000 INFO @ Fri, 16 Oct 2020 04:27:38: 64000000 INFO @ Fri, 16 Oct 2020 04:27:43: 65000000 INFO @ Fri, 16 Oct 2020 04:27:48: 66000000 INFO @ Fri, 16 Oct 2020 04:27:53: 67000000 INFO @ Fri, 16 Oct 2020 04:27:58: 68000000 INFO @ Fri, 16 Oct 2020 04:28:03: 69000000 INFO @ Fri, 16 Oct 2020 04:28:08: 70000000 INFO @ Fri, 16 Oct 2020 04:28:10: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 04:28:10: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 04:28:10: #1 total tags in treatment: 70281587 INFO @ Fri, 16 Oct 2020 04:28:10: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 04:28:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 04:28:12: #1 tags after filtering in treatment: 70281516 INFO @ Fri, 16 Oct 2020 04:28:12: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 04:28:12: #1 finished! INFO @ Fri, 16 Oct 2020 04:28:12: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 04:28:12: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 04:28:21: #2 number of paired peaks: 99780 INFO @ Fri, 16 Oct 2020 04:28:21: start model_add_line... INFO @ Fri, 16 Oct 2020 04:28:22: start X-correlation... INFO @ Fri, 16 Oct 2020 04:28:22: end of X-cor INFO @ Fri, 16 Oct 2020 04:28:22: #2 finished! INFO @ Fri, 16 Oct 2020 04:28:22: #2 predicted fragment length is 207 bps INFO @ Fri, 16 Oct 2020 04:28:22: #2 alternative fragment length(s) may be 207 bps INFO @ Fri, 16 Oct 2020 04:28:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.20_model.r INFO @ Fri, 16 Oct 2020 04:28:22: #3 Call peaks... INFO @ Fri, 16 Oct 2020 04:28:22: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 04:29:38: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 04:29:58: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 04:31:17: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 04:31:28: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.05_peaks.xls INFO @ Fri, 16 Oct 2020 04:31:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 04:31:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.05_summits.bed INFO @ Fri, 16 Oct 2020 04:31:29: Done! pass1 - making usageList (217 chroms): 9 millis pass2 - checking and writing primary data (64132 records, 4 fields): 66 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 04:31:51: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.10_peaks.xls INFO @ Fri, 16 Oct 2020 04:31:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 04:31:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.10_summits.bed INFO @ Fri, 16 Oct 2020 04:31:51: Done! pass1 - making usageList (176 chroms): 6 millis pass2 - checking and writing primary data (40129 records, 4 fields): 42 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 04:33:07: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.20_peaks.xls INFO @ Fri, 16 Oct 2020 04:33:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 04:33:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745099/ERX2745099.20_summits.bed INFO @ Fri, 16 Oct 2020 04:33:07: Done! pass1 - making usageList (139 chroms): 3 millis pass2 - checking and writing primary data (23334 records, 4 fields): 30 millis CompletedMACS2peakCalling