Job ID = 2001626 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T21:27:35 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:35 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005101.2' 2019-07-04T21:27:40 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:40 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005101.2' 2019-07-04T21:27:45 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:45 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005113.2' 2019-07-04T21:27:45 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:45 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005101.2' 2019-07-04T21:27:48 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:48 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005109.2' 2019-07-04T21:27:49 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:49 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005113.2' 2019-07-04T21:27:49 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:49 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005101.2' 2019-07-04T21:27:49 fasterq-dump.2.9.6 err: cmn_iter.c cmn_read_String( #67242726 ).VCursorCellDataDirect() -> RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcBusy) 2019-07-04T21:27:49 fasterq-dump.2.9.6 err: sorter.c write_to_store().pack_read_2_4na() failed RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:27:53 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:53 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005109.2' 2019-07-04T21:27:53 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:53 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005104.2' 2019-07-04T21:27:54 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:54 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005113.2' 2019-07-04T21:27:58 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:58 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005109.2' 2019-07-04T21:27:58 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:58 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005104.2' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005113.2' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: connection busy while validating within network system module - Failed to KHttpFileRead('https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125768' (), 32768) from '172.19.7.11' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: connection busy while validating within network system module - Failed to KHttpFileRead('https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125768' (), 32768) from '172.19.7.11' 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: cmn_iter.c cmn_read_String( #28868609 ).VCursorCellDataDirect() -> RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcBusy) 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: sorter.c write_to_store().pack_read_2_4na() failed RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005105.2' 2019-07-04T21:28:02 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:02 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005109.2' 2019-07-04T21:28:03 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:03 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005104.2' 2019-07-04T21:28:03 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:03 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005105.2' 2019-07-04T21:28:07 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:07 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005109.2' 2019-07-04T21:28:07 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:07 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:07 fasterq-dump.2.9.6 err: connection busy while validating within network system module - Failed to KHttpFileRead('https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125768' (), 32768) from '172.19.7.11' 2019-07-04T21:28:07 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:07 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:07 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:07 fasterq-dump.2.9.6 err: connection busy while validating within network system module - Failed to KHttpFileRead('https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125768' (), 32768) from '172.19.7.11' 2019-07-04T21:28:07 fasterq-dump.2.9.6 err: cmn_iter.c cmn_read_String( #20639745 ).VCursorCellDataDirect() -> RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcBusy) 2019-07-04T21:28:07 fasterq-dump.2.9.6 err: sorter.c write_to_store().pack_read_2_4na() failed RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:08 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:08 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005104.2' 2019-07-04T21:28:08 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:08 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005105.2' 2019-07-04T21:28:12 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:12 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005104.2' 2019-07-04T21:28:12 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:12 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:12 fasterq-dump.2.9.6 err: connection busy while validating within network system module - Failed to KHttpFileRead('https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125768' (), 32768) from '172.19.7.11' 2019-07-04T21:28:12 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:12 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:12 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:12 fasterq-dump.2.9.6 err: connection busy while validating within network system module - Failed to KHttpFileRead('https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125768' (), 32768) from '172.19.7.11' 2019-07-04T21:28:12 fasterq-dump.2.9.6 err: cmn_iter.c cmn_read_String( #54763521 ).VCursorCellDataDirect() -> RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcBusy) 2019-07-04T21:28:12 fasterq-dump.2.9.6 err: sorter.c write_to_store().pack_read_2_4na() failed RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:13 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:13 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005105.2' 2019-07-04T21:28:17 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:17 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005105.2' 2019-07-04T21:28:17 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:17 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:17 fasterq-dump.2.9.6 err: connection busy while validating within network system module - Failed to KHttpFileRead('https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125768' (), 32768) from '172.19.7.11' 2019-07-04T21:28:17 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:17 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:17 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:17 fasterq-dump.2.9.6 err: connection busy while validating within network system module - Failed to KHttpFileRead('https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125768' (), 32768) from '172.19.7.11' 2019-07-04T21:28:17 fasterq-dump.2.9.6 err: cmn_iter.c cmn_read_String( #44650497 ).VCursorCellDataDirect() -> RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcBusy) 2019-07-04T21:28:17 fasterq-dump.2.9.6 err: sorter.c write_to_store().pack_read_2_4na() failed RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:18 fasterq-dump.2.9.6 err: sorter.c run_producer_pool().join_and_release_threads -> RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:18 fasterq-dump.2.9.6 err: sorter.c execute_lookup_production() -> RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:18 fasterq-dump.2.9.6 err: fasterq-dump.c produce_lookup_files() -> RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:23 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:23 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125768' 2019-07-04T21:28:23 fasterq-dump.2.9.6 err: invalid accession 'ERR125768' 2019-07-04T21:50:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T21:55:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 93,587,836 reads read : 93,587,836 reads written : 93,587,836 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:16:48 93587836 reads; of these: 93587836 (100.00%) were unpaired; of these: 1536599 (1.64%) aligned 0 times 77616528 (82.93%) aligned exactly 1 time 14434709 (15.42%) aligned >1 times 98.36% overall alignment rate Time searching: 01:16:52 Overall time: 01:16:52 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 26706912 / 92051237 = 0.2901 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 08:55:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:55:41: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:55:41: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:55:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:55:41: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:55:41: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:55:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:55:42: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:55:42: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:55:48: 1000000 INFO @ Fri, 05 Jul 2019 08:55:50: 1000000 INFO @ Fri, 05 Jul 2019 08:55:51: 1000000 INFO @ Fri, 05 Jul 2019 08:55:56: 2000000 INFO @ Fri, 05 Jul 2019 08:55:58: 2000000 INFO @ Fri, 05 Jul 2019 08:55:59: 2000000 INFO @ Fri, 05 Jul 2019 08:56:03: 3000000 INFO @ Fri, 05 Jul 2019 08:56:06: 3000000 INFO @ Fri, 05 Jul 2019 08:56:07: 3000000 INFO @ Fri, 05 Jul 2019 08:56:11: 4000000 INFO @ Fri, 05 Jul 2019 08:56:14: 4000000 INFO @ Fri, 05 Jul 2019 08:56:15: 4000000 INFO @ Fri, 05 Jul 2019 08:56:18: 5000000 INFO @ Fri, 05 Jul 2019 08:56:22: 5000000 INFO @ Fri, 05 Jul 2019 08:56:24: 5000000 INFO @ Fri, 05 Jul 2019 08:56:26: 6000000 INFO @ Fri, 05 Jul 2019 08:56:31: 6000000 INFO @ Fri, 05 Jul 2019 08:56:32: 6000000 INFO @ Fri, 05 Jul 2019 08:56:33: 7000000 INFO @ Fri, 05 Jul 2019 08:56:39: 7000000 INFO @ Fri, 05 Jul 2019 08:56:40: 7000000 INFO @ Fri, 05 Jul 2019 08:56:40: 8000000 INFO @ Fri, 05 Jul 2019 08:56:47: 8000000 INFO @ Fri, 05 Jul 2019 08:56:48: 9000000 INFO @ Fri, 05 Jul 2019 08:56:48: 8000000 INFO @ Fri, 05 Jul 2019 08:56:55: 9000000 INFO @ Fri, 05 Jul 2019 08:56:55: 10000000 INFO @ Fri, 05 Jul 2019 08:56:56: 9000000 INFO @ Fri, 05 Jul 2019 08:57:03: 11000000 INFO @ Fri, 05 Jul 2019 08:57:03: 10000000 INFO @ Fri, 05 Jul 2019 08:57:05: 10000000 INFO @ Fri, 05 Jul 2019 08:57:10: 12000000 INFO @ Fri, 05 Jul 2019 08:57:11: 11000000 INFO @ Fri, 05 Jul 2019 08:57:13: 11000000 INFO @ Fri, 05 Jul 2019 08:57:17: 13000000 INFO @ Fri, 05 Jul 2019 08:57:20: 12000000 INFO @ Fri, 05 Jul 2019 08:57:21: 12000000 INFO @ Fri, 05 Jul 2019 08:57:25: 14000000 INFO @ Fri, 05 Jul 2019 08:57:28: 13000000 INFO @ Fri, 05 Jul 2019 08:57:29: 13000000 INFO @ Fri, 05 Jul 2019 08:57:32: 15000000 INFO @ Fri, 05 Jul 2019 08:57:36: 14000000 INFO @ Fri, 05 Jul 2019 08:57:37: 14000000 INFO @ Fri, 05 Jul 2019 08:57:39: 16000000 INFO @ Fri, 05 Jul 2019 08:57:44: 15000000 INFO @ Fri, 05 Jul 2019 08:57:45: 15000000 INFO @ Fri, 05 Jul 2019 08:57:47: 17000000 INFO @ Fri, 05 Jul 2019 08:57:52: 16000000 INFO @ Fri, 05 Jul 2019 08:57:53: 16000000 INFO @ Fri, 05 Jul 2019 08:57:54: 18000000 INFO @ Fri, 05 Jul 2019 08:58:00: 17000000 INFO @ Fri, 05 Jul 2019 08:58:02: 19000000 INFO @ Fri, 05 Jul 2019 08:58:02: 17000000 INFO @ Fri, 05 Jul 2019 08:58:09: 18000000 INFO @ Fri, 05 Jul 2019 08:58:09: 20000000 INFO @ Fri, 05 Jul 2019 08:58:11: 18000000 INFO @ Fri, 05 Jul 2019 08:58:17: 21000000 INFO @ Fri, 05 Jul 2019 08:58:18: 19000000 INFO @ Fri, 05 Jul 2019 08:58:21: 19000000 INFO @ Fri, 05 Jul 2019 08:58:25: 22000000 INFO @ Fri, 05 Jul 2019 08:58:27: 20000000 INFO @ Fri, 05 Jul 2019 08:58:30: 20000000 INFO @ Fri, 05 Jul 2019 08:58:32: 23000000 INFO @ Fri, 05 Jul 2019 08:58:36: 21000000 INFO @ Fri, 05 Jul 2019 08:58:39: 21000000 INFO @ Fri, 05 Jul 2019 08:58:40: 24000000 INFO @ Fri, 05 Jul 2019 08:58:44: 22000000 INFO @ Fri, 05 Jul 2019 08:58:47: 25000000 INFO @ Fri, 05 Jul 2019 08:58:49: 22000000 INFO @ Fri, 05 Jul 2019 08:58:53: 23000000 INFO @ Fri, 05 Jul 2019 08:58:55: 26000000 INFO @ Fri, 05 Jul 2019 08:58:57: 23000000 INFO @ Fri, 05 Jul 2019 08:59:01: 24000000 INFO @ Fri, 05 Jul 2019 08:59:02: 27000000 INFO @ Fri, 05 Jul 2019 08:59:05: 24000000 INFO @ Fri, 05 Jul 2019 08:59:10: 28000000 INFO @ Fri, 05 Jul 2019 08:59:10: 25000000 INFO @ Fri, 05 Jul 2019 08:59:14: 25000000 INFO @ Fri, 05 Jul 2019 08:59:17: 29000000 INFO @ Fri, 05 Jul 2019 08:59:18: 26000000 INFO @ Fri, 05 Jul 2019 08:59:23: 26000000 INFO @ Fri, 05 Jul 2019 08:59:25: 30000000 INFO @ Fri, 05 Jul 2019 08:59:26: 27000000 INFO @ Fri, 05 Jul 2019 08:59:31: 27000000 INFO @ Fri, 05 Jul 2019 08:59:32: 31000000 INFO @ Fri, 05 Jul 2019 08:59:34: 28000000 INFO @ Fri, 05 Jul 2019 08:59:39: 28000000 INFO @ Fri, 05 Jul 2019 08:59:40: 32000000 INFO @ Fri, 05 Jul 2019 08:59:43: 29000000 INFO @ Fri, 05 Jul 2019 08:59:47: 33000000 INFO @ Fri, 05 Jul 2019 08:59:48: 29000000 INFO @ Fri, 05 Jul 2019 08:59:51: 30000000 INFO @ Fri, 05 Jul 2019 08:59:55: 34000000 INFO @ Fri, 05 Jul 2019 08:59:56: 30000000 INFO @ Fri, 05 Jul 2019 08:59:59: 31000000 INFO @ Fri, 05 Jul 2019 09:00:02: 35000000 INFO @ Fri, 05 Jul 2019 09:00:04: 31000000 INFO @ Fri, 05 Jul 2019 09:00:07: 32000000 INFO @ Fri, 05 Jul 2019 09:00:10: 36000000 INFO @ Fri, 05 Jul 2019 09:00:12: 32000000 INFO @ Fri, 05 Jul 2019 09:00:16: 33000000 INFO @ Fri, 05 Jul 2019 09:00:18: 37000000 INFO @ Fri, 05 Jul 2019 09:00:20: 33000000 INFO @ Fri, 05 Jul 2019 09:00:24: 34000000 INFO @ Fri, 05 Jul 2019 09:00:26: 38000000 INFO @ Fri, 05 Jul 2019 09:00:28: 34000000 INFO @ Fri, 05 Jul 2019 09:00:32: 35000000 INFO @ Fri, 05 Jul 2019 09:00:35: 39000000 INFO @ Fri, 05 Jul 2019 09:00:37: 35000000 INFO @ Fri, 05 Jul 2019 09:00:40: 36000000 INFO @ Fri, 05 Jul 2019 09:00:42: 40000000 INFO @ Fri, 05 Jul 2019 09:00:45: 36000000 INFO @ Fri, 05 Jul 2019 09:00:48: 37000000 INFO @ Fri, 05 Jul 2019 09:00:50: 41000000 INFO @ Fri, 05 Jul 2019 09:00:53: 37000000 INFO @ Fri, 05 Jul 2019 09:00:57: 38000000 INFO @ Fri, 05 Jul 2019 09:00:57: 42000000 INFO @ Fri, 05 Jul 2019 09:01:01: 38000000 INFO @ Fri, 05 Jul 2019 09:01:04: 43000000 INFO @ Fri, 05 Jul 2019 09:01:05: 39000000 INFO @ Fri, 05 Jul 2019 09:01:09: 39000000 INFO @ Fri, 05 Jul 2019 09:01:12: 44000000 INFO @ Fri, 05 Jul 2019 09:01:13: 40000000 INFO @ Fri, 05 Jul 2019 09:01:17: 40000000 INFO @ Fri, 05 Jul 2019 09:01:19: 45000000 INFO @ Fri, 05 Jul 2019 09:01:21: 41000000 INFO @ Fri, 05 Jul 2019 09:01:25: 41000000 INFO @ Fri, 05 Jul 2019 09:01:26: 46000000 INFO @ Fri, 05 Jul 2019 09:01:29: 42000000 INFO @ Fri, 05 Jul 2019 09:01:33: 42000000 INFO @ Fri, 05 Jul 2019 09:01:34: 47000000 INFO @ Fri, 05 Jul 2019 09:01:37: 43000000 INFO @ Fri, 05 Jul 2019 09:01:41: 48000000 INFO @ Fri, 05 Jul 2019 09:01:41: 43000000 INFO @ Fri, 05 Jul 2019 09:01:45: 44000000 INFO @ Fri, 05 Jul 2019 09:01:49: 49000000 INFO @ Fri, 05 Jul 2019 09:01:49: 44000000 INFO @ Fri, 05 Jul 2019 09:01:53: 45000000 INFO @ Fri, 05 Jul 2019 09:01:56: 50000000 INFO @ Fri, 05 Jul 2019 09:01:57: 45000000 INFO @ Fri, 05 Jul 2019 09:02:01: 46000000 INFO @ Fri, 05 Jul 2019 09:02:04: 51000000 INFO @ Fri, 05 Jul 2019 09:02:06: 46000000 INFO @ Fri, 05 Jul 2019 09:02:10: 47000000 INFO @ Fri, 05 Jul 2019 09:02:11: 52000000 INFO @ Fri, 05 Jul 2019 09:02:14: 47000000 INFO @ Fri, 05 Jul 2019 09:02:18: 48000000 INFO @ Fri, 05 Jul 2019 09:02:18: 53000000 INFO @ Fri, 05 Jul 2019 09:02:22: 48000000 INFO @ Fri, 05 Jul 2019 09:02:26: 54000000 INFO @ Fri, 05 Jul 2019 09:02:26: 49000000 INFO @ Fri, 05 Jul 2019 09:02:30: 49000000 INFO @ Fri, 05 Jul 2019 09:02:33: 55000000 INFO @ Fri, 05 Jul 2019 09:02:34: 50000000 INFO @ Fri, 05 Jul 2019 09:02:38: 50000000 INFO @ Fri, 05 Jul 2019 09:02:41: 56000000 INFO @ Fri, 05 Jul 2019 09:02:43: 51000000 INFO @ Fri, 05 Jul 2019 09:02:47: 51000000 INFO @ Fri, 05 Jul 2019 09:02:48: 57000000 INFO @ Fri, 05 Jul 2019 09:02:51: 52000000 INFO @ Fri, 05 Jul 2019 09:02:55: 52000000 INFO @ Fri, 05 Jul 2019 09:02:56: 58000000 INFO @ Fri, 05 Jul 2019 09:03:00: 53000000 INFO @ Fri, 05 Jul 2019 09:03:03: 53000000 INFO @ Fri, 05 Jul 2019 09:03:03: 59000000 INFO @ Fri, 05 Jul 2019 09:03:08: 54000000 INFO @ Fri, 05 Jul 2019 09:03:11: 60000000 INFO @ Fri, 05 Jul 2019 09:03:12: 54000000 INFO @ Fri, 05 Jul 2019 09:03:17: 55000000 INFO @ Fri, 05 Jul 2019 09:03:19: 61000000 INFO @ Fri, 05 Jul 2019 09:03:20: 55000000 INFO @ Fri, 05 Jul 2019 09:03:26: 56000000 INFO @ Fri, 05 Jul 2019 09:03:26: 62000000 INFO @ Fri, 05 Jul 2019 09:03:28: 56000000 INFO @ Fri, 05 Jul 2019 09:03:34: 63000000 INFO @ Fri, 05 Jul 2019 09:03:35: 57000000 INFO @ Fri, 05 Jul 2019 09:03:37: 57000000 INFO @ Fri, 05 Jul 2019 09:03:42: 64000000 INFO @ Fri, 05 Jul 2019 09:03:44: 58000000 INFO @ Fri, 05 Jul 2019 09:03:45: 58000000 INFO @ Fri, 05 Jul 2019 09:03:50: 65000000 INFO @ Fri, 05 Jul 2019 09:03:53: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:03:53: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:03:53: #1 total tags in treatment: 65344325 INFO @ Fri, 05 Jul 2019 09:03:53: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:03:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:03:53: 59000000 INFO @ Fri, 05 Jul 2019 09:03:54: 59000000 INFO @ Fri, 05 Jul 2019 09:03:54: #1 tags after filtering in treatment: 65344210 INFO @ Fri, 05 Jul 2019 09:03:54: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:03:54: #1 finished! INFO @ Fri, 05 Jul 2019 09:03:54: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:03:54: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:04:01: 60000000 INFO @ Fri, 05 Jul 2019 09:04:02: 60000000 INFO @ Fri, 05 Jul 2019 09:04:08: #2 number of paired peaks: 121806 INFO @ Fri, 05 Jul 2019 09:04:08: start model_add_line... INFO @ Fri, 05 Jul 2019 09:04:09: start X-correlation... INFO @ Fri, 05 Jul 2019 09:04:09: end of X-cor INFO @ Fri, 05 Jul 2019 09:04:09: #2 finished! INFO @ Fri, 05 Jul 2019 09:04:09: #2 predicted fragment length is 128 bps INFO @ Fri, 05 Jul 2019 09:04:09: #2 alternative fragment length(s) may be 128 bps INFO @ Fri, 05 Jul 2019 09:04:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.05_model.r INFO @ Fri, 05 Jul 2019 09:04:09: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:04:09: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:04:09: 61000000 INFO @ Fri, 05 Jul 2019 09:04:10: 61000000 INFO @ Fri, 05 Jul 2019 09:04:17: 62000000 INFO @ Fri, 05 Jul 2019 09:04:18: 62000000 INFO @ Fri, 05 Jul 2019 09:04:25: 63000000 INFO @ Fri, 05 Jul 2019 09:04:26: 63000000 INFO @ Fri, 05 Jul 2019 09:04:34: 64000000 INFO @ Fri, 05 Jul 2019 09:04:34: 64000000 INFO @ Fri, 05 Jul 2019 09:04:42: 65000000 INFO @ Fri, 05 Jul 2019 09:04:43: 65000000 INFO @ Fri, 05 Jul 2019 09:04:45: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:04:45: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:04:45: #1 total tags in treatment: 65344325 INFO @ Fri, 05 Jul 2019 09:04:45: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:04:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:04:46: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:04:46: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:04:46: #1 total tags in treatment: 65344325 INFO @ Fri, 05 Jul 2019 09:04:46: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:04:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:04:47: #1 tags after filtering in treatment: 65344210 INFO @ Fri, 05 Jul 2019 09:04:47: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:04:47: #1 finished! INFO @ Fri, 05 Jul 2019 09:04:47: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:04:47: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:04:48: #1 tags after filtering in treatment: 65344210 INFO @ Fri, 05 Jul 2019 09:04:48: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:04:48: #1 finished! INFO @ Fri, 05 Jul 2019 09:04:48: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:04:48: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:05:00: #2 number of paired peaks: 121806 INFO @ Fri, 05 Jul 2019 09:05:00: start model_add_line... INFO @ Fri, 05 Jul 2019 09:05:01: #2 number of paired peaks: 121806 INFO @ Fri, 05 Jul 2019 09:05:01: start model_add_line... INFO @ Fri, 05 Jul 2019 09:05:01: start X-correlation... INFO @ Fri, 05 Jul 2019 09:05:01: end of X-cor INFO @ Fri, 05 Jul 2019 09:05:01: #2 finished! INFO @ Fri, 05 Jul 2019 09:05:01: #2 predicted fragment length is 128 bps INFO @ Fri, 05 Jul 2019 09:05:01: #2 alternative fragment length(s) may be 128 bps INFO @ Fri, 05 Jul 2019 09:05:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.10_model.r INFO @ Fri, 05 Jul 2019 09:05:01: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:05:01: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:05:02: start X-correlation... INFO @ Fri, 05 Jul 2019 09:05:02: end of X-cor INFO @ Fri, 05 Jul 2019 09:05:02: #2 finished! INFO @ Fri, 05 Jul 2019 09:05:02: #2 predicted fragment length is 128 bps INFO @ Fri, 05 Jul 2019 09:05:02: #2 alternative fragment length(s) may be 128 bps INFO @ Fri, 05 Jul 2019 09:05:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.20_model.r INFO @ Fri, 05 Jul 2019 09:05:02: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:05:02: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:07:26: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:08:19: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:08:19: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:09:13: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:09:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:09:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.05_summits.bed INFO @ Fri, 05 Jul 2019 09:09:14: Done! pass1 - making usageList (137 chroms): 13 millis pass2 - checking and writing primary data (43764 records, 4 fields): 59 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:10:02: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:10:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:10:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.10_summits.bed INFO @ Fri, 05 Jul 2019 09:10:02: Done! pass1 - making usageList (74 chroms): 4 millis pass2 - checking and writing primary data (8692 records, 4 fields): 172 millis INFO @ Fri, 05 Jul 2019 09:10:03: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:10:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:10:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101947/ERX101947.20_summits.bed INFO @ Fri, 05 Jul 2019 09:10:03: Done! pass1 - making usageList (37 chroms): 2 millis pass2 - checking and writing primary data (799 records, 4 fields): 6 millis CompletedMACS2peakCalling CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。