Job ID = 2001635 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T21:57:59 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T21:59:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T21:59:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:07:39 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:11:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:31 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:36 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:13:23 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:13:41 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:13:41 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:14 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:56 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 85,866,672 reads read : 85,866,672 reads written : 85,866,672 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:42:08 85866672 reads; of these: 85866672 (100.00%) were unpaired; of these: 6544201 (7.62%) aligned 0 times 57741685 (67.25%) aligned exactly 1 time 21580786 (25.13%) aligned >1 times 92.38% overall alignment rate Time searching: 00:42:10 Overall time: 00:42:10 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 6307606 / 79322471 = 0.0795 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 08:57:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:57:02: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:57:02: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:57:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:57:02: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:57:02: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:57:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:57:02: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:57:02: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:57:11: 1000000 INFO @ Fri, 05 Jul 2019 08:57:12: 1000000 INFO @ Fri, 05 Jul 2019 08:57:12: 1000000 INFO @ Fri, 05 Jul 2019 08:57:20: 2000000 INFO @ Fri, 05 Jul 2019 08:57:22: 2000000 INFO @ Fri, 05 Jul 2019 08:57:22: 2000000 INFO @ Fri, 05 Jul 2019 08:57:29: 3000000 INFO @ Fri, 05 Jul 2019 08:57:32: 3000000 INFO @ Fri, 05 Jul 2019 08:57:32: 3000000 INFO @ Fri, 05 Jul 2019 08:57:37: 4000000 INFO @ Fri, 05 Jul 2019 08:57:42: 4000000 INFO @ Fri, 05 Jul 2019 08:57:42: 4000000 INFO @ Fri, 05 Jul 2019 08:57:46: 5000000 INFO @ Fri, 05 Jul 2019 08:57:52: 5000000 INFO @ Fri, 05 Jul 2019 08:57:52: 5000000 INFO @ Fri, 05 Jul 2019 08:57:55: 6000000 INFO @ Fri, 05 Jul 2019 08:58:02: 6000000 INFO @ Fri, 05 Jul 2019 08:58:02: 6000000 INFO @ Fri, 05 Jul 2019 08:58:04: 7000000 INFO @ Fri, 05 Jul 2019 08:58:12: 7000000 INFO @ Fri, 05 Jul 2019 08:58:12: 7000000 INFO @ Fri, 05 Jul 2019 08:58:13: 8000000 INFO @ Fri, 05 Jul 2019 08:58:22: 8000000 INFO @ Fri, 05 Jul 2019 08:58:22: 9000000 INFO @ Fri, 05 Jul 2019 08:58:22: 8000000 INFO @ Fri, 05 Jul 2019 08:58:31: 10000000 INFO @ Fri, 05 Jul 2019 08:58:32: 9000000 INFO @ Fri, 05 Jul 2019 08:58:32: 9000000 INFO @ Fri, 05 Jul 2019 08:58:40: 11000000 INFO @ Fri, 05 Jul 2019 08:58:42: 10000000 INFO @ Fri, 05 Jul 2019 08:58:42: 10000000 INFO @ Fri, 05 Jul 2019 08:58:48: 12000000 INFO @ Fri, 05 Jul 2019 08:58:52: 11000000 INFO @ Fri, 05 Jul 2019 08:58:52: 11000000 INFO @ Fri, 05 Jul 2019 08:58:57: 13000000 INFO @ Fri, 05 Jul 2019 08:59:02: 12000000 INFO @ Fri, 05 Jul 2019 08:59:02: 12000000 INFO @ Fri, 05 Jul 2019 08:59:05: 14000000 INFO @ Fri, 05 Jul 2019 08:59:12: 13000000 INFO @ Fri, 05 Jul 2019 08:59:12: 13000000 INFO @ Fri, 05 Jul 2019 08:59:13: 15000000 INFO @ Fri, 05 Jul 2019 08:59:21: 16000000 INFO @ Fri, 05 Jul 2019 08:59:22: 14000000 INFO @ Fri, 05 Jul 2019 08:59:22: 14000000 INFO @ Fri, 05 Jul 2019 08:59:29: 17000000 INFO @ Fri, 05 Jul 2019 08:59:31: 15000000 INFO @ Fri, 05 Jul 2019 08:59:32: 15000000 INFO @ Fri, 05 Jul 2019 08:59:37: 18000000 INFO @ Fri, 05 Jul 2019 08:59:39: 16000000 INFO @ Fri, 05 Jul 2019 08:59:42: 16000000 INFO @ Fri, 05 Jul 2019 08:59:45: 19000000 INFO @ Fri, 05 Jul 2019 08:59:48: 17000000 INFO @ Fri, 05 Jul 2019 08:59:52: 17000000 INFO @ Fri, 05 Jul 2019 08:59:54: 20000000 INFO @ Fri, 05 Jul 2019 08:59:56: 18000000 INFO @ Fri, 05 Jul 2019 09:00:02: 18000000 INFO @ Fri, 05 Jul 2019 09:00:03: 21000000 INFO @ Fri, 05 Jul 2019 09:00:05: 19000000 INFO @ Fri, 05 Jul 2019 09:00:12: 19000000 INFO @ Fri, 05 Jul 2019 09:00:12: 22000000 INFO @ Fri, 05 Jul 2019 09:00:14: 20000000 INFO @ Fri, 05 Jul 2019 09:00:21: 23000000 INFO @ Fri, 05 Jul 2019 09:00:22: 20000000 INFO @ Fri, 05 Jul 2019 09:00:22: 21000000 INFO @ Fri, 05 Jul 2019 09:00:29: 24000000 INFO @ Fri, 05 Jul 2019 09:00:31: 22000000 INFO @ Fri, 05 Jul 2019 09:00:32: 21000000 INFO @ Fri, 05 Jul 2019 09:00:38: 25000000 INFO @ Fri, 05 Jul 2019 09:00:40: 23000000 INFO @ Fri, 05 Jul 2019 09:00:41: 22000000 INFO @ Fri, 05 Jul 2019 09:00:47: 26000000 INFO @ Fri, 05 Jul 2019 09:00:48: 24000000 INFO @ Fri, 05 Jul 2019 09:00:51: 23000000 INFO @ Fri, 05 Jul 2019 09:00:56: 27000000 INFO @ Fri, 05 Jul 2019 09:00:57: 25000000 INFO @ Fri, 05 Jul 2019 09:01:01: 24000000 INFO @ Fri, 05 Jul 2019 09:01:04: 28000000 INFO @ Fri, 05 Jul 2019 09:01:06: 26000000 INFO @ Fri, 05 Jul 2019 09:01:11: 25000000 INFO @ Fri, 05 Jul 2019 09:01:13: 29000000 INFO @ Fri, 05 Jul 2019 09:01:14: 27000000 INFO @ Fri, 05 Jul 2019 09:01:21: 26000000 INFO @ Fri, 05 Jul 2019 09:01:22: 30000000 INFO @ Fri, 05 Jul 2019 09:01:23: 28000000 INFO @ Fri, 05 Jul 2019 09:01:30: 31000000 INFO @ Fri, 05 Jul 2019 09:01:31: 27000000 INFO @ Fri, 05 Jul 2019 09:01:32: 29000000 INFO @ Fri, 05 Jul 2019 09:01:38: 32000000 INFO @ Fri, 05 Jul 2019 09:01:40: 30000000 INFO @ Fri, 05 Jul 2019 09:01:41: 28000000 INFO @ Fri, 05 Jul 2019 09:01:46: 33000000 INFO @ Fri, 05 Jul 2019 09:01:48: 31000000 INFO @ Fri, 05 Jul 2019 09:01:50: 29000000 INFO @ Fri, 05 Jul 2019 09:01:54: 34000000 INFO @ Fri, 05 Jul 2019 09:01:56: 32000000 INFO @ Fri, 05 Jul 2019 09:02:00: 30000000 INFO @ Fri, 05 Jul 2019 09:02:02: 35000000 INFO @ Fri, 05 Jul 2019 09:02:05: 33000000 INFO @ Fri, 05 Jul 2019 09:02:09: 31000000 INFO @ Fri, 05 Jul 2019 09:02:10: 36000000 INFO @ Fri, 05 Jul 2019 09:02:13: 34000000 INFO @ Fri, 05 Jul 2019 09:02:18: 32000000 INFO @ Fri, 05 Jul 2019 09:02:18: 37000000 INFO @ Fri, 05 Jul 2019 09:02:22: 35000000 INFO @ Fri, 05 Jul 2019 09:02:26: 38000000 INFO @ Fri, 05 Jul 2019 09:02:28: 33000000 INFO @ Fri, 05 Jul 2019 09:02:30: 36000000 INFO @ Fri, 05 Jul 2019 09:02:34: 39000000 INFO @ Fri, 05 Jul 2019 09:02:38: 34000000 INFO @ Fri, 05 Jul 2019 09:02:38: 37000000 INFO @ Fri, 05 Jul 2019 09:02:43: 40000000 INFO @ Fri, 05 Jul 2019 09:02:47: 38000000 INFO @ Fri, 05 Jul 2019 09:02:47: 35000000 INFO @ Fri, 05 Jul 2019 09:02:51: 41000000 INFO @ Fri, 05 Jul 2019 09:02:55: 39000000 INFO @ Fri, 05 Jul 2019 09:02:57: 36000000 INFO @ Fri, 05 Jul 2019 09:03:00: 42000000 INFO @ Fri, 05 Jul 2019 09:03:03: 40000000 INFO @ Fri, 05 Jul 2019 09:03:06: 37000000 INFO @ Fri, 05 Jul 2019 09:03:08: 43000000 INFO @ Fri, 05 Jul 2019 09:03:11: 41000000 INFO @ Fri, 05 Jul 2019 09:03:16: 38000000 INFO @ Fri, 05 Jul 2019 09:03:17: 44000000 INFO @ Fri, 05 Jul 2019 09:03:19: 42000000 INFO @ Fri, 05 Jul 2019 09:03:25: 45000000 INFO @ Fri, 05 Jul 2019 09:03:25: 39000000 INFO @ Fri, 05 Jul 2019 09:03:28: 43000000 INFO @ Fri, 05 Jul 2019 09:03:33: 46000000 INFO @ Fri, 05 Jul 2019 09:03:34: 40000000 INFO @ Fri, 05 Jul 2019 09:03:36: 44000000 INFO @ Fri, 05 Jul 2019 09:03:42: 47000000 INFO @ Fri, 05 Jul 2019 09:03:44: 45000000 INFO @ Fri, 05 Jul 2019 09:03:44: 41000000 INFO @ Fri, 05 Jul 2019 09:03:50: 48000000 INFO @ Fri, 05 Jul 2019 09:03:52: 46000000 INFO @ Fri, 05 Jul 2019 09:03:54: 42000000 INFO @ Fri, 05 Jul 2019 09:03:58: 49000000 INFO @ Fri, 05 Jul 2019 09:04:00: 47000000 INFO @ Fri, 05 Jul 2019 09:04:03: 43000000 INFO @ Fri, 05 Jul 2019 09:04:07: 50000000 INFO @ Fri, 05 Jul 2019 09:04:08: 48000000 INFO @ Fri, 05 Jul 2019 09:04:13: 44000000 INFO @ Fri, 05 Jul 2019 09:04:16: 51000000 INFO @ Fri, 05 Jul 2019 09:04:16: 49000000 INFO @ Fri, 05 Jul 2019 09:04:22: 45000000 INFO @ Fri, 05 Jul 2019 09:04:24: 50000000 INFO @ Fri, 05 Jul 2019 09:04:24: 52000000 INFO @ Fri, 05 Jul 2019 09:04:31: 46000000 INFO @ Fri, 05 Jul 2019 09:04:32: 51000000 INFO @ Fri, 05 Jul 2019 09:04:33: 53000000 INFO @ Fri, 05 Jul 2019 09:04:41: 47000000 INFO @ Fri, 05 Jul 2019 09:04:41: 52000000 INFO @ Fri, 05 Jul 2019 09:04:41: 54000000 INFO @ Fri, 05 Jul 2019 09:04:49: 53000000 INFO @ Fri, 05 Jul 2019 09:04:50: 55000000 INFO @ Fri, 05 Jul 2019 09:04:50: 48000000 INFO @ Fri, 05 Jul 2019 09:04:57: 54000000 INFO @ Fri, 05 Jul 2019 09:04:58: 56000000 INFO @ Fri, 05 Jul 2019 09:04:59: 49000000 INFO @ Fri, 05 Jul 2019 09:05:05: 55000000 INFO @ Fri, 05 Jul 2019 09:05:06: 57000000 INFO @ Fri, 05 Jul 2019 09:05:09: 50000000 INFO @ Fri, 05 Jul 2019 09:05:14: 56000000 INFO @ Fri, 05 Jul 2019 09:05:15: 58000000 INFO @ Fri, 05 Jul 2019 09:05:19: 51000000 INFO @ Fri, 05 Jul 2019 09:05:22: 57000000 INFO @ Fri, 05 Jul 2019 09:05:23: 59000000 INFO @ Fri, 05 Jul 2019 09:05:28: 52000000 INFO @ Fri, 05 Jul 2019 09:05:30: 58000000 INFO @ Fri, 05 Jul 2019 09:05:32: 60000000 INFO @ Fri, 05 Jul 2019 09:05:38: 53000000 INFO @ Fri, 05 Jul 2019 09:05:38: 59000000 INFO @ Fri, 05 Jul 2019 09:05:40: 61000000 INFO @ Fri, 05 Jul 2019 09:05:47: 60000000 INFO @ Fri, 05 Jul 2019 09:05:47: 54000000 INFO @ Fri, 05 Jul 2019 09:05:48: 62000000 INFO @ Fri, 05 Jul 2019 09:05:55: 61000000 INFO @ Fri, 05 Jul 2019 09:05:56: 55000000 INFO @ Fri, 05 Jul 2019 09:05:57: 63000000 INFO @ Fri, 05 Jul 2019 09:06:03: 62000000 INFO @ Fri, 05 Jul 2019 09:06:05: 64000000 INFO @ Fri, 05 Jul 2019 09:06:05: 56000000 INFO @ Fri, 05 Jul 2019 09:06:11: 63000000 INFO @ Fri, 05 Jul 2019 09:06:14: 65000000 INFO @ Fri, 05 Jul 2019 09:06:15: 57000000 INFO @ Fri, 05 Jul 2019 09:06:19: 64000000 INFO @ Fri, 05 Jul 2019 09:06:22: 66000000 INFO @ Fri, 05 Jul 2019 09:06:24: 58000000 INFO @ Fri, 05 Jul 2019 09:06:27: 65000000 INFO @ Fri, 05 Jul 2019 09:06:31: 67000000 INFO @ Fri, 05 Jul 2019 09:06:33: 59000000 INFO @ Fri, 05 Jul 2019 09:06:35: 66000000 INFO @ Fri, 05 Jul 2019 09:06:39: 68000000 INFO @ Fri, 05 Jul 2019 09:06:42: 60000000 INFO @ Fri, 05 Jul 2019 09:06:43: 67000000 INFO @ Fri, 05 Jul 2019 09:06:47: 69000000 INFO @ Fri, 05 Jul 2019 09:06:51: 68000000 INFO @ Fri, 05 Jul 2019 09:06:51: 61000000 INFO @ Fri, 05 Jul 2019 09:06:56: 70000000 INFO @ Fri, 05 Jul 2019 09:06:59: 69000000 INFO @ Fri, 05 Jul 2019 09:07:00: 62000000 INFO @ Fri, 05 Jul 2019 09:07:04: 71000000 INFO @ Fri, 05 Jul 2019 09:07:07: 70000000 INFO @ Fri, 05 Jul 2019 09:07:09: 63000000 INFO @ Fri, 05 Jul 2019 09:07:13: 72000000 INFO @ Fri, 05 Jul 2019 09:07:15: 71000000 INFO @ Fri, 05 Jul 2019 09:07:19: 64000000 INFO @ Fri, 05 Jul 2019 09:07:21: 73000000 INFO @ Fri, 05 Jul 2019 09:07:22: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:07:22: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:07:22: #1 total tags in treatment: 73014865 INFO @ Fri, 05 Jul 2019 09:07:22: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:07:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:07:23: 72000000 INFO @ Fri, 05 Jul 2019 09:07:24: #1 tags after filtering in treatment: 73014808 INFO @ Fri, 05 Jul 2019 09:07:24: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:07:24: #1 finished! INFO @ Fri, 05 Jul 2019 09:07:24: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:07:24: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:07:28: 65000000 INFO @ Fri, 05 Jul 2019 09:07:31: 73000000 INFO @ Fri, 05 Jul 2019 09:07:31: #2 number of paired peaks: 7392 INFO @ Fri, 05 Jul 2019 09:07:31: start model_add_line... INFO @ Fri, 05 Jul 2019 09:07:32: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:07:32: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:07:32: #1 total tags in treatment: 73014865 INFO @ Fri, 05 Jul 2019 09:07:32: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:07:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:07:32: start X-correlation... INFO @ Fri, 05 Jul 2019 09:07:32: end of X-cor INFO @ Fri, 05 Jul 2019 09:07:32: #2 finished! INFO @ Fri, 05 Jul 2019 09:07:32: #2 predicted fragment length is 104 bps INFO @ Fri, 05 Jul 2019 09:07:32: #2 alternative fragment length(s) may be 4,104 bps INFO @ Fri, 05 Jul 2019 09:07:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.20_model.r INFO @ Fri, 05 Jul 2019 09:07:32: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:07:32: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:07:34: #1 tags after filtering in treatment: 73014808 INFO @ Fri, 05 Jul 2019 09:07:34: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:07:34: #1 finished! INFO @ Fri, 05 Jul 2019 09:07:34: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:07:34: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:07:37: 66000000 INFO @ Fri, 05 Jul 2019 09:07:41: #2 number of paired peaks: 7392 INFO @ Fri, 05 Jul 2019 09:07:41: start model_add_line... INFO @ Fri, 05 Jul 2019 09:07:42: start X-correlation... INFO @ Fri, 05 Jul 2019 09:07:42: end of X-cor INFO @ Fri, 05 Jul 2019 09:07:42: #2 finished! INFO @ Fri, 05 Jul 2019 09:07:42: #2 predicted fragment length is 104 bps INFO @ Fri, 05 Jul 2019 09:07:42: #2 alternative fragment length(s) may be 4,104 bps INFO @ Fri, 05 Jul 2019 09:07:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.10_model.r INFO @ Fri, 05 Jul 2019 09:07:42: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:07:42: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:07:46: 67000000 INFO @ Fri, 05 Jul 2019 09:07:55: 68000000 INFO @ Fri, 05 Jul 2019 09:08:04: 69000000 INFO @ Fri, 05 Jul 2019 09:08:13: 70000000 INFO @ Fri, 05 Jul 2019 09:08:23: 71000000 INFO @ Fri, 05 Jul 2019 09:08:32: 72000000 INFO @ Fri, 05 Jul 2019 09:08:41: 73000000 INFO @ Fri, 05 Jul 2019 09:08:42: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:08:42: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:08:42: #1 total tags in treatment: 73014865 INFO @ Fri, 05 Jul 2019 09:08:42: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:08:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:08:44: #1 tags after filtering in treatment: 73014808 INFO @ Fri, 05 Jul 2019 09:08:44: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:08:44: #1 finished! INFO @ Fri, 05 Jul 2019 09:08:44: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:08:44: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:08:51: #2 number of paired peaks: 7392 INFO @ Fri, 05 Jul 2019 09:08:51: start model_add_line... INFO @ Fri, 05 Jul 2019 09:08:52: start X-correlation... INFO @ Fri, 05 Jul 2019 09:08:52: end of X-cor INFO @ Fri, 05 Jul 2019 09:08:52: #2 finished! INFO @ Fri, 05 Jul 2019 09:08:52: #2 predicted fragment length is 104 bps INFO @ Fri, 05 Jul 2019 09:08:52: #2 alternative fragment length(s) may be 4,104 bps INFO @ Fri, 05 Jul 2019 09:08:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.05_model.r INFO @ Fri, 05 Jul 2019 09:08:52: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:08:52: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:11:23: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:11:34: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:12:46: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:13:29: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:13:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:13:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.20_summits.bed INFO @ Fri, 05 Jul 2019 09:13:37: Done! pass1 - making usageList (37 chroms): 1 millis pass2 - checking and writing primary data (373 records, 4 fields): 4 millis INFO @ Fri, 05 Jul 2019 09:13:41: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:13:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:13:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.10_summits.bed INFO @ Fri, 05 Jul 2019 09:13:41: Done! pass1 - making usageList (57 chroms): 2 millis pass2 - checking and writing primary data (1412 records, 4 fields): 10 millis CompletedMACS2peakCalling CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:14:53: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:14:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:14:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101951/ERX101951.05_summits.bed INFO @ Fri, 05 Jul 2019 09:14:53: Done! pass1 - making usageList (91 chroms): 3 millis pass2 - checking and writing primary data (4920 records, 4 fields): 21 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。