Job ID = 2001639 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T21:42:18 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:04:07 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:05:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:06:05 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:07:48 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:07:59 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:31 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:31 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:13:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 98,028,871 reads read : 98,028,871 reads written : 98,028,871 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:56:14 98028871 reads; of these: 98028871 (100.00%) were unpaired; of these: 3341527 (3.41%) aligned 0 times 68699034 (70.08%) aligned exactly 1 time 25988310 (26.51%) aligned >1 times 96.59% overall alignment rate Time searching: 00:56:15 Overall time: 00:56:15 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 8749622 / 94687344 = 0.0924 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 09:16:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:16:26: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:16:26: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:16:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:16:27: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:16:27: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:16:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:16:28: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:16:28: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:16:37: 1000000 INFO @ Fri, 05 Jul 2019 09:16:37: 1000000 INFO @ Fri, 05 Jul 2019 09:16:39: 1000000 INFO @ Fri, 05 Jul 2019 09:16:47: 2000000 INFO @ Fri, 05 Jul 2019 09:16:47: 2000000 INFO @ Fri, 05 Jul 2019 09:16:49: 2000000 INFO @ Fri, 05 Jul 2019 09:16:57: 3000000 INFO @ Fri, 05 Jul 2019 09:16:58: 3000000 INFO @ Fri, 05 Jul 2019 09:16:59: 3000000 INFO @ Fri, 05 Jul 2019 09:17:07: 4000000 INFO @ Fri, 05 Jul 2019 09:17:07: 4000000 INFO @ Fri, 05 Jul 2019 09:17:09: 4000000 INFO @ Fri, 05 Jul 2019 09:17:16: 5000000 INFO @ Fri, 05 Jul 2019 09:17:17: 5000000 INFO @ Fri, 05 Jul 2019 09:17:18: 5000000 INFO @ Fri, 05 Jul 2019 09:17:26: 6000000 INFO @ Fri, 05 Jul 2019 09:17:26: 6000000 INFO @ Fri, 05 Jul 2019 09:17:28: 6000000 INFO @ Fri, 05 Jul 2019 09:17:36: 7000000 INFO @ Fri, 05 Jul 2019 09:17:36: 7000000 INFO @ Fri, 05 Jul 2019 09:17:38: 7000000 INFO @ Fri, 05 Jul 2019 09:17:46: 8000000 INFO @ Fri, 05 Jul 2019 09:17:46: 8000000 INFO @ Fri, 05 Jul 2019 09:17:48: 8000000 INFO @ Fri, 05 Jul 2019 09:17:55: 9000000 INFO @ Fri, 05 Jul 2019 09:17:56: 9000000 INFO @ Fri, 05 Jul 2019 09:17:57: 9000000 INFO @ Fri, 05 Jul 2019 09:18:05: 10000000 INFO @ Fri, 05 Jul 2019 09:18:06: 10000000 INFO @ Fri, 05 Jul 2019 09:18:07: 10000000 INFO @ Fri, 05 Jul 2019 09:18:15: 11000000 INFO @ Fri, 05 Jul 2019 09:18:16: 11000000 INFO @ Fri, 05 Jul 2019 09:18:17: 11000000 INFO @ Fri, 05 Jul 2019 09:18:25: 12000000 INFO @ Fri, 05 Jul 2019 09:18:26: 12000000 INFO @ Fri, 05 Jul 2019 09:18:27: 12000000 INFO @ Fri, 05 Jul 2019 09:18:35: 13000000 INFO @ Fri, 05 Jul 2019 09:18:36: 13000000 INFO @ Fri, 05 Jul 2019 09:18:36: 13000000 INFO @ Fri, 05 Jul 2019 09:18:45: 14000000 INFO @ Fri, 05 Jul 2019 09:18:45: 14000000 INFO @ Fri, 05 Jul 2019 09:18:45: 14000000 INFO @ Fri, 05 Jul 2019 09:18:54: 15000000 INFO @ Fri, 05 Jul 2019 09:18:55: 15000000 INFO @ Fri, 05 Jul 2019 09:18:55: 15000000 INFO @ Fri, 05 Jul 2019 09:19:04: 16000000 INFO @ Fri, 05 Jul 2019 09:19:04: 16000000 INFO @ Fri, 05 Jul 2019 09:19:05: 16000000 INFO @ Fri, 05 Jul 2019 09:19:14: 17000000 INFO @ Fri, 05 Jul 2019 09:19:14: 17000000 INFO @ Fri, 05 Jul 2019 09:19:15: 17000000 INFO @ Fri, 05 Jul 2019 09:19:23: 18000000 INFO @ Fri, 05 Jul 2019 09:19:24: 18000000 INFO @ Fri, 05 Jul 2019 09:19:25: 18000000 INFO @ Fri, 05 Jul 2019 09:19:32: 19000000 INFO @ Fri, 05 Jul 2019 09:19:34: 19000000 INFO @ Fri, 05 Jul 2019 09:19:34: 19000000 INFO @ Fri, 05 Jul 2019 09:19:42: 20000000 INFO @ Fri, 05 Jul 2019 09:19:44: 20000000 INFO @ Fri, 05 Jul 2019 09:19:44: 20000000 INFO @ Fri, 05 Jul 2019 09:19:51: 21000000 INFO @ Fri, 05 Jul 2019 09:19:53: 21000000 INFO @ Fri, 05 Jul 2019 09:19:56: 21000000 INFO @ Fri, 05 Jul 2019 09:20:01: 22000000 INFO @ Fri, 05 Jul 2019 09:20:03: 22000000 INFO @ Fri, 05 Jul 2019 09:20:06: 22000000 INFO @ Fri, 05 Jul 2019 09:20:10: 23000000 INFO @ Fri, 05 Jul 2019 09:20:12: 23000000 INFO @ Fri, 05 Jul 2019 09:20:16: 23000000 INFO @ Fri, 05 Jul 2019 09:20:20: 24000000 INFO @ Fri, 05 Jul 2019 09:20:22: 24000000 INFO @ Fri, 05 Jul 2019 09:20:25: 24000000 INFO @ Fri, 05 Jul 2019 09:20:31: 25000000 INFO @ Fri, 05 Jul 2019 09:20:32: 25000000 INFO @ Fri, 05 Jul 2019 09:20:34: 25000000 INFO @ Fri, 05 Jul 2019 09:20:40: 26000000 INFO @ Fri, 05 Jul 2019 09:20:41: 26000000 INFO @ Fri, 05 Jul 2019 09:20:44: 26000000 INFO @ Fri, 05 Jul 2019 09:20:49: 27000000 INFO @ Fri, 05 Jul 2019 09:20:51: 27000000 INFO @ Fri, 05 Jul 2019 09:20:53: 27000000 INFO @ Fri, 05 Jul 2019 09:20:58: 28000000 INFO @ Fri, 05 Jul 2019 09:21:00: 28000000 INFO @ Fri, 05 Jul 2019 09:21:03: 28000000 INFO @ Fri, 05 Jul 2019 09:21:08: 29000000 INFO @ Fri, 05 Jul 2019 09:21:10: 29000000 INFO @ Fri, 05 Jul 2019 09:21:12: 29000000 INFO @ Fri, 05 Jul 2019 09:21:17: 30000000 INFO @ Fri, 05 Jul 2019 09:21:18: 30000000 INFO @ Fri, 05 Jul 2019 09:21:22: 30000000 INFO @ Fri, 05 Jul 2019 09:21:26: 31000000 INFO @ Fri, 05 Jul 2019 09:21:28: 31000000 INFO @ Fri, 05 Jul 2019 09:21:31: 31000000 INFO @ Fri, 05 Jul 2019 09:21:36: 32000000 INFO @ Fri, 05 Jul 2019 09:21:38: 32000000 INFO @ Fri, 05 Jul 2019 09:21:41: 32000000 INFO @ Fri, 05 Jul 2019 09:21:46: 33000000 INFO @ Fri, 05 Jul 2019 09:21:47: 33000000 INFO @ Fri, 05 Jul 2019 09:21:50: 33000000 INFO @ Fri, 05 Jul 2019 09:21:54: 34000000 INFO @ Fri, 05 Jul 2019 09:21:56: 34000000 INFO @ Fri, 05 Jul 2019 09:21:59: 34000000 INFO @ Fri, 05 Jul 2019 09:22:04: 35000000 INFO @ Fri, 05 Jul 2019 09:22:05: 35000000 INFO @ Fri, 05 Jul 2019 09:22:07: 35000000 INFO @ Fri, 05 Jul 2019 09:22:13: 36000000 INFO @ Fri, 05 Jul 2019 09:22:14: 36000000 INFO @ Fri, 05 Jul 2019 09:22:15: 36000000 INFO @ Fri, 05 Jul 2019 09:22:23: 37000000 INFO @ Fri, 05 Jul 2019 09:22:23: 37000000 INFO @ Fri, 05 Jul 2019 09:22:23: 37000000 INFO @ Fri, 05 Jul 2019 09:22:32: 38000000 INFO @ Fri, 05 Jul 2019 09:22:32: 38000000 INFO @ Fri, 05 Jul 2019 09:22:33: 38000000 INFO @ Fri, 05 Jul 2019 09:22:40: 39000000 INFO @ Fri, 05 Jul 2019 09:22:42: 39000000 INFO @ Fri, 05 Jul 2019 09:22:42: 39000000 INFO @ Fri, 05 Jul 2019 09:22:49: 40000000 INFO @ Fri, 05 Jul 2019 09:22:51: 40000000 INFO @ Fri, 05 Jul 2019 09:22:51: 40000000 INFO @ Fri, 05 Jul 2019 09:22:57: 41000000 INFO @ Fri, 05 Jul 2019 09:23:00: 41000000 INFO @ Fri, 05 Jul 2019 09:23:01: 41000000 INFO @ Fri, 05 Jul 2019 09:23:05: 42000000 INFO @ Fri, 05 Jul 2019 09:23:09: 42000000 INFO @ Fri, 05 Jul 2019 09:23:10: 42000000 INFO @ Fri, 05 Jul 2019 09:23:14: 43000000 INFO @ Fri, 05 Jul 2019 09:23:19: 43000000 INFO @ Fri, 05 Jul 2019 09:23:20: 43000000 INFO @ Fri, 05 Jul 2019 09:23:22: 44000000 INFO @ Fri, 05 Jul 2019 09:23:29: 44000000 INFO @ Fri, 05 Jul 2019 09:23:30: 45000000 INFO @ Fri, 05 Jul 2019 09:23:30: 44000000 INFO @ Fri, 05 Jul 2019 09:23:38: 46000000 INFO @ Fri, 05 Jul 2019 09:23:39: 45000000 INFO @ Fri, 05 Jul 2019 09:23:40: 45000000 INFO @ Fri, 05 Jul 2019 09:23:46: 47000000 INFO @ Fri, 05 Jul 2019 09:23:49: 46000000 INFO @ Fri, 05 Jul 2019 09:23:50: 46000000 INFO @ Fri, 05 Jul 2019 09:23:54: 48000000 INFO @ Fri, 05 Jul 2019 09:23:59: 47000000 INFO @ Fri, 05 Jul 2019 09:24:00: 47000000 INFO @ Fri, 05 Jul 2019 09:24:04: 49000000 INFO @ Fri, 05 Jul 2019 09:24:08: 48000000 INFO @ Fri, 05 Jul 2019 09:24:09: 48000000 INFO @ Fri, 05 Jul 2019 09:24:12: 50000000 INFO @ Fri, 05 Jul 2019 09:24:16: 49000000 INFO @ Fri, 05 Jul 2019 09:24:18: 49000000 INFO @ Fri, 05 Jul 2019 09:24:20: 51000000 INFO @ Fri, 05 Jul 2019 09:24:25: 50000000 INFO @ Fri, 05 Jul 2019 09:24:27: 50000000 INFO @ Fri, 05 Jul 2019 09:24:28: 52000000 INFO @ Fri, 05 Jul 2019 09:24:34: 51000000 INFO @ Fri, 05 Jul 2019 09:24:36: 51000000 INFO @ Fri, 05 Jul 2019 09:24:36: 53000000 INFO @ Fri, 05 Jul 2019 09:24:43: 52000000 INFO @ Fri, 05 Jul 2019 09:24:45: 54000000 INFO @ Fri, 05 Jul 2019 09:24:46: 52000000 INFO @ Fri, 05 Jul 2019 09:24:52: 53000000 INFO @ Fri, 05 Jul 2019 09:24:53: 55000000 INFO @ Fri, 05 Jul 2019 09:24:55: 53000000 INFO @ Fri, 05 Jul 2019 09:25:01: 56000000 INFO @ Fri, 05 Jul 2019 09:25:01: 54000000 INFO @ Fri, 05 Jul 2019 09:25:05: 54000000 INFO @ Fri, 05 Jul 2019 09:25:09: 57000000 INFO @ Fri, 05 Jul 2019 09:25:10: 55000000 INFO @ Fri, 05 Jul 2019 09:25:14: 55000000 INFO @ Fri, 05 Jul 2019 09:25:17: 58000000 INFO @ Fri, 05 Jul 2019 09:25:19: 56000000 INFO @ Fri, 05 Jul 2019 09:25:24: 56000000 INFO @ Fri, 05 Jul 2019 09:25:25: 59000000 INFO @ Fri, 05 Jul 2019 09:25:28: 57000000 INFO @ Fri, 05 Jul 2019 09:25:33: 57000000 INFO @ Fri, 05 Jul 2019 09:25:34: 60000000 INFO @ Fri, 05 Jul 2019 09:25:37: 58000000 INFO @ Fri, 05 Jul 2019 09:25:42: 61000000 INFO @ Fri, 05 Jul 2019 09:25:42: 58000000 INFO @ Fri, 05 Jul 2019 09:25:46: 59000000 INFO @ Fri, 05 Jul 2019 09:25:50: 62000000 INFO @ Fri, 05 Jul 2019 09:25:52: 59000000 INFO @ Fri, 05 Jul 2019 09:25:55: 60000000 INFO @ Fri, 05 Jul 2019 09:25:58: 63000000 INFO @ Fri, 05 Jul 2019 09:26:01: 60000000 INFO @ Fri, 05 Jul 2019 09:26:05: 61000000 INFO @ Fri, 05 Jul 2019 09:26:07: 64000000 INFO @ Fri, 05 Jul 2019 09:26:11: 61000000 INFO @ Fri, 05 Jul 2019 09:26:14: 62000000 INFO @ Fri, 05 Jul 2019 09:26:15: 65000000 INFO @ Fri, 05 Jul 2019 09:26:20: 62000000 INFO @ Fri, 05 Jul 2019 09:26:23: 63000000 INFO @ Fri, 05 Jul 2019 09:26:24: 66000000 INFO @ Fri, 05 Jul 2019 09:26:29: 63000000 INFO @ Fri, 05 Jul 2019 09:26:32: 64000000 INFO @ Fri, 05 Jul 2019 09:26:32: 67000000 INFO @ Fri, 05 Jul 2019 09:26:39: 64000000 INFO @ Fri, 05 Jul 2019 09:26:40: 68000000 INFO @ Fri, 05 Jul 2019 09:26:41: 65000000 INFO @ Fri, 05 Jul 2019 09:26:48: 65000000 INFO @ Fri, 05 Jul 2019 09:26:49: 69000000 INFO @ Fri, 05 Jul 2019 09:26:51: 66000000 INFO @ Fri, 05 Jul 2019 09:26:57: 70000000 INFO @ Fri, 05 Jul 2019 09:26:59: 66000000 INFO @ Fri, 05 Jul 2019 09:27:00: 67000000 INFO @ Fri, 05 Jul 2019 09:27:05: 71000000 INFO @ Fri, 05 Jul 2019 09:27:09: 67000000 INFO @ Fri, 05 Jul 2019 09:27:10: 68000000 INFO @ Fri, 05 Jul 2019 09:27:13: 72000000 INFO @ Fri, 05 Jul 2019 09:27:18: 68000000 INFO @ Fri, 05 Jul 2019 09:27:20: 69000000 INFO @ Fri, 05 Jul 2019 09:27:21: 73000000 INFO @ Fri, 05 Jul 2019 09:27:28: 69000000 INFO @ Fri, 05 Jul 2019 09:27:29: 74000000 INFO @ Fri, 05 Jul 2019 09:27:30: 70000000 INFO @ Fri, 05 Jul 2019 09:27:37: 75000000 INFO @ Fri, 05 Jul 2019 09:27:38: 70000000 INFO @ Fri, 05 Jul 2019 09:27:40: 71000000 INFO @ Fri, 05 Jul 2019 09:27:45: 76000000 INFO @ Fri, 05 Jul 2019 09:27:48: 71000000 INFO @ Fri, 05 Jul 2019 09:27:50: 72000000 INFO @ Fri, 05 Jul 2019 09:27:53: 77000000 INFO @ Fri, 05 Jul 2019 09:27:58: 72000000 INFO @ Fri, 05 Jul 2019 09:28:00: 73000000 INFO @ Fri, 05 Jul 2019 09:28:01: 78000000 INFO @ Fri, 05 Jul 2019 09:28:08: 73000000 INFO @ Fri, 05 Jul 2019 09:28:09: 79000000 INFO @ Fri, 05 Jul 2019 09:28:10: 74000000 INFO @ Fri, 05 Jul 2019 09:28:17: 80000000 INFO @ Fri, 05 Jul 2019 09:28:18: 74000000 INFO @ Fri, 05 Jul 2019 09:28:19: 75000000 INFO @ Fri, 05 Jul 2019 09:28:25: 81000000 INFO @ Fri, 05 Jul 2019 09:28:28: 75000000 INFO @ Fri, 05 Jul 2019 09:28:29: 76000000 INFO @ Fri, 05 Jul 2019 09:28:33: 82000000 INFO @ Fri, 05 Jul 2019 09:28:38: 76000000 INFO @ Fri, 05 Jul 2019 09:28:40: 77000000 INFO @ Fri, 05 Jul 2019 09:28:42: 83000000 INFO @ Fri, 05 Jul 2019 09:28:48: 77000000 INFO @ Fri, 05 Jul 2019 09:28:50: 84000000 INFO @ Fri, 05 Jul 2019 09:28:50: 78000000 INFO @ Fri, 05 Jul 2019 09:28:58: 85000000 INFO @ Fri, 05 Jul 2019 09:28:58: 78000000 INFO @ Fri, 05 Jul 2019 09:28:59: 79000000 INFO @ Fri, 05 Jul 2019 09:29:06: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 09:29:06: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 09:29:06: #1 total tags in treatment: 85937722 INFO @ Fri, 05 Jul 2019 09:29:06: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:29:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:29:07: 79000000 INFO @ Fri, 05 Jul 2019 09:29:08: #1 tags after filtering in treatment: 85937668 INFO @ Fri, 05 Jul 2019 09:29:08: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:29:08: #1 finished! INFO @ Fri, 05 Jul 2019 09:29:08: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:29:08: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:29:08: 80000000 INFO @ Fri, 05 Jul 2019 09:29:17: 80000000 INFO @ Fri, 05 Jul 2019 09:29:17: #2 number of paired peaks: 11275 INFO @ Fri, 05 Jul 2019 09:29:17: start model_add_line... INFO @ Fri, 05 Jul 2019 09:29:18: 81000000 INFO @ Fri, 05 Jul 2019 09:29:18: start X-correlation... INFO @ Fri, 05 Jul 2019 09:29:18: end of X-cor INFO @ Fri, 05 Jul 2019 09:29:18: #2 finished! INFO @ Fri, 05 Jul 2019 09:29:18: #2 predicted fragment length is 112 bps INFO @ Fri, 05 Jul 2019 09:29:18: #2 alternative fragment length(s) may be 3,112 bps INFO @ Fri, 05 Jul 2019 09:29:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.05_model.r INFO @ Fri, 05 Jul 2019 09:29:18: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:29:18: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:29:26: 81000000 INFO @ Fri, 05 Jul 2019 09:29:27: 82000000 INFO @ Fri, 05 Jul 2019 09:29:36: 82000000 INFO @ Fri, 05 Jul 2019 09:29:36: 83000000 INFO @ Fri, 05 Jul 2019 09:29:45: 83000000 INFO @ Fri, 05 Jul 2019 09:29:46: 84000000 INFO @ Fri, 05 Jul 2019 09:29:55: 84000000 INFO @ Fri, 05 Jul 2019 09:29:55: 85000000 INFO @ Fri, 05 Jul 2019 09:30:04: 85000000 INFO @ Fri, 05 Jul 2019 09:30:05: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 09:30:05: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 09:30:05: #1 total tags in treatment: 85937722 INFO @ Fri, 05 Jul 2019 09:30:05: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:30:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:30:07: #1 tags after filtering in treatment: 85937668 INFO @ Fri, 05 Jul 2019 09:30:07: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:30:07: #1 finished! INFO @ Fri, 05 Jul 2019 09:30:07: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:30:07: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:30:14: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 09:30:14: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 09:30:14: #1 total tags in treatment: 85937722 INFO @ Fri, 05 Jul 2019 09:30:14: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:30:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:30:16: #1 tags after filtering in treatment: 85937668 INFO @ Fri, 05 Jul 2019 09:30:16: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:30:16: #1 finished! INFO @ Fri, 05 Jul 2019 09:30:16: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:30:16: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:30:16: #2 number of paired peaks: 11275 INFO @ Fri, 05 Jul 2019 09:30:16: start model_add_line... INFO @ Fri, 05 Jul 2019 09:30:17: start X-correlation... INFO @ Fri, 05 Jul 2019 09:30:17: end of X-cor INFO @ Fri, 05 Jul 2019 09:30:17: #2 finished! INFO @ Fri, 05 Jul 2019 09:30:17: #2 predicted fragment length is 112 bps INFO @ Fri, 05 Jul 2019 09:30:17: #2 alternative fragment length(s) may be 3,112 bps INFO @ Fri, 05 Jul 2019 09:30:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.10_model.r INFO @ Fri, 05 Jul 2019 09:30:17: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:30:17: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:30:25: #2 number of paired peaks: 11275 INFO @ Fri, 05 Jul 2019 09:30:25: start model_add_line... INFO @ Fri, 05 Jul 2019 09:30:26: start X-correlation... INFO @ Fri, 05 Jul 2019 09:30:26: end of X-cor INFO @ Fri, 05 Jul 2019 09:30:26: #2 finished! INFO @ Fri, 05 Jul 2019 09:30:26: #2 predicted fragment length is 112 bps INFO @ Fri, 05 Jul 2019 09:30:26: #2 alternative fragment length(s) may be 3,112 bps INFO @ Fri, 05 Jul 2019 09:30:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.20_model.r INFO @ Fri, 05 Jul 2019 09:30:26: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:30:26: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:33:52: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:34:48: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:34:56: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:36:06: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:36:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:36:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.05_summits.bed INFO @ Fri, 05 Jul 2019 09:36:06: Done! pass1 - making usageList (105 chroms): 3 millis pass2 - checking and writing primary data (5606 records, 4 fields): 389 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:37:07: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:37:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:37:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.10_summits.bed INFO @ Fri, 05 Jul 2019 09:37:07: Done! pass1 - making usageList (64 chroms): 2 millis pass2 - checking and writing primary data (1707 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:37:11: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:37:12: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:37:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101954/ERX101954.20_summits.bed INFO @ Fri, 05 Jul 2019 09:37:12: Done! pass1 - making usageList (44 chroms): 2 millis pass2 - checking and writing primary data (497 records, 4 fields): 60 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。