Job ID = 10223545 SRX = ERX2745096 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T17:42:57 prefetch.2.10.7: 1) Downloading 'ERR2731871'... 2020-10-15T17:42:57 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T17:45:47 prefetch.2.10.7: HTTPS download succeed 2020-10-15T17:45:47 prefetch.2.10.7: 1) 'ERR2731871' was downloaded successfully Read 100171587 spots for ERR2731871/ERR2731871.sra Written 100171587 spots for ERR2731871/ERR2731871.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:04:49 100171587 reads; of these: 100171587 (100.00%) were unpaired; of these: 2815482 (2.81%) aligned 0 times 76510246 (76.38%) aligned exactly 1 time 20845859 (20.81%) aligned >1 times 97.19% overall alignment rate Time searching: 01:04:53 Overall time: 01:04:53 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 29992944 / 97356105 = 0.3081 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 04:09:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 04:09:42: #1 read tag files... INFO @ Fri, 16 Oct 2020 04:09:42: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 04:09:47: 1000000 INFO @ Fri, 16 Oct 2020 04:09:51: 2000000 INFO @ Fri, 16 Oct 2020 04:09:56: 3000000 INFO @ Fri, 16 Oct 2020 04:10:00: 4000000 INFO @ Fri, 16 Oct 2020 04:10:05: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 04:10:10: 6000000 INFO @ Fri, 16 Oct 2020 04:10:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 04:10:11: #1 read tag files... INFO @ Fri, 16 Oct 2020 04:10:11: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 04:10:15: 7000000 INFO @ Fri, 16 Oct 2020 04:10:17: 1000000 INFO @ Fri, 16 Oct 2020 04:10:20: 8000000 INFO @ Fri, 16 Oct 2020 04:10:22: 2000000 INFO @ Fri, 16 Oct 2020 04:10:25: 9000000 INFO @ Fri, 16 Oct 2020 04:10:27: 3000000 INFO @ Fri, 16 Oct 2020 04:10:30: 10000000 INFO @ Fri, 16 Oct 2020 04:10:32: 4000000 INFO @ Fri, 16 Oct 2020 04:10:35: 11000000 INFO @ Fri, 16 Oct 2020 04:10:37: 5000000 INFO @ Fri, 16 Oct 2020 04:10:40: 12000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 04:10:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 04:10:41: #1 read tag files... INFO @ Fri, 16 Oct 2020 04:10:41: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 04:10:42: 6000000 INFO @ Fri, 16 Oct 2020 04:10:45: 13000000 INFO @ Fri, 16 Oct 2020 04:10:47: 7000000 INFO @ Fri, 16 Oct 2020 04:10:47: 1000000 INFO @ Fri, 16 Oct 2020 04:10:50: 14000000 INFO @ Fri, 16 Oct 2020 04:10:52: 8000000 INFO @ Fri, 16 Oct 2020 04:10:53: 2000000 INFO @ Fri, 16 Oct 2020 04:10:55: 15000000 INFO @ Fri, 16 Oct 2020 04:10:57: 9000000 INFO @ Fri, 16 Oct 2020 04:10:59: 3000000 INFO @ Fri, 16 Oct 2020 04:11:00: 16000000 INFO @ Fri, 16 Oct 2020 04:11:02: 10000000 INFO @ Fri, 16 Oct 2020 04:11:04: 4000000 INFO @ Fri, 16 Oct 2020 04:11:05: 17000000 INFO @ Fri, 16 Oct 2020 04:11:07: 11000000 INFO @ Fri, 16 Oct 2020 04:11:10: 18000000 INFO @ Fri, 16 Oct 2020 04:11:10: 5000000 INFO @ Fri, 16 Oct 2020 04:11:12: 12000000 INFO @ Fri, 16 Oct 2020 04:11:15: 19000000 INFO @ Fri, 16 Oct 2020 04:11:16: 6000000 INFO @ Fri, 16 Oct 2020 04:11:17: 13000000 INFO @ Fri, 16 Oct 2020 04:11:20: 20000000 INFO @ Fri, 16 Oct 2020 04:11:21: 7000000 INFO @ Fri, 16 Oct 2020 04:11:22: 14000000 INFO @ Fri, 16 Oct 2020 04:11:25: 21000000 INFO @ Fri, 16 Oct 2020 04:11:27: 8000000 INFO @ Fri, 16 Oct 2020 04:11:27: 15000000 INFO @ Fri, 16 Oct 2020 04:11:30: 22000000 INFO @ Fri, 16 Oct 2020 04:11:32: 16000000 INFO @ Fri, 16 Oct 2020 04:11:33: 9000000 INFO @ Fri, 16 Oct 2020 04:11:35: 23000000 INFO @ Fri, 16 Oct 2020 04:11:37: 17000000 INFO @ Fri, 16 Oct 2020 04:11:39: 10000000 INFO @ Fri, 16 Oct 2020 04:11:40: 24000000 INFO @ Fri, 16 Oct 2020 04:11:42: 18000000 INFO @ Fri, 16 Oct 2020 04:11:44: 11000000 INFO @ Fri, 16 Oct 2020 04:11:46: 25000000 INFO @ Fri, 16 Oct 2020 04:11:47: 19000000 INFO @ Fri, 16 Oct 2020 04:11:50: 12000000 INFO @ Fri, 16 Oct 2020 04:11:51: 26000000 INFO @ Fri, 16 Oct 2020 04:11:53: 20000000 INFO @ Fri, 16 Oct 2020 04:11:56: 27000000 INFO @ Fri, 16 Oct 2020 04:11:56: 13000000 INFO @ Fri, 16 Oct 2020 04:11:58: 21000000 INFO @ Fri, 16 Oct 2020 04:12:01: 28000000 INFO @ Fri, 16 Oct 2020 04:12:01: 14000000 INFO @ Fri, 16 Oct 2020 04:12:03: 22000000 INFO @ Fri, 16 Oct 2020 04:12:06: 29000000 INFO @ Fri, 16 Oct 2020 04:12:07: 15000000 INFO @ Fri, 16 Oct 2020 04:12:08: 23000000 INFO @ Fri, 16 Oct 2020 04:12:11: 30000000 INFO @ Fri, 16 Oct 2020 04:12:13: 16000000 INFO @ Fri, 16 Oct 2020 04:12:13: 24000000 INFO @ Fri, 16 Oct 2020 04:12:16: 31000000 INFO @ Fri, 16 Oct 2020 04:12:18: 25000000 INFO @ Fri, 16 Oct 2020 04:12:18: 17000000 INFO @ Fri, 16 Oct 2020 04:12:21: 32000000 INFO @ Fri, 16 Oct 2020 04:12:23: 26000000 INFO @ Fri, 16 Oct 2020 04:12:24: 18000000 INFO @ Fri, 16 Oct 2020 04:12:26: 33000000 INFO @ Fri, 16 Oct 2020 04:12:28: 27000000 INFO @ Fri, 16 Oct 2020 04:12:30: 19000000 INFO @ Fri, 16 Oct 2020 04:12:31: 34000000 INFO @ Fri, 16 Oct 2020 04:12:33: 28000000 INFO @ Fri, 16 Oct 2020 04:12:36: 20000000 INFO @ Fri, 16 Oct 2020 04:12:36: 35000000 INFO @ Fri, 16 Oct 2020 04:12:38: 29000000 INFO @ Fri, 16 Oct 2020 04:12:41: 36000000 INFO @ Fri, 16 Oct 2020 04:12:42: 21000000 INFO @ Fri, 16 Oct 2020 04:12:43: 30000000 INFO @ Fri, 16 Oct 2020 04:12:46: 37000000 INFO @ Fri, 16 Oct 2020 04:12:47: 22000000 INFO @ Fri, 16 Oct 2020 04:12:48: 31000000 INFO @ Fri, 16 Oct 2020 04:12:51: 38000000 INFO @ Fri, 16 Oct 2020 04:12:53: 32000000 INFO @ Fri, 16 Oct 2020 04:12:53: 23000000 INFO @ Fri, 16 Oct 2020 04:12:56: 39000000 INFO @ Fri, 16 Oct 2020 04:12:58: 33000000 INFO @ Fri, 16 Oct 2020 04:12:59: 24000000 INFO @ Fri, 16 Oct 2020 04:13:01: 40000000 INFO @ Fri, 16 Oct 2020 04:13:03: 34000000 INFO @ Fri, 16 Oct 2020 04:13:05: 25000000 INFO @ Fri, 16 Oct 2020 04:13:06: 41000000 INFO @ Fri, 16 Oct 2020 04:13:08: 35000000 INFO @ Fri, 16 Oct 2020 04:13:11: 26000000 INFO @ Fri, 16 Oct 2020 04:13:11: 42000000 INFO @ Fri, 16 Oct 2020 04:13:14: 36000000 INFO @ Fri, 16 Oct 2020 04:13:16: 27000000 INFO @ Fri, 16 Oct 2020 04:13:16: 43000000 INFO @ Fri, 16 Oct 2020 04:13:19: 37000000 INFO @ Fri, 16 Oct 2020 04:13:21: 44000000 INFO @ Fri, 16 Oct 2020 04:13:22: 28000000 INFO @ Fri, 16 Oct 2020 04:13:24: 38000000 INFO @ Fri, 16 Oct 2020 04:13:26: 45000000 INFO @ Fri, 16 Oct 2020 04:13:27: 29000000 INFO @ Fri, 16 Oct 2020 04:13:29: 39000000 INFO @ Fri, 16 Oct 2020 04:13:31: 46000000 INFO @ Fri, 16 Oct 2020 04:13:33: 30000000 INFO @ Fri, 16 Oct 2020 04:13:34: 40000000 INFO @ Fri, 16 Oct 2020 04:13:37: 47000000 INFO @ Fri, 16 Oct 2020 04:13:39: 31000000 INFO @ Fri, 16 Oct 2020 04:13:39: 41000000 INFO @ Fri, 16 Oct 2020 04:13:42: 48000000 INFO @ Fri, 16 Oct 2020 04:13:44: 42000000 INFO @ Fri, 16 Oct 2020 04:13:44: 32000000 INFO @ Fri, 16 Oct 2020 04:13:47: 49000000 INFO @ Fri, 16 Oct 2020 04:13:49: 43000000 INFO @ Fri, 16 Oct 2020 04:13:50: 33000000 INFO @ Fri, 16 Oct 2020 04:13:52: 50000000 INFO @ Fri, 16 Oct 2020 04:13:54: 44000000 INFO @ Fri, 16 Oct 2020 04:13:56: 34000000 INFO @ Fri, 16 Oct 2020 04:13:57: 51000000 INFO @ Fri, 16 Oct 2020 04:13:59: 45000000 INFO @ Fri, 16 Oct 2020 04:14:01: 35000000 INFO @ Fri, 16 Oct 2020 04:14:02: 52000000 INFO @ Fri, 16 Oct 2020 04:14:04: 46000000 INFO @ Fri, 16 Oct 2020 04:14:07: 53000000 INFO @ Fri, 16 Oct 2020 04:14:07: 36000000 INFO @ Fri, 16 Oct 2020 04:14:09: 47000000 INFO @ Fri, 16 Oct 2020 04:14:12: 54000000 INFO @ Fri, 16 Oct 2020 04:14:13: 37000000 INFO @ Fri, 16 Oct 2020 04:14:14: 48000000 INFO @ Fri, 16 Oct 2020 04:14:17: 55000000 INFO @ Fri, 16 Oct 2020 04:14:19: 49000000 INFO @ Fri, 16 Oct 2020 04:14:19: 38000000 INFO @ Fri, 16 Oct 2020 04:14:22: 56000000 INFO @ Fri, 16 Oct 2020 04:14:24: 50000000 INFO @ Fri, 16 Oct 2020 04:14:25: 39000000 INFO @ Fri, 16 Oct 2020 04:14:27: 57000000 INFO @ Fri, 16 Oct 2020 04:14:29: 51000000 INFO @ Fri, 16 Oct 2020 04:14:30: 40000000 INFO @ Fri, 16 Oct 2020 04:14:32: 58000000 INFO @ Fri, 16 Oct 2020 04:14:34: 52000000 INFO @ Fri, 16 Oct 2020 04:14:36: 41000000 INFO @ Fri, 16 Oct 2020 04:14:38: 59000000 INFO @ Fri, 16 Oct 2020 04:14:39: 53000000 INFO @ Fri, 16 Oct 2020 04:14:42: 42000000 INFO @ Fri, 16 Oct 2020 04:14:43: 60000000 INFO @ Fri, 16 Oct 2020 04:14:44: 54000000 INFO @ Fri, 16 Oct 2020 04:14:47: 43000000 INFO @ Fri, 16 Oct 2020 04:14:48: 61000000 INFO @ Fri, 16 Oct 2020 04:14:49: 55000000 INFO @ Fri, 16 Oct 2020 04:14:53: 44000000 INFO @ Fri, 16 Oct 2020 04:14:53: 62000000 INFO @ Fri, 16 Oct 2020 04:14:54: 56000000 INFO @ Fri, 16 Oct 2020 04:14:58: 63000000 INFO @ Fri, 16 Oct 2020 04:14:58: 45000000 INFO @ Fri, 16 Oct 2020 04:14:59: 57000000 INFO @ Fri, 16 Oct 2020 04:15:03: 64000000 INFO @ Fri, 16 Oct 2020 04:15:04: 46000000 INFO @ Fri, 16 Oct 2020 04:15:05: 58000000 INFO @ Fri, 16 Oct 2020 04:15:08: 65000000 INFO @ Fri, 16 Oct 2020 04:15:10: 47000000 INFO @ Fri, 16 Oct 2020 04:15:10: 59000000 INFO @ Fri, 16 Oct 2020 04:15:14: 66000000 INFO @ Fri, 16 Oct 2020 04:15:15: 60000000 INFO @ Fri, 16 Oct 2020 04:15:15: 48000000 INFO @ Fri, 16 Oct 2020 04:15:19: 67000000 INFO @ Fri, 16 Oct 2020 04:15:20: 61000000 INFO @ Fri, 16 Oct 2020 04:15:21: 49000000 INFO @ Fri, 16 Oct 2020 04:15:21: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 04:15:21: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 04:15:21: #1 total tags in treatment: 67363161 INFO @ Fri, 16 Oct 2020 04:15:21: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 04:15:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 04:15:22: #1 tags after filtering in treatment: 67363109 INFO @ Fri, 16 Oct 2020 04:15:22: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 04:15:22: #1 finished! INFO @ Fri, 16 Oct 2020 04:15:22: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 04:15:22: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 04:15:25: 62000000 INFO @ Fri, 16 Oct 2020 04:15:26: 50000000 INFO @ Fri, 16 Oct 2020 04:15:30: 63000000 INFO @ Fri, 16 Oct 2020 04:15:30: #2 number of paired peaks: 79226 INFO @ Fri, 16 Oct 2020 04:15:30: start model_add_line... INFO @ Fri, 16 Oct 2020 04:15:31: start X-correlation... INFO @ Fri, 16 Oct 2020 04:15:31: end of X-cor INFO @ Fri, 16 Oct 2020 04:15:31: #2 finished! INFO @ Fri, 16 Oct 2020 04:15:31: #2 predicted fragment length is 209 bps INFO @ Fri, 16 Oct 2020 04:15:31: #2 alternative fragment length(s) may be 209 bps INFO @ Fri, 16 Oct 2020 04:15:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.05_model.r INFO @ Fri, 16 Oct 2020 04:15:31: #3 Call peaks... INFO @ Fri, 16 Oct 2020 04:15:31: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 04:15:32: 51000000 INFO @ Fri, 16 Oct 2020 04:15:35: 64000000 INFO @ Fri, 16 Oct 2020 04:15:38: 52000000 INFO @ Fri, 16 Oct 2020 04:15:41: 65000000 INFO @ Fri, 16 Oct 2020 04:15:43: 53000000 INFO @ Fri, 16 Oct 2020 04:15:46: 66000000 INFO @ Fri, 16 Oct 2020 04:15:50: 54000000 INFO @ Fri, 16 Oct 2020 04:15:51: 67000000 INFO @ Fri, 16 Oct 2020 04:15:53: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 04:15:53: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 04:15:53: #1 total tags in treatment: 67363161 INFO @ Fri, 16 Oct 2020 04:15:53: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 04:15:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 04:15:54: #1 tags after filtering in treatment: 67363109 INFO @ Fri, 16 Oct 2020 04:15:54: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 04:15:54: #1 finished! INFO @ Fri, 16 Oct 2020 04:15:54: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 04:15:54: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 04:15:57: 55000000 INFO @ Fri, 16 Oct 2020 04:16:02: #2 number of paired peaks: 79226 INFO @ Fri, 16 Oct 2020 04:16:02: start model_add_line... INFO @ Fri, 16 Oct 2020 04:16:03: start X-correlation... INFO @ Fri, 16 Oct 2020 04:16:03: end of X-cor INFO @ Fri, 16 Oct 2020 04:16:03: #2 finished! INFO @ Fri, 16 Oct 2020 04:16:03: #2 predicted fragment length is 209 bps INFO @ Fri, 16 Oct 2020 04:16:03: #2 alternative fragment length(s) may be 209 bps INFO @ Fri, 16 Oct 2020 04:16:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.10_model.r INFO @ Fri, 16 Oct 2020 04:16:03: #3 Call peaks... INFO @ Fri, 16 Oct 2020 04:16:03: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 04:16:03: 56000000 INFO @ Fri, 16 Oct 2020 04:16:09: 57000000 INFO @ Fri, 16 Oct 2020 04:16:15: 58000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 04:16:21: 59000000 INFO @ Fri, 16 Oct 2020 04:16:27: 60000000 INFO @ Fri, 16 Oct 2020 04:16:33: 61000000 INFO @ Fri, 16 Oct 2020 04:16:39: 62000000 INFO @ Fri, 16 Oct 2020 04:16:44: 63000000 INFO @ Fri, 16 Oct 2020 04:16:50: 64000000 INFO @ Fri, 16 Oct 2020 04:16:55: 65000000 INFO @ Fri, 16 Oct 2020 04:17:01: 66000000 INFO @ Fri, 16 Oct 2020 04:17:06: 67000000 INFO @ Fri, 16 Oct 2020 04:17:09: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 04:17:09: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 04:17:09: #1 total tags in treatment: 67363161 INFO @ Fri, 16 Oct 2020 04:17:09: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 04:17:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 04:17:10: #1 tags after filtering in treatment: 67363109 INFO @ Fri, 16 Oct 2020 04:17:10: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 04:17:10: #1 finished! INFO @ Fri, 16 Oct 2020 04:17:10: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 04:17:10: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 04:17:18: #2 number of paired peaks: 79226 INFO @ Fri, 16 Oct 2020 04:17:18: start model_add_line... INFO @ Fri, 16 Oct 2020 04:17:19: start X-correlation... INFO @ Fri, 16 Oct 2020 04:17:19: end of X-cor INFO @ Fri, 16 Oct 2020 04:17:19: #2 finished! INFO @ Fri, 16 Oct 2020 04:17:19: #2 predicted fragment length is 209 bps INFO @ Fri, 16 Oct 2020 04:17:19: #2 alternative fragment length(s) may be 209 bps INFO @ Fri, 16 Oct 2020 04:17:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.20_model.r INFO @ Fri, 16 Oct 2020 04:17:19: #3 Call peaks... INFO @ Fri, 16 Oct 2020 04:17:19: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 04:18:14: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 04:18:46: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 04:19:45: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.05_peaks.xls INFO @ Fri, 16 Oct 2020 04:19:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 04:19:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.05_summits.bed INFO @ Fri, 16 Oct 2020 04:19:46: Done! pass1 - making usageList (144 chroms): 7 millis pass2 - checking and writing primary data (44080 records, 4 fields): 43 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 04:20:15: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 04:20:16: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.10_peaks.xls INFO @ Fri, 16 Oct 2020 04:20:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 04:20:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.10_summits.bed INFO @ Fri, 16 Oct 2020 04:20:17: Done! pass1 - making usageList (123 chroms): 4 millis pass2 - checking and writing primary data (29500 records, 4 fields): 30 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 04:21:49: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.20_peaks.xls INFO @ Fri, 16 Oct 2020 04:21:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 04:21:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745096/ERX2745096.20_summits.bed INFO @ Fri, 16 Oct 2020 04:21:50: Done! pass1 - making usageList (102 chroms): 2 millis pass2 - checking and writing primary data (17364 records, 4 fields): 19 millis CompletedMACS2peakCalling