Job ID = 2001680 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T23:31:26 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:35:41 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:45:47 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T23:45:47 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 65,096,943 reads read : 65,096,943 reads written : 65,096,943 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:20:52 65096943 reads; of these: 65096943 (100.00%) were unpaired; of these: 1160775 (1.78%) aligned 0 times 45167851 (69.39%) aligned exactly 1 time 18768317 (28.83%) aligned >1 times 98.22% overall alignment rate Time searching: 01:20:56 Overall time: 01:20:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 5288183 / 63936168 = 0.0827 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 10:59:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:59:00: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:59:00: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:59:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:59:00: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:59:00: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:59:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:59:01: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:59:01: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:59:08: 1000000 INFO @ Fri, 05 Jul 2019 10:59:09: 1000000 INFO @ Fri, 05 Jul 2019 10:59:09: 1000000 INFO @ Fri, 05 Jul 2019 10:59:16: 2000000 INFO @ Fri, 05 Jul 2019 10:59:17: 2000000 INFO @ Fri, 05 Jul 2019 10:59:18: 2000000 INFO @ Fri, 05 Jul 2019 10:59:24: 3000000 INFO @ Fri, 05 Jul 2019 10:59:25: 3000000 INFO @ Fri, 05 Jul 2019 10:59:26: 3000000 INFO @ Fri, 05 Jul 2019 10:59:31: 4000000 INFO @ Fri, 05 Jul 2019 10:59:32: 4000000 INFO @ Fri, 05 Jul 2019 10:59:33: 4000000 INFO @ Fri, 05 Jul 2019 10:59:38: 5000000 INFO @ Fri, 05 Jul 2019 10:59:40: 5000000 INFO @ Fri, 05 Jul 2019 10:59:41: 5000000 INFO @ Fri, 05 Jul 2019 10:59:45: 6000000 INFO @ Fri, 05 Jul 2019 10:59:48: 6000000 INFO @ Fri, 05 Jul 2019 10:59:49: 6000000 INFO @ Fri, 05 Jul 2019 10:59:52: 7000000 INFO @ Fri, 05 Jul 2019 10:59:56: 7000000 INFO @ Fri, 05 Jul 2019 10:59:57: 7000000 INFO @ Fri, 05 Jul 2019 10:59:59: 8000000 INFO @ Fri, 05 Jul 2019 11:00:04: 8000000 INFO @ Fri, 05 Jul 2019 11:00:05: 8000000 INFO @ Fri, 05 Jul 2019 11:00:06: 9000000 INFO @ Fri, 05 Jul 2019 11:00:13: 10000000 INFO @ Fri, 05 Jul 2019 11:00:13: 9000000 INFO @ Fri, 05 Jul 2019 11:00:13: 9000000 INFO @ Fri, 05 Jul 2019 11:00:20: 11000000 INFO @ Fri, 05 Jul 2019 11:00:21: 10000000 INFO @ Fri, 05 Jul 2019 11:00:21: 10000000 INFO @ Fri, 05 Jul 2019 11:00:27: 12000000 INFO @ Fri, 05 Jul 2019 11:00:29: 11000000 INFO @ Fri, 05 Jul 2019 11:00:29: 11000000 INFO @ Fri, 05 Jul 2019 11:00:34: 13000000 INFO @ Fri, 05 Jul 2019 11:00:37: 12000000 INFO @ Fri, 05 Jul 2019 11:00:37: 12000000 INFO @ Fri, 05 Jul 2019 11:00:42: 14000000 INFO @ Fri, 05 Jul 2019 11:00:45: 13000000 INFO @ Fri, 05 Jul 2019 11:00:45: 13000000 INFO @ Fri, 05 Jul 2019 11:00:49: 15000000 INFO @ Fri, 05 Jul 2019 11:00:53: 14000000 INFO @ Fri, 05 Jul 2019 11:00:53: 14000000 INFO @ Fri, 05 Jul 2019 11:00:55: 16000000 INFO @ Fri, 05 Jul 2019 11:01:00: 15000000 INFO @ Fri, 05 Jul 2019 11:01:00: 15000000 INFO @ Fri, 05 Jul 2019 11:01:02: 17000000 INFO @ Fri, 05 Jul 2019 11:01:08: 16000000 INFO @ Fri, 05 Jul 2019 11:01:08: 16000000 INFO @ Fri, 05 Jul 2019 11:01:09: 18000000 INFO @ Fri, 05 Jul 2019 11:01:15: 17000000 INFO @ Fri, 05 Jul 2019 11:01:15: 17000000 INFO @ Fri, 05 Jul 2019 11:01:16: 19000000 INFO @ Fri, 05 Jul 2019 11:01:23: 18000000 INFO @ Fri, 05 Jul 2019 11:01:23: 18000000 INFO @ Fri, 05 Jul 2019 11:01:23: 20000000 INFO @ Fri, 05 Jul 2019 11:01:30: 21000000 INFO @ Fri, 05 Jul 2019 11:01:30: 19000000 INFO @ Fri, 05 Jul 2019 11:01:30: 19000000 INFO @ Fri, 05 Jul 2019 11:01:37: 22000000 INFO @ Fri, 05 Jul 2019 11:01:38: 20000000 INFO @ Fri, 05 Jul 2019 11:01:38: 20000000 INFO @ Fri, 05 Jul 2019 11:01:44: 23000000 INFO @ Fri, 05 Jul 2019 11:01:45: 21000000 INFO @ Fri, 05 Jul 2019 11:01:46: 21000000 INFO @ Fri, 05 Jul 2019 11:01:51: 24000000 INFO @ Fri, 05 Jul 2019 11:01:53: 22000000 INFO @ Fri, 05 Jul 2019 11:01:53: 22000000 INFO @ Fri, 05 Jul 2019 11:01:58: 25000000 INFO @ Fri, 05 Jul 2019 11:02:01: 23000000 INFO @ Fri, 05 Jul 2019 11:02:01: 23000000 INFO @ Fri, 05 Jul 2019 11:02:04: 26000000 INFO @ Fri, 05 Jul 2019 11:02:09: 24000000 INFO @ Fri, 05 Jul 2019 11:02:09: 24000000 INFO @ Fri, 05 Jul 2019 11:02:11: 27000000 INFO @ Fri, 05 Jul 2019 11:02:16: 25000000 INFO @ Fri, 05 Jul 2019 11:02:17: 25000000 INFO @ Fri, 05 Jul 2019 11:02:18: 28000000 INFO @ Fri, 05 Jul 2019 11:02:24: 26000000 INFO @ Fri, 05 Jul 2019 11:02:24: 26000000 INFO @ Fri, 05 Jul 2019 11:02:25: 29000000 INFO @ Fri, 05 Jul 2019 11:02:31: 27000000 INFO @ Fri, 05 Jul 2019 11:02:31: 30000000 INFO @ Fri, 05 Jul 2019 11:02:32: 27000000 INFO @ Fri, 05 Jul 2019 11:02:38: 31000000 INFO @ Fri, 05 Jul 2019 11:02:39: 28000000 INFO @ Fri, 05 Jul 2019 11:02:39: 28000000 INFO @ Fri, 05 Jul 2019 11:02:45: 32000000 INFO @ Fri, 05 Jul 2019 11:02:46: 29000000 INFO @ Fri, 05 Jul 2019 11:02:46: 29000000 INFO @ Fri, 05 Jul 2019 11:02:52: 33000000 INFO @ Fri, 05 Jul 2019 11:02:53: 30000000 INFO @ Fri, 05 Jul 2019 11:02:54: 30000000 INFO @ Fri, 05 Jul 2019 11:02:59: 34000000 INFO @ Fri, 05 Jul 2019 11:03:01: 31000000 INFO @ Fri, 05 Jul 2019 11:03:01: 31000000 INFO @ Fri, 05 Jul 2019 11:03:06: 35000000 INFO @ Fri, 05 Jul 2019 11:03:09: 32000000 INFO @ Fri, 05 Jul 2019 11:03:10: 32000000 INFO @ Fri, 05 Jul 2019 11:03:13: 36000000 INFO @ Fri, 05 Jul 2019 11:03:17: 33000000 INFO @ Fri, 05 Jul 2019 11:03:17: 33000000 INFO @ Fri, 05 Jul 2019 11:03:20: 37000000 INFO @ Fri, 05 Jul 2019 11:03:25: 34000000 INFO @ Fri, 05 Jul 2019 11:03:25: 34000000 INFO @ Fri, 05 Jul 2019 11:03:27: 38000000 INFO @ Fri, 05 Jul 2019 11:03:33: 35000000 INFO @ Fri, 05 Jul 2019 11:03:33: 35000000 INFO @ Fri, 05 Jul 2019 11:03:34: 39000000 INFO @ Fri, 05 Jul 2019 11:03:40: 36000000 INFO @ Fri, 05 Jul 2019 11:03:40: 36000000 INFO @ Fri, 05 Jul 2019 11:03:41: 40000000 INFO @ Fri, 05 Jul 2019 11:03:47: 41000000 INFO @ Fri, 05 Jul 2019 11:03:48: 37000000 INFO @ Fri, 05 Jul 2019 11:03:48: 37000000 INFO @ Fri, 05 Jul 2019 11:03:54: 42000000 INFO @ Fri, 05 Jul 2019 11:03:56: 38000000 INFO @ Fri, 05 Jul 2019 11:03:56: 38000000 INFO @ Fri, 05 Jul 2019 11:04:01: 43000000 INFO @ Fri, 05 Jul 2019 11:04:03: 39000000 INFO @ Fri, 05 Jul 2019 11:04:03: 39000000 INFO @ Fri, 05 Jul 2019 11:04:08: 44000000 INFO @ Fri, 05 Jul 2019 11:04:11: 40000000 INFO @ Fri, 05 Jul 2019 11:04:11: 40000000 INFO @ Fri, 05 Jul 2019 11:04:15: 45000000 INFO @ Fri, 05 Jul 2019 11:04:18: 41000000 INFO @ Fri, 05 Jul 2019 11:04:18: 41000000 INFO @ Fri, 05 Jul 2019 11:04:22: 46000000 INFO @ Fri, 05 Jul 2019 11:04:26: 42000000 INFO @ Fri, 05 Jul 2019 11:04:26: 42000000 INFO @ Fri, 05 Jul 2019 11:04:29: 47000000 INFO @ Fri, 05 Jul 2019 11:04:34: 43000000 INFO @ Fri, 05 Jul 2019 11:04:34: 43000000 INFO @ Fri, 05 Jul 2019 11:04:36: 48000000 INFO @ Fri, 05 Jul 2019 11:04:41: 44000000 INFO @ Fri, 05 Jul 2019 11:04:42: 44000000 INFO @ Fri, 05 Jul 2019 11:04:44: 49000000 INFO @ Fri, 05 Jul 2019 11:04:49: 45000000 INFO @ Fri, 05 Jul 2019 11:04:50: 45000000 INFO @ Fri, 05 Jul 2019 11:04:52: 50000000 INFO @ Fri, 05 Jul 2019 11:04:57: 46000000 INFO @ Fri, 05 Jul 2019 11:04:58: 46000000 INFO @ Fri, 05 Jul 2019 11:04:59: 51000000 INFO @ Fri, 05 Jul 2019 11:05:05: 47000000 INFO @ Fri, 05 Jul 2019 11:05:06: 47000000 INFO @ Fri, 05 Jul 2019 11:05:06: 52000000 INFO @ Fri, 05 Jul 2019 11:05:13: 53000000 INFO @ Fri, 05 Jul 2019 11:05:13: 48000000 INFO @ Fri, 05 Jul 2019 11:05:14: 48000000 INFO @ Fri, 05 Jul 2019 11:05:20: 54000000 INFO @ Fri, 05 Jul 2019 11:05:21: 49000000 INFO @ Fri, 05 Jul 2019 11:05:22: 49000000 INFO @ Fri, 05 Jul 2019 11:05:26: 55000000 INFO @ Fri, 05 Jul 2019 11:05:29: 50000000 INFO @ Fri, 05 Jul 2019 11:05:29: 50000000 INFO @ Fri, 05 Jul 2019 11:05:33: 56000000 INFO @ Fri, 05 Jul 2019 11:05:36: 51000000 INFO @ Fri, 05 Jul 2019 11:05:37: 51000000 INFO @ Fri, 05 Jul 2019 11:05:40: 57000000 INFO @ Fri, 05 Jul 2019 11:05:44: 52000000 INFO @ Fri, 05 Jul 2019 11:05:45: 52000000 INFO @ Fri, 05 Jul 2019 11:05:47: 58000000 INFO @ Fri, 05 Jul 2019 11:05:52: 53000000 INFO @ Fri, 05 Jul 2019 11:05:52: 53000000 INFO @ Fri, 05 Jul 2019 11:05:53: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 11:05:53: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 11:05:53: #1 total tags in treatment: 58647985 INFO @ Fri, 05 Jul 2019 11:05:53: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 11:05:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 11:05:54: #1 tags after filtering in treatment: 58647931 INFO @ Fri, 05 Jul 2019 11:05:54: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 11:05:54: #1 finished! INFO @ Fri, 05 Jul 2019 11:05:54: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 11:05:54: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 11:05:59: 54000000 INFO @ Fri, 05 Jul 2019 11:06:00: 54000000 INFO @ Fri, 05 Jul 2019 11:06:00: #2 number of paired peaks: 8994 INFO @ Fri, 05 Jul 2019 11:06:00: start model_add_line... INFO @ Fri, 05 Jul 2019 11:06:01: start X-correlation... INFO @ Fri, 05 Jul 2019 11:06:01: end of X-cor INFO @ Fri, 05 Jul 2019 11:06:01: #2 finished! INFO @ Fri, 05 Jul 2019 11:06:01: #2 predicted fragment length is 88 bps INFO @ Fri, 05 Jul 2019 11:06:01: #2 alternative fragment length(s) may be 88 bps INFO @ Fri, 05 Jul 2019 11:06:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.20_model.r WARNING @ Fri, 05 Jul 2019 11:06:01: #2 Since the d (88) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 11:06:01: #2 You may need to consider one of the other alternative d(s): 88 WARNING @ Fri, 05 Jul 2019 11:06:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 11:06:01: #3 Call peaks... INFO @ Fri, 05 Jul 2019 11:06:01: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 11:06:07: 55000000 INFO @ Fri, 05 Jul 2019 11:06:07: 55000000 INFO @ Fri, 05 Jul 2019 11:06:14: 56000000 INFO @ Fri, 05 Jul 2019 11:06:14: 56000000 INFO @ Fri, 05 Jul 2019 11:06:22: 57000000 INFO @ Fri, 05 Jul 2019 11:06:22: 57000000 INFO @ Fri, 05 Jul 2019 11:06:29: 58000000 INFO @ Fri, 05 Jul 2019 11:06:29: 58000000 INFO @ Fri, 05 Jul 2019 11:06:35: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 11:06:35: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 11:06:35: #1 total tags in treatment: 58647985 INFO @ Fri, 05 Jul 2019 11:06:35: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 11:06:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 11:06:35: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 11:06:35: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 11:06:35: #1 total tags in treatment: 58647985 INFO @ Fri, 05 Jul 2019 11:06:35: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 11:06:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 11:06:36: #1 tags after filtering in treatment: 58647931 INFO @ Fri, 05 Jul 2019 11:06:36: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 11:06:36: #1 finished! INFO @ Fri, 05 Jul 2019 11:06:36: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 11:06:36: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 11:06:36: #1 tags after filtering in treatment: 58647931 INFO @ Fri, 05 Jul 2019 11:06:36: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 11:06:36: #1 finished! INFO @ Fri, 05 Jul 2019 11:06:36: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 11:06:36: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 11:06:42: #2 number of paired peaks: 8994 INFO @ Fri, 05 Jul 2019 11:06:42: start model_add_line... INFO @ Fri, 05 Jul 2019 11:06:43: #2 number of paired peaks: 8994 INFO @ Fri, 05 Jul 2019 11:06:43: start model_add_line... INFO @ Fri, 05 Jul 2019 11:06:43: start X-correlation... INFO @ Fri, 05 Jul 2019 11:06:43: end of X-cor INFO @ Fri, 05 Jul 2019 11:06:43: #2 finished! INFO @ Fri, 05 Jul 2019 11:06:43: #2 predicted fragment length is 88 bps INFO @ Fri, 05 Jul 2019 11:06:43: #2 alternative fragment length(s) may be 88 bps INFO @ Fri, 05 Jul 2019 11:06:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.05_model.r WARNING @ Fri, 05 Jul 2019 11:06:43: #2 Since the d (88) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 11:06:43: #2 You may need to consider one of the other alternative d(s): 88 WARNING @ Fri, 05 Jul 2019 11:06:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 11:06:43: #3 Call peaks... INFO @ Fri, 05 Jul 2019 11:06:43: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 11:06:43: start X-correlation... INFO @ Fri, 05 Jul 2019 11:06:43: end of X-cor INFO @ Fri, 05 Jul 2019 11:06:43: #2 finished! INFO @ Fri, 05 Jul 2019 11:06:43: #2 predicted fragment length is 88 bps INFO @ Fri, 05 Jul 2019 11:06:43: #2 alternative fragment length(s) may be 88 bps INFO @ Fri, 05 Jul 2019 11:06:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.10_model.r WARNING @ Fri, 05 Jul 2019 11:06:43: #2 Since the d (88) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 11:06:43: #2 You may need to consider one of the other alternative d(s): 88 WARNING @ Fri, 05 Jul 2019 11:06:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 11:06:43: #3 Call peaks... INFO @ Fri, 05 Jul 2019 11:06:43: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 11:09:02: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 11:09:44: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 11:09:44: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 11:10:34: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.20_peaks.xls INFO @ Fri, 05 Jul 2019 11:10:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 11:10:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.20_summits.bed INFO @ Fri, 05 Jul 2019 11:10:34: Done! pass1 - making usageList (34 chroms): 2 millis pass2 - checking and writing primary data (273 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 11:11:16: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.05_peaks.xls INFO @ Fri, 05 Jul 2019 11:11:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 11:11:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.05_summits.bed INFO @ Fri, 05 Jul 2019 11:11:16: Done! pass1 - making usageList (91 chroms): 4 millis pass2 - checking and writing primary data (5985 records, 4 fields): 19 millis INFO @ Fri, 05 Jul 2019 11:11:17: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.10_peaks.xls INFO @ Fri, 05 Jul 2019 11:11:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 11:11:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101995/ERX101995.10_summits.bed INFO @ Fri, 05 Jul 2019 11:11:17: Done! pass1 - making usageList (52 chroms): 1 millis pass2 - checking and writing primary data (1356 records, 4 fields): 284 millis CompletedMACS2peakCalling CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。