Job ID = 2001647 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T22:05:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:06:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:09:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:19 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:24 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:04 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:34 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:24:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 93,014,172 reads read : 93,014,172 reads written : 93,014,172 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:13:21 93014172 reads; of these: 93014172 (100.00%) were unpaired; of these: 1569560 (1.69%) aligned 0 times 76580826 (82.33%) aligned exactly 1 time 14863786 (15.98%) aligned >1 times 98.31% overall alignment rate Time searching: 01:13:24 Overall time: 01:13:24 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 18212455 / 91444612 = 0.1992 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 09:18:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:18:07: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:18:07: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:18:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:18:08: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:18:08: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:18:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:18:09: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:18:09: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:18:15: 1000000 INFO @ Fri, 05 Jul 2019 09:18:17: 1000000 INFO @ Fri, 05 Jul 2019 09:18:20: 1000000 INFO @ Fri, 05 Jul 2019 09:18:23: 2000000 INFO @ Fri, 05 Jul 2019 09:18:25: 2000000 INFO @ Fri, 05 Jul 2019 09:18:30: 2000000 INFO @ Fri, 05 Jul 2019 09:18:31: 3000000 INFO @ Fri, 05 Jul 2019 09:18:34: 3000000 INFO @ Fri, 05 Jul 2019 09:18:38: 4000000 INFO @ Fri, 05 Jul 2019 09:18:40: 3000000 INFO @ Fri, 05 Jul 2019 09:18:42: 4000000 INFO @ Fri, 05 Jul 2019 09:18:46: 5000000 INFO @ Fri, 05 Jul 2019 09:18:49: 4000000 INFO @ Fri, 05 Jul 2019 09:18:50: 5000000 INFO @ Fri, 05 Jul 2019 09:18:53: 6000000 INFO @ Fri, 05 Jul 2019 09:18:58: 6000000 INFO @ Fri, 05 Jul 2019 09:18:59: 5000000 INFO @ Fri, 05 Jul 2019 09:19:00: 7000000 INFO @ Fri, 05 Jul 2019 09:19:07: 7000000 INFO @ Fri, 05 Jul 2019 09:19:08: 8000000 INFO @ Fri, 05 Jul 2019 09:19:09: 6000000 INFO @ Fri, 05 Jul 2019 09:19:15: 8000000 INFO @ Fri, 05 Jul 2019 09:19:16: 9000000 INFO @ Fri, 05 Jul 2019 09:19:19: 7000000 INFO @ Fri, 05 Jul 2019 09:19:23: 9000000 INFO @ Fri, 05 Jul 2019 09:19:23: 10000000 INFO @ Fri, 05 Jul 2019 09:19:28: 8000000 INFO @ Fri, 05 Jul 2019 09:19:31: 11000000 INFO @ Fri, 05 Jul 2019 09:19:31: 10000000 INFO @ Fri, 05 Jul 2019 09:19:38: 9000000 INFO @ Fri, 05 Jul 2019 09:19:39: 12000000 INFO @ Fri, 05 Jul 2019 09:19:39: 11000000 INFO @ Fri, 05 Jul 2019 09:19:46: 13000000 INFO @ Fri, 05 Jul 2019 09:19:47: 12000000 INFO @ Fri, 05 Jul 2019 09:19:47: 10000000 INFO @ Fri, 05 Jul 2019 09:19:54: 14000000 INFO @ Fri, 05 Jul 2019 09:19:55: 13000000 INFO @ Fri, 05 Jul 2019 09:19:57: 11000000 INFO @ Fri, 05 Jul 2019 09:20:02: 15000000 INFO @ Fri, 05 Jul 2019 09:20:04: 14000000 INFO @ Fri, 05 Jul 2019 09:20:07: 12000000 INFO @ Fri, 05 Jul 2019 09:20:09: 16000000 INFO @ Fri, 05 Jul 2019 09:20:12: 15000000 INFO @ Fri, 05 Jul 2019 09:20:17: 17000000 INFO @ Fri, 05 Jul 2019 09:20:17: 13000000 INFO @ Fri, 05 Jul 2019 09:20:20: 16000000 INFO @ Fri, 05 Jul 2019 09:20:24: 18000000 INFO @ Fri, 05 Jul 2019 09:20:27: 14000000 INFO @ Fri, 05 Jul 2019 09:20:28: 17000000 INFO @ Fri, 05 Jul 2019 09:20:32: 19000000 INFO @ Fri, 05 Jul 2019 09:20:36: 18000000 INFO @ Fri, 05 Jul 2019 09:20:36: 15000000 INFO @ Fri, 05 Jul 2019 09:20:40: 20000000 INFO @ Fri, 05 Jul 2019 09:20:44: 19000000 INFO @ Fri, 05 Jul 2019 09:20:46: 16000000 INFO @ Fri, 05 Jul 2019 09:20:48: 21000000 INFO @ Fri, 05 Jul 2019 09:20:53: 20000000 INFO @ Fri, 05 Jul 2019 09:20:56: 22000000 INFO @ Fri, 05 Jul 2019 09:20:56: 17000000 INFO @ Fri, 05 Jul 2019 09:21:01: 21000000 INFO @ Fri, 05 Jul 2019 09:21:03: 23000000 INFO @ Fri, 05 Jul 2019 09:21:06: 18000000 INFO @ Fri, 05 Jul 2019 09:21:09: 22000000 INFO @ Fri, 05 Jul 2019 09:21:11: 24000000 INFO @ Fri, 05 Jul 2019 09:21:16: 19000000 INFO @ Fri, 05 Jul 2019 09:21:17: 23000000 INFO @ Fri, 05 Jul 2019 09:21:18: 25000000 INFO @ Fri, 05 Jul 2019 09:21:25: 24000000 INFO @ Fri, 05 Jul 2019 09:21:25: 20000000 INFO @ Fri, 05 Jul 2019 09:21:25: 26000000 INFO @ Fri, 05 Jul 2019 09:21:33: 27000000 INFO @ Fri, 05 Jul 2019 09:21:33: 25000000 INFO @ Fri, 05 Jul 2019 09:21:35: 21000000 INFO @ Fri, 05 Jul 2019 09:21:41: 28000000 INFO @ Fri, 05 Jul 2019 09:21:41: 26000000 INFO @ Fri, 05 Jul 2019 09:21:44: 22000000 INFO @ Fri, 05 Jul 2019 09:21:48: 29000000 INFO @ Fri, 05 Jul 2019 09:21:49: 27000000 INFO @ Fri, 05 Jul 2019 09:21:54: 23000000 INFO @ Fri, 05 Jul 2019 09:21:56: 30000000 INFO @ Fri, 05 Jul 2019 09:21:57: 28000000 INFO @ Fri, 05 Jul 2019 09:22:04: 24000000 INFO @ Fri, 05 Jul 2019 09:22:04: 31000000 INFO @ Fri, 05 Jul 2019 09:22:05: 29000000 INFO @ Fri, 05 Jul 2019 09:22:12: 32000000 INFO @ Fri, 05 Jul 2019 09:22:13: 30000000 INFO @ Fri, 05 Jul 2019 09:22:13: 25000000 INFO @ Fri, 05 Jul 2019 09:22:20: 33000000 INFO @ Fri, 05 Jul 2019 09:22:21: 31000000 INFO @ Fri, 05 Jul 2019 09:22:23: 26000000 INFO @ Fri, 05 Jul 2019 09:22:27: 34000000 INFO @ Fri, 05 Jul 2019 09:22:29: 32000000 INFO @ Fri, 05 Jul 2019 09:22:32: 27000000 INFO @ Fri, 05 Jul 2019 09:22:35: 35000000 INFO @ Fri, 05 Jul 2019 09:22:37: 33000000 INFO @ Fri, 05 Jul 2019 09:22:41: 28000000 INFO @ Fri, 05 Jul 2019 09:22:42: 36000000 INFO @ Fri, 05 Jul 2019 09:22:45: 34000000 INFO @ Fri, 05 Jul 2019 09:22:50: 29000000 INFO @ Fri, 05 Jul 2019 09:22:50: 37000000 INFO @ Fri, 05 Jul 2019 09:22:53: 35000000 INFO @ Fri, 05 Jul 2019 09:22:58: 38000000 INFO @ Fri, 05 Jul 2019 09:22:59: 30000000 INFO @ Fri, 05 Jul 2019 09:23:01: 36000000 INFO @ Fri, 05 Jul 2019 09:23:05: 39000000 INFO @ Fri, 05 Jul 2019 09:23:08: 31000000 INFO @ Fri, 05 Jul 2019 09:23:09: 37000000 INFO @ Fri, 05 Jul 2019 09:23:13: 40000000 INFO @ Fri, 05 Jul 2019 09:23:17: 38000000 INFO @ Fri, 05 Jul 2019 09:23:17: 32000000 INFO @ Fri, 05 Jul 2019 09:23:21: 41000000 INFO @ Fri, 05 Jul 2019 09:23:25: 39000000 INFO @ Fri, 05 Jul 2019 09:23:27: 33000000 INFO @ Fri, 05 Jul 2019 09:23:28: 42000000 INFO @ Fri, 05 Jul 2019 09:23:33: 40000000 INFO @ Fri, 05 Jul 2019 09:23:36: 43000000 INFO @ Fri, 05 Jul 2019 09:23:36: 34000000 INFO @ Fri, 05 Jul 2019 09:23:41: 41000000 INFO @ Fri, 05 Jul 2019 09:23:43: 44000000 INFO @ Fri, 05 Jul 2019 09:23:46: 35000000 INFO @ Fri, 05 Jul 2019 09:23:49: 42000000 INFO @ Fri, 05 Jul 2019 09:23:51: 45000000 INFO @ Fri, 05 Jul 2019 09:23:56: 36000000 INFO @ Fri, 05 Jul 2019 09:23:57: 43000000 INFO @ Fri, 05 Jul 2019 09:23:59: 46000000 INFO @ Fri, 05 Jul 2019 09:24:05: 44000000 INFO @ Fri, 05 Jul 2019 09:24:06: 37000000 INFO @ Fri, 05 Jul 2019 09:24:06: 47000000 INFO @ Fri, 05 Jul 2019 09:24:13: 45000000 INFO @ Fri, 05 Jul 2019 09:24:14: 48000000 INFO @ Fri, 05 Jul 2019 09:24:15: 38000000 INFO @ Fri, 05 Jul 2019 09:24:21: 49000000 INFO @ Fri, 05 Jul 2019 09:24:21: 46000000 INFO @ Fri, 05 Jul 2019 09:24:25: 39000000 INFO @ Fri, 05 Jul 2019 09:24:29: 50000000 INFO @ Fri, 05 Jul 2019 09:24:30: 47000000 INFO @ Fri, 05 Jul 2019 09:24:34: 40000000 INFO @ Fri, 05 Jul 2019 09:24:37: 51000000 INFO @ Fri, 05 Jul 2019 09:24:38: 48000000 INFO @ Fri, 05 Jul 2019 09:24:43: 41000000 INFO @ Fri, 05 Jul 2019 09:24:45: 52000000 INFO @ Fri, 05 Jul 2019 09:24:46: 49000000 INFO @ Fri, 05 Jul 2019 09:24:52: 42000000 INFO @ Fri, 05 Jul 2019 09:24:53: 53000000 INFO @ Fri, 05 Jul 2019 09:24:54: 50000000 INFO @ Fri, 05 Jul 2019 09:25:00: 54000000 INFO @ Fri, 05 Jul 2019 09:25:01: 43000000 INFO @ Fri, 05 Jul 2019 09:25:02: 51000000 INFO @ Fri, 05 Jul 2019 09:25:08: 55000000 INFO @ Fri, 05 Jul 2019 09:25:11: 52000000 INFO @ Fri, 05 Jul 2019 09:25:11: 44000000 INFO @ Fri, 05 Jul 2019 09:25:15: 56000000 INFO @ Fri, 05 Jul 2019 09:25:19: 53000000 INFO @ Fri, 05 Jul 2019 09:25:21: 45000000 INFO @ Fri, 05 Jul 2019 09:25:23: 57000000 INFO @ Fri, 05 Jul 2019 09:25:27: 54000000 INFO @ Fri, 05 Jul 2019 09:25:30: 46000000 INFO @ Fri, 05 Jul 2019 09:25:30: 58000000 INFO @ Fri, 05 Jul 2019 09:25:36: 55000000 INFO @ Fri, 05 Jul 2019 09:25:38: 59000000 INFO @ Fri, 05 Jul 2019 09:25:40: 47000000 INFO @ Fri, 05 Jul 2019 09:25:44: 56000000 INFO @ Fri, 05 Jul 2019 09:25:46: 60000000 INFO @ Fri, 05 Jul 2019 09:25:49: 48000000 INFO @ Fri, 05 Jul 2019 09:25:53: 57000000 INFO @ Fri, 05 Jul 2019 09:25:53: 61000000 INFO @ Fri, 05 Jul 2019 09:25:59: 49000000 INFO @ Fri, 05 Jul 2019 09:26:01: 62000000 INFO @ Fri, 05 Jul 2019 09:26:01: 58000000 INFO @ Fri, 05 Jul 2019 09:26:08: 50000000 INFO @ Fri, 05 Jul 2019 09:26:08: 63000000 INFO @ Fri, 05 Jul 2019 09:26:09: 59000000 INFO @ Fri, 05 Jul 2019 09:26:16: 64000000 INFO @ Fri, 05 Jul 2019 09:26:17: 60000000 INFO @ Fri, 05 Jul 2019 09:26:19: 51000000 INFO @ Fri, 05 Jul 2019 09:26:24: 65000000 INFO @ Fri, 05 Jul 2019 09:26:25: 61000000 INFO @ Fri, 05 Jul 2019 09:26:29: 52000000 INFO @ Fri, 05 Jul 2019 09:26:31: 66000000 INFO @ Fri, 05 Jul 2019 09:26:33: 62000000 INFO @ Fri, 05 Jul 2019 09:26:39: 53000000 INFO @ Fri, 05 Jul 2019 09:26:39: 67000000 INFO @ Fri, 05 Jul 2019 09:26:41: 63000000 INFO @ Fri, 05 Jul 2019 09:26:47: 68000000 INFO @ Fri, 05 Jul 2019 09:26:49: 54000000 INFO @ Fri, 05 Jul 2019 09:26:49: 64000000 INFO @ Fri, 05 Jul 2019 09:26:55: 69000000 INFO @ Fri, 05 Jul 2019 09:26:57: 65000000 INFO @ Fri, 05 Jul 2019 09:26:59: 55000000 INFO @ Fri, 05 Jul 2019 09:27:02: 70000000 INFO @ Fri, 05 Jul 2019 09:27:05: 66000000 INFO @ Fri, 05 Jul 2019 09:27:09: 56000000 INFO @ Fri, 05 Jul 2019 09:27:10: 71000000 INFO @ Fri, 05 Jul 2019 09:27:13: 67000000 INFO @ Fri, 05 Jul 2019 09:27:18: 72000000 INFO @ Fri, 05 Jul 2019 09:27:18: 57000000 INFO @ Fri, 05 Jul 2019 09:27:21: 68000000 INFO @ Fri, 05 Jul 2019 09:27:25: 73000000 INFO @ Fri, 05 Jul 2019 09:27:28: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:27:28: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:27:28: #1 total tags in treatment: 73232157 INFO @ Fri, 05 Jul 2019 09:27:28: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:27:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:27:28: 58000000 INFO @ Fri, 05 Jul 2019 09:27:29: 69000000 INFO @ Fri, 05 Jul 2019 09:27:30: #1 tags after filtering in treatment: 73232028 INFO @ Fri, 05 Jul 2019 09:27:30: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:27:30: #1 finished! INFO @ Fri, 05 Jul 2019 09:27:30: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:27:30: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:27:37: 70000000 INFO @ Fri, 05 Jul 2019 09:27:38: 59000000 INFO @ Fri, 05 Jul 2019 09:27:43: #2 number of paired peaks: 107230 INFO @ Fri, 05 Jul 2019 09:27:43: start model_add_line... INFO @ Fri, 05 Jul 2019 09:27:44: start X-correlation... INFO @ Fri, 05 Jul 2019 09:27:44: end of X-cor INFO @ Fri, 05 Jul 2019 09:27:44: #2 finished! INFO @ Fri, 05 Jul 2019 09:27:44: #2 predicted fragment length is 128 bps INFO @ Fri, 05 Jul 2019 09:27:44: #2 alternative fragment length(s) may be 4,128 bps INFO @ Fri, 05 Jul 2019 09:27:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.05_model.r INFO @ Fri, 05 Jul 2019 09:27:44: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:27:44: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:27:45: 71000000 INFO @ Fri, 05 Jul 2019 09:27:47: 60000000 INFO @ Fri, 05 Jul 2019 09:27:53: 72000000 INFO @ Fri, 05 Jul 2019 09:27:57: 61000000 INFO @ Fri, 05 Jul 2019 09:28:01: 73000000 INFO @ Fri, 05 Jul 2019 09:28:04: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:28:04: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:28:04: #1 total tags in treatment: 73232157 INFO @ Fri, 05 Jul 2019 09:28:04: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:28:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:28:05: #1 tags after filtering in treatment: 73232028 INFO @ Fri, 05 Jul 2019 09:28:05: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:28:05: #1 finished! INFO @ Fri, 05 Jul 2019 09:28:05: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:28:05: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:28:06: 62000000 INFO @ Fri, 05 Jul 2019 09:28:15: 63000000 INFO @ Fri, 05 Jul 2019 09:28:19: #2 number of paired peaks: 107230 INFO @ Fri, 05 Jul 2019 09:28:19: start model_add_line... INFO @ Fri, 05 Jul 2019 09:28:20: start X-correlation... INFO @ Fri, 05 Jul 2019 09:28:20: end of X-cor INFO @ Fri, 05 Jul 2019 09:28:20: #2 finished! INFO @ Fri, 05 Jul 2019 09:28:20: #2 predicted fragment length is 128 bps INFO @ Fri, 05 Jul 2019 09:28:20: #2 alternative fragment length(s) may be 4,128 bps INFO @ Fri, 05 Jul 2019 09:28:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.10_model.r INFO @ Fri, 05 Jul 2019 09:28:20: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:28:20: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:28:24: 64000000 INFO @ Fri, 05 Jul 2019 09:28:33: 65000000 INFO @ Fri, 05 Jul 2019 09:28:43: 66000000 INFO @ Fri, 05 Jul 2019 09:28:52: 67000000 INFO @ Fri, 05 Jul 2019 09:29:01: 68000000 INFO @ Fri, 05 Jul 2019 09:29:10: 69000000 INFO @ Fri, 05 Jul 2019 09:29:19: 70000000 INFO @ Fri, 05 Jul 2019 09:29:28: 71000000 INFO @ Fri, 05 Jul 2019 09:29:38: 72000000 INFO @ Fri, 05 Jul 2019 09:29:47: 73000000 INFO @ Fri, 05 Jul 2019 09:29:50: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:29:50: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:29:50: #1 total tags in treatment: 73232157 INFO @ Fri, 05 Jul 2019 09:29:50: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:29:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:29:52: #1 tags after filtering in treatment: 73232028 INFO @ Fri, 05 Jul 2019 09:29:52: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:29:52: #1 finished! INFO @ Fri, 05 Jul 2019 09:29:52: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:29:52: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:30:05: #2 number of paired peaks: 107230 INFO @ Fri, 05 Jul 2019 09:30:05: start model_add_line... INFO @ Fri, 05 Jul 2019 09:30:07: start X-correlation... INFO @ Fri, 05 Jul 2019 09:30:07: end of X-cor INFO @ Fri, 05 Jul 2019 09:30:07: #2 finished! INFO @ Fri, 05 Jul 2019 09:30:07: #2 predicted fragment length is 128 bps INFO @ Fri, 05 Jul 2019 09:30:07: #2 alternative fragment length(s) may be 4,128 bps INFO @ Fri, 05 Jul 2019 09:30:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.20_model.r INFO @ Fri, 05 Jul 2019 09:30:07: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:30:07: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:31:34: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:32:10: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:33:32: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:33:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:33:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.05_summits.bed INFO @ Fri, 05 Jul 2019 09:33:33: Done! pass1 - making usageList (108 chroms): 4 millis pass2 - checking and writing primary data (19138 records, 4 fields): 29 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:33:52: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:34:08: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:34:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:34:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.10_summits.bed INFO @ Fri, 05 Jul 2019 09:34:08: Done! pass1 - making usageList (58 chroms): 3 millis pass2 - checking and writing primary data (2479 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:35:49: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:35:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:35:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101962/ERX101962.20_summits.bed INFO @ Fri, 05 Jul 2019 09:35:49: Done! pass1 - making usageList (31 chroms): 1 millis pass2 - checking and writing primary data (262 records, 4 fields): 5 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。