Job ID = 2001654 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T22:12:03 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - mbedtls_ssl_handshake returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:03 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - ktls_handshake failed while accessing '130.14.250.24' from '172.19.7.17' 2019-07-04T22:12:03 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - Failed to create TLS stream for 'sra-download.ncbi.nlm.nih.gov' (130.14.250.24) from '172.19.7.17' 2019-07-04T22:12:03 fasterq-dump.2.9.6 err: connection failed while opening file within cryptographic module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005104.2' 2019-07-04T22:14:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:24:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 70,234,582 reads read : 70,234,582 reads written : 70,234,582 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:57:53 70234582 reads; of these: 70234582 (100.00%) were unpaired; of these: 5371193 (7.65%) aligned 0 times 45018398 (64.10%) aligned exactly 1 time 19844991 (28.26%) aligned >1 times 92.35% overall alignment rate Time searching: 01:57:56 Overall time: 01:57:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 6776188 / 64863389 = 0.1045 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 10:10:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:10:14: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:10:14: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:10:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:10:14: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:10:14: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:10:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 10:10:14: #1 read tag files... INFO @ Fri, 05 Jul 2019 10:10:14: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 10:10:23: 1000000 INFO @ Fri, 05 Jul 2019 10:10:23: 1000000 INFO @ Fri, 05 Jul 2019 10:10:24: 1000000 INFO @ Fri, 05 Jul 2019 10:10:31: 2000000 INFO @ Fri, 05 Jul 2019 10:10:31: 2000000 INFO @ Fri, 05 Jul 2019 10:10:31: 2000000 INFO @ Fri, 05 Jul 2019 10:10:39: 3000000 INFO @ Fri, 05 Jul 2019 10:10:39: 3000000 INFO @ Fri, 05 Jul 2019 10:10:39: 3000000 INFO @ Fri, 05 Jul 2019 10:10:46: 4000000 INFO @ Fri, 05 Jul 2019 10:10:47: 4000000 INFO @ Fri, 05 Jul 2019 10:10:47: 4000000 INFO @ Fri, 05 Jul 2019 10:10:54: 5000000 INFO @ Fri, 05 Jul 2019 10:10:56: 5000000 INFO @ Fri, 05 Jul 2019 10:10:56: 5000000 INFO @ Fri, 05 Jul 2019 10:11:01: 6000000 INFO @ Fri, 05 Jul 2019 10:11:04: 6000000 INFO @ Fri, 05 Jul 2019 10:11:04: 6000000 INFO @ Fri, 05 Jul 2019 10:11:08: 7000000 INFO @ Fri, 05 Jul 2019 10:11:11: 7000000 INFO @ Fri, 05 Jul 2019 10:11:12: 7000000 INFO @ Fri, 05 Jul 2019 10:11:15: 8000000 INFO @ Fri, 05 Jul 2019 10:11:19: 8000000 INFO @ Fri, 05 Jul 2019 10:11:20: 8000000 INFO @ Fri, 05 Jul 2019 10:11:22: 9000000 INFO @ Fri, 05 Jul 2019 10:11:27: 9000000 INFO @ Fri, 05 Jul 2019 10:11:28: 9000000 INFO @ Fri, 05 Jul 2019 10:11:30: 10000000 INFO @ Fri, 05 Jul 2019 10:11:35: 10000000 INFO @ Fri, 05 Jul 2019 10:11:36: 10000000 INFO @ Fri, 05 Jul 2019 10:11:37: 11000000 INFO @ Fri, 05 Jul 2019 10:11:43: 11000000 INFO @ Fri, 05 Jul 2019 10:11:44: 12000000 INFO @ Fri, 05 Jul 2019 10:11:44: 11000000 INFO @ Fri, 05 Jul 2019 10:11:51: 13000000 INFO @ Fri, 05 Jul 2019 10:11:51: 12000000 INFO @ Fri, 05 Jul 2019 10:11:52: 12000000 INFO @ Fri, 05 Jul 2019 10:11:58: 14000000 INFO @ Fri, 05 Jul 2019 10:11:59: 13000000 INFO @ Fri, 05 Jul 2019 10:12:00: 13000000 INFO @ Fri, 05 Jul 2019 10:12:06: 15000000 INFO @ Fri, 05 Jul 2019 10:12:07: 14000000 INFO @ Fri, 05 Jul 2019 10:12:08: 14000000 INFO @ Fri, 05 Jul 2019 10:12:13: 16000000 INFO @ Fri, 05 Jul 2019 10:12:15: 15000000 INFO @ Fri, 05 Jul 2019 10:12:16: 15000000 INFO @ Fri, 05 Jul 2019 10:12:20: 17000000 INFO @ Fri, 05 Jul 2019 10:12:23: 16000000 INFO @ Fri, 05 Jul 2019 10:12:24: 16000000 INFO @ Fri, 05 Jul 2019 10:12:28: 18000000 INFO @ Fri, 05 Jul 2019 10:12:31: 17000000 INFO @ Fri, 05 Jul 2019 10:12:32: 17000000 INFO @ Fri, 05 Jul 2019 10:12:35: 19000000 INFO @ Fri, 05 Jul 2019 10:12:39: 18000000 INFO @ Fri, 05 Jul 2019 10:12:40: 18000000 INFO @ Fri, 05 Jul 2019 10:12:42: 20000000 INFO @ Fri, 05 Jul 2019 10:12:47: 19000000 INFO @ Fri, 05 Jul 2019 10:12:48: 19000000 INFO @ Fri, 05 Jul 2019 10:12:49: 21000000 INFO @ Fri, 05 Jul 2019 10:12:55: 20000000 INFO @ Fri, 05 Jul 2019 10:12:56: 20000000 INFO @ Fri, 05 Jul 2019 10:12:57: 22000000 INFO @ Fri, 05 Jul 2019 10:13:04: 21000000 INFO @ Fri, 05 Jul 2019 10:13:04: 23000000 INFO @ Fri, 05 Jul 2019 10:13:04: 21000000 INFO @ Fri, 05 Jul 2019 10:13:11: 24000000 INFO @ Fri, 05 Jul 2019 10:13:12: 22000000 INFO @ Fri, 05 Jul 2019 10:13:12: 22000000 INFO @ Fri, 05 Jul 2019 10:13:19: 25000000 INFO @ Fri, 05 Jul 2019 10:13:20: 23000000 INFO @ Fri, 05 Jul 2019 10:13:21: 23000000 INFO @ Fri, 05 Jul 2019 10:13:26: 26000000 INFO @ Fri, 05 Jul 2019 10:13:29: 24000000 INFO @ Fri, 05 Jul 2019 10:13:29: 24000000 INFO @ Fri, 05 Jul 2019 10:13:33: 27000000 INFO @ Fri, 05 Jul 2019 10:13:37: 25000000 INFO @ Fri, 05 Jul 2019 10:13:37: 25000000 INFO @ Fri, 05 Jul 2019 10:13:41: 28000000 INFO @ Fri, 05 Jul 2019 10:13:45: 26000000 INFO @ Fri, 05 Jul 2019 10:13:45: 26000000 INFO @ Fri, 05 Jul 2019 10:13:49: 29000000 INFO @ Fri, 05 Jul 2019 10:13:53: 27000000 INFO @ Fri, 05 Jul 2019 10:13:54: 27000000 INFO @ Fri, 05 Jul 2019 10:13:56: 30000000 INFO @ Fri, 05 Jul 2019 10:14:01: 28000000 INFO @ Fri, 05 Jul 2019 10:14:03: 28000000 INFO @ Fri, 05 Jul 2019 10:14:04: 31000000 INFO @ Fri, 05 Jul 2019 10:14:08: 29000000 INFO @ Fri, 05 Jul 2019 10:14:12: 32000000 INFO @ Fri, 05 Jul 2019 10:14:12: 29000000 INFO @ Fri, 05 Jul 2019 10:14:16: 30000000 INFO @ Fri, 05 Jul 2019 10:14:20: 33000000 INFO @ Fri, 05 Jul 2019 10:14:21: 30000000 INFO @ Fri, 05 Jul 2019 10:14:24: 31000000 INFO @ Fri, 05 Jul 2019 10:14:27: 34000000 INFO @ Fri, 05 Jul 2019 10:14:30: 31000000 INFO @ Fri, 05 Jul 2019 10:14:32: 32000000 INFO @ Fri, 05 Jul 2019 10:14:35: 35000000 INFO @ Fri, 05 Jul 2019 10:14:39: 32000000 INFO @ Fri, 05 Jul 2019 10:14:40: 33000000 INFO @ Fri, 05 Jul 2019 10:14:42: 36000000 INFO @ Fri, 05 Jul 2019 10:14:48: 34000000 INFO @ Fri, 05 Jul 2019 10:14:48: 33000000 INFO @ Fri, 05 Jul 2019 10:14:49: 37000000 INFO @ Fri, 05 Jul 2019 10:14:55: 35000000 INFO @ Fri, 05 Jul 2019 10:14:57: 38000000 INFO @ Fri, 05 Jul 2019 10:14:57: 34000000 INFO @ Fri, 05 Jul 2019 10:15:03: 36000000 INFO @ Fri, 05 Jul 2019 10:15:05: 39000000 INFO @ Fri, 05 Jul 2019 10:15:07: 35000000 INFO @ Fri, 05 Jul 2019 10:15:11: 37000000 INFO @ Fri, 05 Jul 2019 10:15:13: 40000000 INFO @ Fri, 05 Jul 2019 10:15:15: 36000000 INFO @ Fri, 05 Jul 2019 10:15:19: 38000000 INFO @ Fri, 05 Jul 2019 10:15:20: 41000000 INFO @ Fri, 05 Jul 2019 10:15:24: 37000000 INFO @ Fri, 05 Jul 2019 10:15:27: 39000000 INFO @ Fri, 05 Jul 2019 10:15:28: 42000000 INFO @ Fri, 05 Jul 2019 10:15:34: 38000000 INFO @ Fri, 05 Jul 2019 10:15:34: 40000000 INFO @ Fri, 05 Jul 2019 10:15:36: 43000000 INFO @ Fri, 05 Jul 2019 10:15:42: 41000000 INFO @ Fri, 05 Jul 2019 10:15:43: 39000000 INFO @ Fri, 05 Jul 2019 10:15:43: 44000000 INFO @ Fri, 05 Jul 2019 10:15:50: 42000000 INFO @ Fri, 05 Jul 2019 10:15:51: 45000000 INFO @ Fri, 05 Jul 2019 10:15:51: 40000000 INFO @ Fri, 05 Jul 2019 10:15:58: 43000000 INFO @ Fri, 05 Jul 2019 10:15:58: 46000000 INFO @ Fri, 05 Jul 2019 10:16:01: 41000000 INFO @ Fri, 05 Jul 2019 10:16:06: 44000000 INFO @ Fri, 05 Jul 2019 10:16:06: 47000000 INFO @ Fri, 05 Jul 2019 10:16:10: 42000000 INFO @ Fri, 05 Jul 2019 10:16:13: 48000000 INFO @ Fri, 05 Jul 2019 10:16:14: 45000000 INFO @ Fri, 05 Jul 2019 10:16:19: 43000000 INFO @ Fri, 05 Jul 2019 10:16:20: 49000000 INFO @ Fri, 05 Jul 2019 10:16:21: 46000000 INFO @ Fri, 05 Jul 2019 10:16:27: 50000000 INFO @ Fri, 05 Jul 2019 10:16:27: 44000000 INFO @ Fri, 05 Jul 2019 10:16:29: 47000000 INFO @ Fri, 05 Jul 2019 10:16:35: 51000000 INFO @ Fri, 05 Jul 2019 10:16:36: 45000000 INFO @ Fri, 05 Jul 2019 10:16:37: 48000000 INFO @ Fri, 05 Jul 2019 10:16:42: 52000000 INFO @ Fri, 05 Jul 2019 10:16:45: 49000000 INFO @ Fri, 05 Jul 2019 10:16:45: 46000000 INFO @ Fri, 05 Jul 2019 10:16:49: 53000000 INFO @ Fri, 05 Jul 2019 10:16:52: 50000000 INFO @ Fri, 05 Jul 2019 10:16:54: 47000000 INFO @ Fri, 05 Jul 2019 10:16:56: 54000000 INFO @ Fri, 05 Jul 2019 10:17:00: 51000000 INFO @ Fri, 05 Jul 2019 10:17:03: 55000000 INFO @ Fri, 05 Jul 2019 10:17:03: 48000000 INFO @ Fri, 05 Jul 2019 10:17:08: 52000000 INFO @ Fri, 05 Jul 2019 10:17:11: 56000000 INFO @ Fri, 05 Jul 2019 10:17:11: 49000000 INFO @ Fri, 05 Jul 2019 10:17:16: 53000000 INFO @ Fri, 05 Jul 2019 10:17:18: 57000000 INFO @ Fri, 05 Jul 2019 10:17:19: 50000000 INFO @ Fri, 05 Jul 2019 10:17:24: 54000000 INFO @ Fri, 05 Jul 2019 10:17:25: 58000000 INFO @ Fri, 05 Jul 2019 10:17:26: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 10:17:26: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 10:17:26: #1 total tags in treatment: 58087201 INFO @ Fri, 05 Jul 2019 10:17:26: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 10:17:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 10:17:27: 51000000 INFO @ Fri, 05 Jul 2019 10:17:28: #1 tags after filtering in treatment: 58087145 INFO @ Fri, 05 Jul 2019 10:17:28: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 10:17:28: #1 finished! INFO @ Fri, 05 Jul 2019 10:17:28: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 10:17:28: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 10:17:32: 55000000 INFO @ Fri, 05 Jul 2019 10:17:34: #2 number of paired peaks: 10534 INFO @ Fri, 05 Jul 2019 10:17:34: start model_add_line... INFO @ Fri, 05 Jul 2019 10:17:35: start X-correlation... INFO @ Fri, 05 Jul 2019 10:17:35: end of X-cor INFO @ Fri, 05 Jul 2019 10:17:35: #2 finished! INFO @ Fri, 05 Jul 2019 10:17:35: #2 predicted fragment length is 91 bps INFO @ Fri, 05 Jul 2019 10:17:35: #2 alternative fragment length(s) may be 91 bps INFO @ Fri, 05 Jul 2019 10:17:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.05_model.r WARNING @ Fri, 05 Jul 2019 10:17:35: #2 Since the d (91) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 10:17:35: #2 You may need to consider one of the other alternative d(s): 91 WARNING @ Fri, 05 Jul 2019 10:17:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 10:17:35: #3 Call peaks... INFO @ Fri, 05 Jul 2019 10:17:35: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 10:17:35: 52000000 INFO @ Fri, 05 Jul 2019 10:17:40: 56000000 INFO @ Fri, 05 Jul 2019 10:17:44: 53000000 INFO @ Fri, 05 Jul 2019 10:17:47: 57000000 INFO @ Fri, 05 Jul 2019 10:17:52: 54000000 INFO @ Fri, 05 Jul 2019 10:17:55: 58000000 INFO @ Fri, 05 Jul 2019 10:17:56: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 10:17:56: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 10:17:56: #1 total tags in treatment: 58087201 INFO @ Fri, 05 Jul 2019 10:17:56: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 10:17:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 10:17:58: #1 tags after filtering in treatment: 58087145 INFO @ Fri, 05 Jul 2019 10:17:58: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 10:17:58: #1 finished! INFO @ Fri, 05 Jul 2019 10:17:58: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 10:17:58: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 10:17:59: 55000000 INFO @ Fri, 05 Jul 2019 10:18:04: #2 number of paired peaks: 10534 INFO @ Fri, 05 Jul 2019 10:18:04: start model_add_line... INFO @ Fri, 05 Jul 2019 10:18:05: start X-correlation... INFO @ Fri, 05 Jul 2019 10:18:05: end of X-cor INFO @ Fri, 05 Jul 2019 10:18:05: #2 finished! INFO @ Fri, 05 Jul 2019 10:18:05: #2 predicted fragment length is 91 bps INFO @ Fri, 05 Jul 2019 10:18:05: #2 alternative fragment length(s) may be 91 bps INFO @ Fri, 05 Jul 2019 10:18:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.10_model.r WARNING @ Fri, 05 Jul 2019 10:18:05: #2 Since the d (91) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 10:18:05: #2 You may need to consider one of the other alternative d(s): 91 WARNING @ Fri, 05 Jul 2019 10:18:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 10:18:05: #3 Call peaks... INFO @ Fri, 05 Jul 2019 10:18:05: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 10:18:07: 56000000 INFO @ Fri, 05 Jul 2019 10:18:15: 57000000 INFO @ Fri, 05 Jul 2019 10:18:23: 58000000 INFO @ Fri, 05 Jul 2019 10:18:25: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 10:18:25: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 10:18:25: #1 total tags in treatment: 58087201 INFO @ Fri, 05 Jul 2019 10:18:25: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 10:18:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 10:18:26: #1 tags after filtering in treatment: 58087145 INFO @ Fri, 05 Jul 2019 10:18:26: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 10:18:26: #1 finished! INFO @ Fri, 05 Jul 2019 10:18:26: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 10:18:26: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 10:18:33: #2 number of paired peaks: 10534 INFO @ Fri, 05 Jul 2019 10:18:33: start model_add_line... INFO @ Fri, 05 Jul 2019 10:18:34: start X-correlation... INFO @ Fri, 05 Jul 2019 10:18:35: end of X-cor INFO @ Fri, 05 Jul 2019 10:18:35: #2 finished! INFO @ Fri, 05 Jul 2019 10:18:35: #2 predicted fragment length is 91 bps INFO @ Fri, 05 Jul 2019 10:18:35: #2 alternative fragment length(s) may be 91 bps INFO @ Fri, 05 Jul 2019 10:18:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.20_model.r WARNING @ Fri, 05 Jul 2019 10:18:35: #2 Since the d (91) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 10:18:35: #2 You may need to consider one of the other alternative d(s): 91 WARNING @ Fri, 05 Jul 2019 10:18:35: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 10:18:35: #3 Call peaks... INFO @ Fri, 05 Jul 2019 10:18:35: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 10:20:34: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 10:21:01: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 10:21:32: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 10:22:01: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.05_peaks.xls INFO @ Fri, 05 Jul 2019 10:22:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 10:22:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.05_summits.bed INFO @ Fri, 05 Jul 2019 10:22:02: Done! pass1 - making usageList (147 chroms): 13 millis pass2 - checking and writing primary data (35286 records, 4 fields): 50 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 10:22:28: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.10_peaks.xls INFO @ Fri, 05 Jul 2019 10:22:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 10:22:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.10_summits.bed INFO @ Fri, 05 Jul 2019 10:22:28: Done! pass1 - making usageList (97 chroms): 3 millis pass2 - checking and writing primary data (15947 records, 4 fields): 25 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 10:23:00: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.20_peaks.xls INFO @ Fri, 05 Jul 2019 10:23:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 10:23:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101969/ERX101969.20_summits.bed INFO @ Fri, 05 Jul 2019 10:23:00: Done! pass1 - making usageList (49 chroms): 1 millis pass2 - checking and writing primary data (4067 records, 4 fields): 9 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。