Job ID = 2001620 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T21:25:01 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T21:29:49 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T21:34:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T21:49:50 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T21:55:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T21:59:58 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:01:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:02:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:02:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:02:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:24 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 120,298,163 reads read : 120,298,163 reads written : 120,298,163 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:15:03 120298163 reads; of these: 120298163 (100.00%) were unpaired; of these: 6536059 (5.43%) aligned 0 times 83053742 (69.04%) aligned exactly 1 time 30708362 (25.53%) aligned >1 times 94.57% overall alignment rate Time searching: 01:15:06 Overall time: 01:15:06 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 48 files... [bam_rmdupse_core] 12265904 / 113762104 = 0.1078 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 09:28:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:28:44: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:28:44: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:28:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:28:44: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:28:44: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:28:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 09:28:45: #1 read tag files... INFO @ Fri, 05 Jul 2019 09:28:45: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 09:28:52: 1000000 INFO @ Fri, 05 Jul 2019 09:28:53: 1000000 INFO @ Fri, 05 Jul 2019 09:28:53: 1000000 INFO @ Fri, 05 Jul 2019 09:29:00: 2000000 INFO @ Fri, 05 Jul 2019 09:29:00: 2000000 INFO @ Fri, 05 Jul 2019 09:29:02: 2000000 INFO @ Fri, 05 Jul 2019 09:29:07: 3000000 INFO @ Fri, 05 Jul 2019 09:29:08: 3000000 INFO @ Fri, 05 Jul 2019 09:29:11: 3000000 INFO @ Fri, 05 Jul 2019 09:29:15: 4000000 INFO @ Fri, 05 Jul 2019 09:29:15: 4000000 INFO @ Fri, 05 Jul 2019 09:29:20: 4000000 INFO @ Fri, 05 Jul 2019 09:29:22: 5000000 INFO @ Fri, 05 Jul 2019 09:29:22: 5000000 INFO @ Fri, 05 Jul 2019 09:29:29: 5000000 INFO @ Fri, 05 Jul 2019 09:29:29: 6000000 INFO @ Fri, 05 Jul 2019 09:29:29: 6000000 INFO @ Fri, 05 Jul 2019 09:29:36: 7000000 INFO @ Fri, 05 Jul 2019 09:29:37: 7000000 INFO @ Fri, 05 Jul 2019 09:29:37: 6000000 INFO @ Fri, 05 Jul 2019 09:29:43: 8000000 INFO @ Fri, 05 Jul 2019 09:29:44: 8000000 INFO @ Fri, 05 Jul 2019 09:29:46: 7000000 INFO @ Fri, 05 Jul 2019 09:29:50: 9000000 INFO @ Fri, 05 Jul 2019 09:29:51: 9000000 INFO @ Fri, 05 Jul 2019 09:29:55: 8000000 INFO @ Fri, 05 Jul 2019 09:29:57: 10000000 INFO @ Fri, 05 Jul 2019 09:29:58: 10000000 INFO @ Fri, 05 Jul 2019 09:30:04: 11000000 INFO @ Fri, 05 Jul 2019 09:30:04: 9000000 INFO @ Fri, 05 Jul 2019 09:30:05: 11000000 INFO @ Fri, 05 Jul 2019 09:30:10: 12000000 INFO @ Fri, 05 Jul 2019 09:30:12: 12000000 INFO @ Fri, 05 Jul 2019 09:30:12: 10000000 INFO @ Fri, 05 Jul 2019 09:30:17: 13000000 INFO @ Fri, 05 Jul 2019 09:30:19: 13000000 INFO @ Fri, 05 Jul 2019 09:30:21: 11000000 INFO @ Fri, 05 Jul 2019 09:30:24: 14000000 INFO @ Fri, 05 Jul 2019 09:30:26: 14000000 INFO @ Fri, 05 Jul 2019 09:30:30: 12000000 INFO @ Fri, 05 Jul 2019 09:30:31: 15000000 INFO @ Fri, 05 Jul 2019 09:30:33: 15000000 INFO @ Fri, 05 Jul 2019 09:30:38: 16000000 INFO @ Fri, 05 Jul 2019 09:30:38: 13000000 INFO @ Fri, 05 Jul 2019 09:30:40: 16000000 INFO @ Fri, 05 Jul 2019 09:30:45: 17000000 INFO @ Fri, 05 Jul 2019 09:30:47: 14000000 INFO @ Fri, 05 Jul 2019 09:30:47: 17000000 INFO @ Fri, 05 Jul 2019 09:30:52: 18000000 INFO @ Fri, 05 Jul 2019 09:30:55: 18000000 INFO @ Fri, 05 Jul 2019 09:30:56: 15000000 INFO @ Fri, 05 Jul 2019 09:30:58: 19000000 INFO @ Fri, 05 Jul 2019 09:31:02: 19000000 INFO @ Fri, 05 Jul 2019 09:31:04: 16000000 INFO @ Fri, 05 Jul 2019 09:31:05: 20000000 INFO @ Fri, 05 Jul 2019 09:31:09: 20000000 INFO @ Fri, 05 Jul 2019 09:31:12: 21000000 INFO @ Fri, 05 Jul 2019 09:31:13: 17000000 INFO @ Fri, 05 Jul 2019 09:31:16: 21000000 INFO @ Fri, 05 Jul 2019 09:31:19: 22000000 INFO @ Fri, 05 Jul 2019 09:31:21: 18000000 INFO @ Fri, 05 Jul 2019 09:31:24: 22000000 INFO @ Fri, 05 Jul 2019 09:31:26: 23000000 INFO @ Fri, 05 Jul 2019 09:31:30: 19000000 INFO @ Fri, 05 Jul 2019 09:31:31: 23000000 INFO @ Fri, 05 Jul 2019 09:31:33: 24000000 INFO @ Fri, 05 Jul 2019 09:31:38: 24000000 INFO @ Fri, 05 Jul 2019 09:31:38: 20000000 INFO @ Fri, 05 Jul 2019 09:31:39: 25000000 INFO @ Fri, 05 Jul 2019 09:31:45: 25000000 INFO @ Fri, 05 Jul 2019 09:31:46: 26000000 INFO @ Fri, 05 Jul 2019 09:31:47: 21000000 INFO @ Fri, 05 Jul 2019 09:31:52: 26000000 INFO @ Fri, 05 Jul 2019 09:31:53: 27000000 INFO @ Fri, 05 Jul 2019 09:31:55: 22000000 INFO @ Fri, 05 Jul 2019 09:31:59: 27000000 INFO @ Fri, 05 Jul 2019 09:32:00: 28000000 INFO @ Fri, 05 Jul 2019 09:32:04: 23000000 INFO @ Fri, 05 Jul 2019 09:32:06: 28000000 INFO @ Fri, 05 Jul 2019 09:32:07: 29000000 INFO @ Fri, 05 Jul 2019 09:32:12: 24000000 INFO @ Fri, 05 Jul 2019 09:32:13: 29000000 INFO @ Fri, 05 Jul 2019 09:32:13: 30000000 INFO @ Fri, 05 Jul 2019 09:32:20: 30000000 INFO @ Fri, 05 Jul 2019 09:32:20: 31000000 INFO @ Fri, 05 Jul 2019 09:32:21: 25000000 INFO @ Fri, 05 Jul 2019 09:32:27: 32000000 INFO @ Fri, 05 Jul 2019 09:32:27: 31000000 INFO @ Fri, 05 Jul 2019 09:32:29: 26000000 INFO @ Fri, 05 Jul 2019 09:32:34: 33000000 INFO @ Fri, 05 Jul 2019 09:32:35: 32000000 INFO @ Fri, 05 Jul 2019 09:32:38: 27000000 INFO @ Fri, 05 Jul 2019 09:32:41: 34000000 INFO @ Fri, 05 Jul 2019 09:32:42: 33000000 INFO @ Fri, 05 Jul 2019 09:32:46: 28000000 INFO @ Fri, 05 Jul 2019 09:32:48: 35000000 INFO @ Fri, 05 Jul 2019 09:32:49: 34000000 INFO @ Fri, 05 Jul 2019 09:32:54: 29000000 INFO @ Fri, 05 Jul 2019 09:32:55: 36000000 INFO @ Fri, 05 Jul 2019 09:32:55: 35000000 INFO @ Fri, 05 Jul 2019 09:33:01: 37000000 INFO @ Fri, 05 Jul 2019 09:33:02: 36000000 INFO @ Fri, 05 Jul 2019 09:33:03: 30000000 INFO @ Fri, 05 Jul 2019 09:33:08: 38000000 INFO @ Fri, 05 Jul 2019 09:33:09: 37000000 INFO @ Fri, 05 Jul 2019 09:33:11: 31000000 INFO @ Fri, 05 Jul 2019 09:33:15: 39000000 INFO @ Fri, 05 Jul 2019 09:33:16: 38000000 INFO @ Fri, 05 Jul 2019 09:33:20: 32000000 INFO @ Fri, 05 Jul 2019 09:33:23: 40000000 INFO @ Fri, 05 Jul 2019 09:33:23: 39000000 INFO @ Fri, 05 Jul 2019 09:33:28: 33000000 INFO @ Fri, 05 Jul 2019 09:33:30: 40000000 INFO @ Fri, 05 Jul 2019 09:33:30: 41000000 INFO @ Fri, 05 Jul 2019 09:33:37: 34000000 INFO @ Fri, 05 Jul 2019 09:33:37: 41000000 INFO @ Fri, 05 Jul 2019 09:33:37: 42000000 INFO @ Fri, 05 Jul 2019 09:33:44: 42000000 INFO @ Fri, 05 Jul 2019 09:33:44: 43000000 INFO @ Fri, 05 Jul 2019 09:33:45: 35000000 INFO @ Fri, 05 Jul 2019 09:33:51: 43000000 INFO @ Fri, 05 Jul 2019 09:33:52: 44000000 INFO @ Fri, 05 Jul 2019 09:33:54: 36000000 INFO @ Fri, 05 Jul 2019 09:33:59: 44000000 INFO @ Fri, 05 Jul 2019 09:33:59: 45000000 INFO @ Fri, 05 Jul 2019 09:34:02: 37000000 INFO @ Fri, 05 Jul 2019 09:34:06: 45000000 INFO @ Fri, 05 Jul 2019 09:34:06: 46000000 INFO @ Fri, 05 Jul 2019 09:34:10: 38000000 INFO @ Fri, 05 Jul 2019 09:34:13: 46000000 INFO @ Fri, 05 Jul 2019 09:34:14: 47000000 INFO @ Fri, 05 Jul 2019 09:34:18: 39000000 INFO @ Fri, 05 Jul 2019 09:34:21: 47000000 INFO @ Fri, 05 Jul 2019 09:34:21: 48000000 INFO @ Fri, 05 Jul 2019 09:34:26: 40000000 INFO @ Fri, 05 Jul 2019 09:34:28: 48000000 INFO @ Fri, 05 Jul 2019 09:34:28: 49000000 INFO @ Fri, 05 Jul 2019 09:34:34: 41000000 INFO @ Fri, 05 Jul 2019 09:34:35: 49000000 INFO @ Fri, 05 Jul 2019 09:34:35: 50000000 INFO @ Fri, 05 Jul 2019 09:34:42: 42000000 INFO @ Fri, 05 Jul 2019 09:34:43: 50000000 INFO @ Fri, 05 Jul 2019 09:34:43: 51000000 INFO @ Fri, 05 Jul 2019 09:34:50: 51000000 INFO @ Fri, 05 Jul 2019 09:34:50: 52000000 INFO @ Fri, 05 Jul 2019 09:34:51: 43000000 INFO @ Fri, 05 Jul 2019 09:34:58: 52000000 INFO @ Fri, 05 Jul 2019 09:34:58: 53000000 INFO @ Fri, 05 Jul 2019 09:34:59: 44000000 INFO @ Fri, 05 Jul 2019 09:35:05: 53000000 INFO @ Fri, 05 Jul 2019 09:35:05: 54000000 INFO @ Fri, 05 Jul 2019 09:35:08: 45000000 INFO @ Fri, 05 Jul 2019 09:35:12: 54000000 INFO @ Fri, 05 Jul 2019 09:35:12: 55000000 INFO @ Fri, 05 Jul 2019 09:35:16: 46000000 INFO @ Fri, 05 Jul 2019 09:35:20: 56000000 INFO @ Fri, 05 Jul 2019 09:35:20: 55000000 INFO @ Fri, 05 Jul 2019 09:35:24: 47000000 INFO @ Fri, 05 Jul 2019 09:35:27: 57000000 INFO @ Fri, 05 Jul 2019 09:35:27: 56000000 INFO @ Fri, 05 Jul 2019 09:35:33: 48000000 INFO @ Fri, 05 Jul 2019 09:35:34: 57000000 INFO @ Fri, 05 Jul 2019 09:35:35: 58000000 INFO @ Fri, 05 Jul 2019 09:35:41: 49000000 INFO @ Fri, 05 Jul 2019 09:35:42: 59000000 INFO @ Fri, 05 Jul 2019 09:35:42: 58000000 INFO @ Fri, 05 Jul 2019 09:35:49: 60000000 INFO @ Fri, 05 Jul 2019 09:35:49: 59000000 INFO @ Fri, 05 Jul 2019 09:35:50: 50000000 INFO @ Fri, 05 Jul 2019 09:35:57: 61000000 INFO @ Fri, 05 Jul 2019 09:35:57: 60000000 INFO @ Fri, 05 Jul 2019 09:35:58: 51000000 INFO @ Fri, 05 Jul 2019 09:36:04: 62000000 INFO @ Fri, 05 Jul 2019 09:36:04: 61000000 INFO @ Fri, 05 Jul 2019 09:36:07: 52000000 INFO @ Fri, 05 Jul 2019 09:36:11: 63000000 INFO @ Fri, 05 Jul 2019 09:36:11: 62000000 INFO @ Fri, 05 Jul 2019 09:36:15: 53000000 INFO @ Fri, 05 Jul 2019 09:36:19: 64000000 INFO @ Fri, 05 Jul 2019 09:36:19: 63000000 INFO @ Fri, 05 Jul 2019 09:36:23: 54000000 INFO @ Fri, 05 Jul 2019 09:36:26: 65000000 INFO @ Fri, 05 Jul 2019 09:36:26: 64000000 INFO @ Fri, 05 Jul 2019 09:36:32: 55000000 INFO @ Fri, 05 Jul 2019 09:36:33: 66000000 INFO @ Fri, 05 Jul 2019 09:36:33: 65000000 INFO @ Fri, 05 Jul 2019 09:36:40: 56000000 INFO @ Fri, 05 Jul 2019 09:36:41: 67000000 INFO @ Fri, 05 Jul 2019 09:36:41: 66000000 INFO @ Fri, 05 Jul 2019 09:36:48: 68000000 INFO @ Fri, 05 Jul 2019 09:36:48: 67000000 INFO @ Fri, 05 Jul 2019 09:36:49: 57000000 INFO @ Fri, 05 Jul 2019 09:36:55: 69000000 INFO @ Fri, 05 Jul 2019 09:36:55: 68000000 INFO @ Fri, 05 Jul 2019 09:36:57: 58000000 INFO @ Fri, 05 Jul 2019 09:37:02: 70000000 INFO @ Fri, 05 Jul 2019 09:37:03: 69000000 INFO @ Fri, 05 Jul 2019 09:37:05: 59000000 INFO @ Fri, 05 Jul 2019 09:37:10: 71000000 INFO @ Fri, 05 Jul 2019 09:37:10: 70000000 INFO @ Fri, 05 Jul 2019 09:37:14: 60000000 INFO @ Fri, 05 Jul 2019 09:37:17: 72000000 INFO @ Fri, 05 Jul 2019 09:37:17: 71000000 INFO @ Fri, 05 Jul 2019 09:37:22: 61000000 INFO @ Fri, 05 Jul 2019 09:37:25: 73000000 INFO @ Fri, 05 Jul 2019 09:37:25: 72000000 INFO @ Fri, 05 Jul 2019 09:37:31: 62000000 INFO @ Fri, 05 Jul 2019 09:37:32: 74000000 INFO @ Fri, 05 Jul 2019 09:37:32: 73000000 INFO @ Fri, 05 Jul 2019 09:37:39: 63000000 INFO @ Fri, 05 Jul 2019 09:37:39: 75000000 INFO @ Fri, 05 Jul 2019 09:37:39: 74000000 INFO @ Fri, 05 Jul 2019 09:37:47: 76000000 INFO @ Fri, 05 Jul 2019 09:37:47: 75000000 INFO @ Fri, 05 Jul 2019 09:37:47: 64000000 INFO @ Fri, 05 Jul 2019 09:37:54: 77000000 INFO @ Fri, 05 Jul 2019 09:37:54: 76000000 INFO @ Fri, 05 Jul 2019 09:37:56: 65000000 INFO @ Fri, 05 Jul 2019 09:38:01: 78000000 INFO @ Fri, 05 Jul 2019 09:38:01: 77000000 INFO @ Fri, 05 Jul 2019 09:38:04: 66000000 INFO @ Fri, 05 Jul 2019 09:38:09: 79000000 INFO @ Fri, 05 Jul 2019 09:38:09: 78000000 INFO @ Fri, 05 Jul 2019 09:38:13: 67000000 INFO @ Fri, 05 Jul 2019 09:38:17: 80000000 INFO @ Fri, 05 Jul 2019 09:38:17: 79000000 INFO @ Fri, 05 Jul 2019 09:38:21: 68000000 INFO @ Fri, 05 Jul 2019 09:38:24: 81000000 INFO @ Fri, 05 Jul 2019 09:38:24: 80000000 INFO @ Fri, 05 Jul 2019 09:38:29: 69000000 INFO @ Fri, 05 Jul 2019 09:38:32: 82000000 INFO @ Fri, 05 Jul 2019 09:38:32: 81000000 INFO @ Fri, 05 Jul 2019 09:38:38: 70000000 INFO @ Fri, 05 Jul 2019 09:38:39: 83000000 INFO @ Fri, 05 Jul 2019 09:38:39: 82000000 INFO @ Fri, 05 Jul 2019 09:38:46: 71000000 INFO @ Fri, 05 Jul 2019 09:38:46: 84000000 INFO @ Fri, 05 Jul 2019 09:38:46: 83000000 INFO @ Fri, 05 Jul 2019 09:38:54: 85000000 INFO @ Fri, 05 Jul 2019 09:38:54: 84000000 INFO @ Fri, 05 Jul 2019 09:38:54: 72000000 INFO @ Fri, 05 Jul 2019 09:39:01: 86000000 INFO @ Fri, 05 Jul 2019 09:39:01: 85000000 INFO @ Fri, 05 Jul 2019 09:39:02: 73000000 INFO @ Fri, 05 Jul 2019 09:39:08: 87000000 INFO @ Fri, 05 Jul 2019 09:39:08: 86000000 INFO @ Fri, 05 Jul 2019 09:39:10: 74000000 INFO @ Fri, 05 Jul 2019 09:39:15: 87000000 INFO @ Fri, 05 Jul 2019 09:39:15: 88000000 INFO @ Fri, 05 Jul 2019 09:39:19: 75000000 INFO @ Fri, 05 Jul 2019 09:39:22: 89000000 INFO @ Fri, 05 Jul 2019 09:39:22: 88000000 INFO @ Fri, 05 Jul 2019 09:39:27: 76000000 INFO @ Fri, 05 Jul 2019 09:39:29: 90000000 INFO @ Fri, 05 Jul 2019 09:39:29: 89000000 INFO @ Fri, 05 Jul 2019 09:39:35: 77000000 INFO @ Fri, 05 Jul 2019 09:39:36: 91000000 INFO @ Fri, 05 Jul 2019 09:39:36: 90000000 INFO @ Fri, 05 Jul 2019 09:39:43: 91000000 INFO @ Fri, 05 Jul 2019 09:39:43: 92000000 INFO @ Fri, 05 Jul 2019 09:39:43: 78000000 INFO @ Fri, 05 Jul 2019 09:39:50: 93000000 INFO @ Fri, 05 Jul 2019 09:39:50: 92000000 INFO @ Fri, 05 Jul 2019 09:39:51: 79000000 INFO @ Fri, 05 Jul 2019 09:39:56: 94000000 INFO @ Fri, 05 Jul 2019 09:39:57: 93000000 INFO @ Fri, 05 Jul 2019 09:40:00: 80000000 INFO @ Fri, 05 Jul 2019 09:40:03: 95000000 INFO @ Fri, 05 Jul 2019 09:40:04: 94000000 INFO @ Fri, 05 Jul 2019 09:40:08: 81000000 INFO @ Fri, 05 Jul 2019 09:40:10: 96000000 INFO @ Fri, 05 Jul 2019 09:40:10: 95000000 INFO @ Fri, 05 Jul 2019 09:40:16: 82000000 INFO @ Fri, 05 Jul 2019 09:40:17: 97000000 INFO @ Fri, 05 Jul 2019 09:40:17: 96000000 INFO @ Fri, 05 Jul 2019 09:40:24: 98000000 INFO @ Fri, 05 Jul 2019 09:40:24: 97000000 INFO @ Fri, 05 Jul 2019 09:40:24: 83000000 INFO @ Fri, 05 Jul 2019 09:40:31: 99000000 INFO @ Fri, 05 Jul 2019 09:40:31: 98000000 INFO @ Fri, 05 Jul 2019 09:40:32: 84000000 INFO @ Fri, 05 Jul 2019 09:40:38: 100000000 INFO @ Fri, 05 Jul 2019 09:40:38: 99000000 INFO @ Fri, 05 Jul 2019 09:40:41: 85000000 INFO @ Fri, 05 Jul 2019 09:40:45: 101000000 INFO @ Fri, 05 Jul 2019 09:40:45: 100000000 INFO @ Fri, 05 Jul 2019 09:40:49: 86000000 INFO @ Fri, 05 Jul 2019 09:40:50: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:40:50: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:40:50: #1 total tags in treatment: 101496200 INFO @ Fri, 05 Jul 2019 09:40:50: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:40:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:40:52: #1 tags after filtering in treatment: 101496161 INFO @ Fri, 05 Jul 2019 09:40:52: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:40:52: #1 finished! INFO @ Fri, 05 Jul 2019 09:40:52: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:40:52: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:40:52: 101000000 INFO @ Fri, 05 Jul 2019 09:40:57: 87000000 INFO @ Fri, 05 Jul 2019 09:40:57: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:40:57: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:40:57: #1 total tags in treatment: 101496200 INFO @ Fri, 05 Jul 2019 09:40:57: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:40:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:40:59: #1 tags after filtering in treatment: 101496161 INFO @ Fri, 05 Jul 2019 09:40:59: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:40:59: #1 finished! INFO @ Fri, 05 Jul 2019 09:40:59: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:40:59: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:41:03: #2 number of paired peaks: 10249 INFO @ Fri, 05 Jul 2019 09:41:03: start model_add_line... INFO @ Fri, 05 Jul 2019 09:41:04: start X-correlation... INFO @ Fri, 05 Jul 2019 09:41:04: end of X-cor INFO @ Fri, 05 Jul 2019 09:41:04: #2 finished! INFO @ Fri, 05 Jul 2019 09:41:04: #2 predicted fragment length is 121 bps INFO @ Fri, 05 Jul 2019 09:41:04: #2 alternative fragment length(s) may be 2,121 bps INFO @ Fri, 05 Jul 2019 09:41:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.20_model.r INFO @ Fri, 05 Jul 2019 09:41:04: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:41:04: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:41:05: 88000000 INFO @ Fri, 05 Jul 2019 09:41:10: #2 number of paired peaks: 10249 INFO @ Fri, 05 Jul 2019 09:41:10: start model_add_line... INFO @ Fri, 05 Jul 2019 09:41:11: start X-correlation... INFO @ Fri, 05 Jul 2019 09:41:11: end of X-cor INFO @ Fri, 05 Jul 2019 09:41:11: #2 finished! INFO @ Fri, 05 Jul 2019 09:41:11: #2 predicted fragment length is 121 bps INFO @ Fri, 05 Jul 2019 09:41:11: #2 alternative fragment length(s) may be 2,121 bps INFO @ Fri, 05 Jul 2019 09:41:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.10_model.r INFO @ Fri, 05 Jul 2019 09:41:11: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:41:11: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:41:13: 89000000 INFO @ Fri, 05 Jul 2019 09:41:22: 90000000 INFO @ Fri, 05 Jul 2019 09:41:30: 91000000 INFO @ Fri, 05 Jul 2019 09:41:38: 92000000 INFO @ Fri, 05 Jul 2019 09:41:46: 93000000 INFO @ Fri, 05 Jul 2019 09:41:55: 94000000 INFO @ Fri, 05 Jul 2019 09:42:03: 95000000 INFO @ Fri, 05 Jul 2019 09:42:11: 96000000 INFO @ Fri, 05 Jul 2019 09:42:19: 97000000 INFO @ Fri, 05 Jul 2019 09:42:27: 98000000 INFO @ Fri, 05 Jul 2019 09:42:36: 99000000 INFO @ Fri, 05 Jul 2019 09:42:44: 100000000 INFO @ Fri, 05 Jul 2019 09:42:52: 101000000 INFO @ Fri, 05 Jul 2019 09:42:57: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 09:42:57: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 09:42:57: #1 total tags in treatment: 101496200 INFO @ Fri, 05 Jul 2019 09:42:57: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 09:42:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 09:43:00: #1 tags after filtering in treatment: 101496161 INFO @ Fri, 05 Jul 2019 09:43:00: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 09:43:00: #1 finished! INFO @ Fri, 05 Jul 2019 09:43:00: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 09:43:00: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 09:43:10: #2 number of paired peaks: 10249 INFO @ Fri, 05 Jul 2019 09:43:10: start model_add_line... INFO @ Fri, 05 Jul 2019 09:43:11: start X-correlation... INFO @ Fri, 05 Jul 2019 09:43:11: end of X-cor INFO @ Fri, 05 Jul 2019 09:43:11: #2 finished! INFO @ Fri, 05 Jul 2019 09:43:11: #2 predicted fragment length is 121 bps INFO @ Fri, 05 Jul 2019 09:43:11: #2 alternative fragment length(s) may be 2,121 bps INFO @ Fri, 05 Jul 2019 09:43:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.05_model.r INFO @ Fri, 05 Jul 2019 09:43:11: #3 Call peaks... INFO @ Fri, 05 Jul 2019 09:43:11: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 09:46:15: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:46:22: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:48:17: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 09:48:54: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.20_peaks.xls INFO @ Fri, 05 Jul 2019 09:48:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:48:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.20_summits.bed INFO @ Fri, 05 Jul 2019 09:48:54: Done! pass1 - making usageList (39 chroms): 2 millis pass2 - checking and writing primary data (527 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:48:59: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.10_peaks.xls INFO @ Fri, 05 Jul 2019 09:48:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:48:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.10_summits.bed INFO @ Fri, 05 Jul 2019 09:49:00: Done! pass1 - making usageList (61 chroms): 2 millis pass2 - checking and writing primary data (1824 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 09:50:49: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.05_peaks.xls INFO @ Fri, 05 Jul 2019 09:50:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 09:50:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101942/ERX101942.05_summits.bed INFO @ Fri, 05 Jul 2019 09:50:50: Done! pass1 - making usageList (109 chroms): 2 millis pass2 - checking and writing primary data (7305 records, 4 fields): 1179 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。