Job ID = 2001624 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T21:27:45 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:45 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005101.2' 2019-07-04T21:27:50 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:50 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005101.2' 2019-07-04T21:27:54 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:54 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005101.2' 2019-07-04T21:27:55 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:55 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005106.2' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005101.2' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: connection busy while validating within network system module - Failed to KHttpFileRead('https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125762' (), 32768) from '172.19.7.42' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: connection busy while validating within network system module - Failed to KHttpFileRead('https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125762' (), 32768) from '172.19.7.42' 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: cmn_iter.c cmn_read_String( #84520961 ).VCursorCellDataDirect() -> RC(rcNS,rcNoTarg,rcValidating,rcConnection,rcBusy) 2019-07-04T21:27:59 fasterq-dump.2.9.6 err: sorter.c write_to_store().pack_read_2_4na() failed RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:00 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:00 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005106.2' 2019-07-04T21:28:05 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:05 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005106.2' 2019-07-04T21:28:09 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:09 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005106.2' 2019-07-04T21:28:14 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:14 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/refseq/NC_005106.2' 2019-07-04T21:28:14 fasterq-dump.2.9.6 err: cmn_iter.c cmn_read_String( #51286017 ).VCursorCellDataDirect() -> RC(rcXF,rcFunction,rcSelecting,rcData,rcCorrupt) 2019-07-04T21:28:14 fasterq-dump.2.9.6 err: sorter.c write_to_store().pack_read_2_4na() failed RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:14 fasterq-dump.2.9.6 err: sorter.c run_producer_pool().join_and_release_threads -> RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:14 fasterq-dump.2.9.6 err: sorter.c execute_lookup_production() -> RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:14 fasterq-dump.2.9.6 err: fasterq-dump.c produce_lookup_files() -> RC(rcVDB,rcNoTarg,rcWriting,rcFormat,rcNull) 2019-07-04T21:28:19 fasterq-dump.2.9.6 sys: connection busy while validating within network system module - Failed to Make Connection in KClientHttpOpen to 'sra-download.ncbi.nlm.nih.gov:443' 2019-07-04T21:28:19 fasterq-dump.2.9.6 err: connection busy while validating within network system module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/era3/ERR/ERR125/ERR125762' 2019-07-04T21:28:19 fasterq-dump.2.9.6 err: invalid accession 'ERR125762' 2019-07-04T22:06:05 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:06:05 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:06:55 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:09:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:10:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:36 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:13:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:13:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:13:41 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:20 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:14:57 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 120,318,498 reads read : 120,318,498 reads written : 120,318,498 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:03:05 120318498 reads; of these: 120318498 (100.00%) were unpaired; of these: 2143755 (1.78%) aligned 0 times 105912456 (88.03%) aligned exactly 1 time 12262287 (10.19%) aligned >1 times 98.22% overall alignment rate Time searching: 01:03:09 Overall time: 01:03:09 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 52 files... [bam_rmdupse_core] 75856931 / 118174743 = 0.6419 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 09:01:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:01:37: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:01:37: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:01:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:01:37: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:01:37: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:01:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:01:38: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:01:38: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:01:45: 1000000 INFO @ Fri, 05 Jul 2019 09:01:46: 1000000 INFO @ Fri, 05 Jul 2019 09:01:47: 1000000 INFO @ Fri, 05 Jul 2019 09:01:53: 2000000 INFO @ Fri, 05 Jul 2019 09:01:53: 2000000 INFO @ Fri, 05 Jul 2019 09:01:56: 2000000 INFO @ Fri, 05 Jul 2019 09:02:00: 3000000 INFO @ Fri, 05 Jul 2019 09:02:00: 3000000 INFO @ Fri, 05 Jul 2019 09:02:04: 3000000 INFO @ Fri, 05 Jul 2019 09:02:08: 4000000 INFO @ Fri, 05 Jul 2019 09:02:08: 4000000 INFO @ Fri, 05 Jul 2019 09:02:13: 4000000 INFO @ Fri, 05 Jul 2019 09:02:15: 5000000 INFO @ Fri, 05 Jul 2019 09:02:15: 5000000 INFO @ Fri, 05 Jul 2019 09:02:21: 5000000 INFO @ Fri, 05 Jul 2019 09:02:23: 6000000 INFO @ Fri, 05 Jul 2019 09:02:23: 6000000 INFO @ Fri, 05 Jul 2019 09:02:30: 7000000 INFO @ Fri, 05 Jul 2019 09:02:30: 6000000 INFO @ Fri, 05 Jul 2019 09:02:30: 7000000 INFO @ Fri, 05 Jul 2019 09:02:37: 8000000 INFO @ Fri, 05 Jul 2019 09:02:38: 8000000 INFO @ Fri, 05 Jul 2019 09:02:39: 7000000 INFO @ Fri, 05 Jul 2019 09:02:45: 9000000 INFO @ Fri, 05 Jul 2019 09:02:45: 9000000 INFO @ Fri, 05 Jul 2019 09:02:47: 8000000 INFO @ Fri, 05 Jul 2019 09:02:52: 10000000 INFO @ Fri, 05 Jul 2019 09:02:53: 10000000 INFO @ Fri, 05 Jul 2019 09:02:56: 9000000 INFO @ Fri, 05 Jul 2019 09:02:59: 11000000 INFO @ Fri, 05 Jul 2019 09:03:00: 11000000 INFO @ Fri, 05 Jul 2019 09:03:05: 10000000 INFO @ Fri, 05 Jul 2019 09:03:06: 12000000 INFO @ Fri, 05 Jul 2019 09:03:08: 12000000 INFO @ Fri, 05 Jul 2019 09:03:13: 11000000 INFO @ Fri, 05 Jul 2019 09:03:14: 13000000 INFO @ Fri, 05 Jul 2019 09:03:16: 13000000 INFO @ Fri, 05 Jul 2019 09:03:21: 14000000 INFO @ Fri, 05 Jul 2019 09:03:22: 12000000 INFO @ Fri, 05 Jul 2019 09:03:23: 14000000 INFO @ Fri, 05 Jul 2019 09:03:29: 15000000 INFO @ Fri, 05 Jul 2019 09:03:31: 13000000 INFO @ Fri, 05 Jul 2019 09:03:31: 15000000 INFO @ Fri, 05 Jul 2019 09:03:36: 16000000 INFO @ Fri, 05 Jul 2019 09:03:39: 16000000 INFO @ Fri, 05 Jul 2019 09:03:39: 14000000 INFO @ Fri, 05 Jul 2019 09:03:43: 17000000 INFO @ Fri, 05 Jul 2019 09:03:46: 17000000 INFO @ Fri, 05 Jul 2019 09:03:48: 15000000 INFO @ Fri, 05 Jul 2019 09:03:50: 18000000 INFO @ Fri, 05 Jul 2019 09:03:53: 18000000 INFO @ Fri, 05 Jul 2019 09:03:56: 16000000 INFO @ Fri, 05 Jul 2019 09:03:57: 19000000 INFO @ Fri, 05 Jul 2019 09:04:01: 19000000 INFO @ Fri, 05 Jul 2019 09:04:04: 20000000 INFO @ Fri, 05 Jul 2019 09:04:05: 17000000 INFO @ Fri, 05 Jul 2019 09:04:08: 20000000 INFO @ Fri, 05 Jul 2019 09:04:11: 21000000 INFO @ Fri, 05 Jul 2019 09:04:14: 18000000 INFO @ Fri, 05 Jul 2019 09:04:16: 21000000 INFO @ Fri, 05 Jul 2019 09:04:18: 22000000 INFO @ Fri, 05 Jul 2019 09:04:23: 19000000 INFO @ Fri, 05 Jul 2019 09:04:23: 22000000 INFO @ Fri, 05 Jul 2019 09:04:24: 23000000 INFO @ Fri, 05 Jul 2019 09:04:31: 23000000 INFO @ Fri, 05 Jul 2019 09:04:31: 24000000 INFO @ Fri, 05 Jul 2019 09:04:31: 20000000 INFO @ Fri, 05 Jul 2019 09:04:38: 24000000 INFO @ Fri, 05 Jul 2019 09:04:38: 25000000 INFO @ Fri, 05 Jul 2019 09:04:40: 21000000 INFO @ Fri, 05 Jul 2019 09:04:45: 26000000 INFO @ Fri, 05 Jul 2019 09:04:45: 25000000 INFO @ Fri, 05 Jul 2019 09:04:49: 22000000 INFO @ Fri, 05 Jul 2019 09:04:52: 27000000 INFO @ Fri, 05 Jul 2019 09:04:53: 26000000 INFO @ Fri, 05 Jul 2019 09:04:57: 23000000 INFO @ Fri, 05 Jul 2019 09:05:00: 28000000 INFO @ Fri, 05 Jul 2019 09:05:00: 27000000 INFO @ Fri, 05 Jul 2019 09:05:06: 24000000 INFO @ Fri, 05 Jul 2019 09:05:07: 29000000 INFO @ Fri, 05 Jul 2019 09:05:08: 28000000 INFO @ Fri, 05 Jul 2019 09:05:14: 30000000 INFO @ Fri, 05 Jul 2019 09:05:15: 25000000 INFO @ Fri, 05 Jul 2019 09:05:15: 29000000 INFO @ Fri, 05 Jul 2019 09:05:21: 31000000 INFO @ Fri, 05 Jul 2019 09:05:22: 30000000 INFO @ Fri, 05 Jul 2019 09:05:24: 26000000 INFO @ Fri, 05 Jul 2019 09:05:28: 32000000 INFO @ Fri, 05 Jul 2019 09:05:30: 31000000 INFO @ Fri, 05 Jul 2019 09:05:32: 27000000 INFO @ Fri, 05 Jul 2019 09:05:35: 33000000 INFO @ Fri, 05 Jul 2019 09:05:37: 32000000 INFO @ Fri, 05 Jul 2019 09:05:41: 28000000 INFO @ Fri, 05 Jul 2019 09:05:43: 34000000 INFO @ Fri, 05 Jul 2019 09:05:45: 33000000 INFO @ Fri, 05 Jul 2019 09:05:50: 29000000 INFO @ Fri, 05 Jul 2019 09:05:50: 35000000 INFO @ Fri, 05 Jul 2019 09:05:52: 34000000 INFO @ Fri, 05 Jul 2019 09:05:57: 36000000 INFO @ Fri, 05 Jul 2019 09:05:58: 30000000 INFO @ Fri, 05 Jul 2019 09:06:00: 35000000 INFO @ Fri, 05 Jul 2019 09:06:05: 37000000 INFO @ Fri, 05 Jul 2019 09:06:07: 31000000 INFO @ Fri, 05 Jul 2019 09:06:07: 36000000 INFO @ Fri, 05 Jul 2019 09:06:11: 38000000 INFO @ Fri, 05 Jul 2019 09:06:15: 37000000 INFO @ Fri, 05 Jul 2019 09:06:16: 32000000 INFO @ Fri, 05 Jul 2019 09:06:18: 39000000 INFO @ Fri, 05 Jul 2019 09:06:22: 38000000 INFO @ Fri, 05 Jul 2019 09:06:24: 33000000 INFO @ Fri, 05 Jul 2019 09:06:25: 40000000 INFO @ Fri, 05 Jul 2019 09:06:30: 39000000 INFO @ Fri, 05 Jul 2019 09:06:33: 34000000 INFO @ Fri, 05 Jul 2019 09:06:35: 41000000 INFO @ Fri, 05 Jul 2019 09:06:37: 40000000 INFO @ Fri, 05 Jul 2019 09:06:42: 35000000 INFO @ Fri, 05 Jul 2019 09:06:43: 42000000 INFO @ Fri, 05 Jul 2019 09:06:45: 41000000 INFO @ Fri, 05 Jul 2019 09:06:46: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:06:46: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:06:46: #1 total tags in treatment: 42317812 INFO @ Fri, 05 Jul 2019 09:06:46: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:06:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:06:47: #1 tags after filtering in treatment: 42317614 INFO @ Fri, 05 Jul 2019 09:06:47: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:06:47: #1 finished! INFO @ Fri, 05 Jul 2019 09:06:47: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:06:47: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:06:50: 36000000 INFO @ Fri, 05 Jul 2019 09:06:52: 42000000 INFO @ Fri, 05 Jul 2019 09:06:55: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:06:55: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:06:55: #1 total tags in treatment: 42317812 INFO @ Fri, 05 Jul 2019 09:06:55: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:06:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:06:56: #1 tags after filtering in treatment: 42317614 INFO @ Fri, 05 Jul 2019 09:06:56: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:06:56: #1 finished! INFO @ Fri, 05 Jul 2019 09:06:56: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:06:56: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:06:58: #2 number of paired peaks: 97557 INFO @ Fri, 05 Jul 2019 09:06:58: start model_add_line... INFO @ Fri, 05 Jul 2019 09:06:59: 37000000 INFO @ Fri, 05 Jul 2019 09:06:59: start X-correlation... INFO @ Fri, 05 Jul 2019 09:06:59: end of X-cor INFO @ Fri, 05 Jul 2019 09:06:59: #2 finished! INFO @ Fri, 05 Jul 2019 09:06:59: #2 predicted fragment length is 142 bps INFO @ Fri, 05 Jul 2019 09:06:59: #2 alternative fragment length(s) may be 3,142 bps INFO @ Fri, 05 Jul 2019 09:06:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.20_model.r INFO @ Fri, 05 Jul 2019 09:06:59: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:06:59: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:07:07: #2 number of paired peaks: 97557 INFO @ Fri, 05 Jul 2019 09:07:07: start model_add_line... INFO @ Fri, 05 Jul 2019 09:07:07: 38000000 INFO @ Fri, 05 Jul 2019 09:07:08: start X-correlation... INFO @ Fri, 05 Jul 2019 09:07:08: end of X-cor INFO @ Fri, 05 Jul 2019 09:07:08: #2 finished! INFO @ Fri, 05 Jul 2019 09:07:08: #2 predicted fragment length is 142 bps INFO @ Fri, 05 Jul 2019 09:07:08: #2 alternative fragment length(s) may be 3,142 bps INFO @ Fri, 05 Jul 2019 09:07:08: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.05_model.r INFO @ Fri, 05 Jul 2019 09:07:08: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:07:08: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:07:16: 39000000 INFO @ Fri, 05 Jul 2019 09:07:24: 40000000 INFO @ Fri, 05 Jul 2019 09:07:33: 41000000 INFO @ Fri, 05 Jul 2019 09:07:41: 42000000 INFO @ Fri, 05 Jul 2019 09:07:44: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:07:44: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:07:44: #1 total tags in treatment: 42317812 INFO @ Fri, 05 Jul 2019 09:07:44: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:07:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:07:45: #1 tags after filtering in treatment: 42317614 INFO @ Fri, 05 Jul 2019 09:07:45: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:07:45: #1 finished! INFO @ Fri, 05 Jul 2019 09:07:45: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:07:45: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:07:56: #2 number of paired peaks: 97557 INFO @ Fri, 05 Jul 2019 09:07:56: start model_add_line... INFO @ Fri, 05 Jul 2019 09:07:57: start X-correlation... INFO @ Fri, 05 Jul 2019 09:07:58: end of X-cor INFO @ Fri, 05 Jul 2019 09:07:58: #2 finished! INFO @ Fri, 05 Jul 2019 09:07:58: #2 predicted fragment length is 142 bps INFO @ Fri, 05 Jul 2019 09:07:58: #2 alternative fragment length(s) may be 3,142 bps INFO @ Fri, 05 Jul 2019 09:07:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.10_model.r INFO @ Fri, 05 Jul 2019 09:07:58: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:07:58: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:09:05: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:09:10: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:10:02: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:10:13: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:10:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:10:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.20_summits.bed INFO @ Fri, 05 Jul 2019 09:10:14: Done! pass1 - making usageList (139 chroms): 14 millis pass2 - checking and writing primary data (43670 records, 4 fields): 63 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:10:17: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:10:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:10:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.05_summits.bed INFO @ Fri, 05 Jul 2019 09:10:19: Done! pass1 - making usageList (181 chroms): 16 millis pass2 - checking and writing primary data (78873 records, 4 fields): 105 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:11:09: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:11:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:11:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101946/ERX101946.10_summits.bed INFO @ Fri, 05 Jul 2019 09:11:10: Done! pass1 - making usageList (158 chroms): 13 millis pass2 - checking and writing primary data (61415 records, 4 fields): 83 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。