Job ID = 2001574 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T20:18:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:19:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:32:20 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:54:54 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T21:18:54 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T22:12:39 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 195,776,268 reads read : 195,776,268 reads written : 195,776,268 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 02:58:12 195776268 reads; of these: 195776268 (100.00%) were unpaired; of these: 5542631 (2.83%) aligned 0 times 138689667 (70.84%) aligned exactly 1 time 51543970 (26.33%) aligned >1 times 97.17% overall alignment rate Time searching: 02:58:16 Overall time: 02:58:16 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 80 files... [bam_rmdupse_core] 30237660 / 190233637 = 0.1590 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 11:17:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 11:17:13: #1 read tag files... INFO @ Fri, 05 Jul 2019 11:17:13: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 11:17:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 11:17:13: #1 read tag files... INFO @ Fri, 05 Jul 2019 11:17:13: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 11:17:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 11:17:14: #1 read tag files... INFO @ Fri, 05 Jul 2019 11:17:14: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 11:17:22: 1000000 INFO @ Fri, 05 Jul 2019 11:17:22: 1000000 INFO @ Fri, 05 Jul 2019 11:17:22: 1000000 INFO @ Fri, 05 Jul 2019 11:17:31: 2000000 INFO @ Fri, 05 Jul 2019 11:17:31: 2000000 INFO @ Fri, 05 Jul 2019 11:17:31: 2000000 INFO @ Fri, 05 Jul 2019 11:17:39: 3000000 INFO @ Fri, 05 Jul 2019 11:17:41: 3000000 INFO @ Fri, 05 Jul 2019 11:17:41: 3000000 INFO @ Fri, 05 Jul 2019 11:17:47: 4000000 INFO @ Fri, 05 Jul 2019 11:17:50: 4000000 INFO @ Fri, 05 Jul 2019 11:17:50: 4000000 INFO @ Fri, 05 Jul 2019 11:17:55: 5000000 INFO @ Fri, 05 Jul 2019 11:17:59: 5000000 INFO @ Fri, 05 Jul 2019 11:18:00: 5000000 INFO @ Fri, 05 Jul 2019 11:18:03: 6000000 INFO @ Fri, 05 Jul 2019 11:18:08: 6000000 INFO @ Fri, 05 Jul 2019 11:18:08: 6000000 INFO @ Fri, 05 Jul 2019 11:18:11: 7000000 INFO @ Fri, 05 Jul 2019 11:18:17: 7000000 INFO @ Fri, 05 Jul 2019 11:18:17: 7000000 INFO @ Fri, 05 Jul 2019 11:18:19: 8000000 INFO @ Fri, 05 Jul 2019 11:18:26: 8000000 INFO @ Fri, 05 Jul 2019 11:18:26: 8000000 INFO @ Fri, 05 Jul 2019 11:18:26: 9000000 INFO @ Fri, 05 Jul 2019 11:18:34: 9000000 INFO @ Fri, 05 Jul 2019 11:18:34: 9000000 INFO @ Fri, 05 Jul 2019 11:18:34: 10000000 INFO @ Fri, 05 Jul 2019 11:18:42: 11000000 INFO @ Fri, 05 Jul 2019 11:18:43: 10000000 INFO @ Fri, 05 Jul 2019 11:18:43: 10000000 INFO @ Fri, 05 Jul 2019 11:18:50: 12000000 INFO @ Fri, 05 Jul 2019 11:18:51: 11000000 INFO @ Fri, 05 Jul 2019 11:18:51: 11000000 INFO @ Fri, 05 Jul 2019 11:18:58: 13000000 INFO @ Fri, 05 Jul 2019 11:19:00: 12000000 INFO @ Fri, 05 Jul 2019 11:19:00: 12000000 INFO @ Fri, 05 Jul 2019 11:19:06: 14000000 INFO @ Fri, 05 Jul 2019 11:19:09: 13000000 INFO @ Fri, 05 Jul 2019 11:19:09: 13000000 INFO @ Fri, 05 Jul 2019 11:19:14: 15000000 INFO @ Fri, 05 Jul 2019 11:19:17: 14000000 INFO @ Fri, 05 Jul 2019 11:19:17: 14000000 INFO @ Fri, 05 Jul 2019 11:19:22: 16000000 INFO @ Fri, 05 Jul 2019 11:19:25: 15000000 INFO @ Fri, 05 Jul 2019 11:19:25: 15000000 INFO @ Fri, 05 Jul 2019 11:19:30: 17000000 INFO @ Fri, 05 Jul 2019 11:19:34: 16000000 INFO @ Fri, 05 Jul 2019 11:19:34: 16000000 INFO @ Fri, 05 Jul 2019 11:19:38: 18000000 INFO @ Fri, 05 Jul 2019 11:19:42: 17000000 INFO @ Fri, 05 Jul 2019 11:19:42: 17000000 INFO @ Fri, 05 Jul 2019 11:19:46: 19000000 INFO @ Fri, 05 Jul 2019 11:19:51: 18000000 INFO @ Fri, 05 Jul 2019 11:19:51: 18000000 INFO @ Fri, 05 Jul 2019 11:19:53: 20000000 INFO @ Fri, 05 Jul 2019 11:19:59: 19000000 INFO @ Fri, 05 Jul 2019 11:19:59: 19000000 INFO @ Fri, 05 Jul 2019 11:20:01: 21000000 INFO @ Fri, 05 Jul 2019 11:20:07: 20000000 INFO @ Fri, 05 Jul 2019 11:20:07: 20000000 INFO @ Fri, 05 Jul 2019 11:20:09: 22000000 INFO @ Fri, 05 Jul 2019 11:20:16: 21000000 INFO @ Fri, 05 Jul 2019 11:20:16: 21000000 INFO @ Fri, 05 Jul 2019 11:20:17: 23000000 INFO @ Fri, 05 Jul 2019 11:20:24: 22000000 INFO @ Fri, 05 Jul 2019 11:20:24: 22000000 INFO @ Fri, 05 Jul 2019 11:20:25: 24000000 INFO @ Fri, 05 Jul 2019 11:20:32: 25000000 INFO @ Fri, 05 Jul 2019 11:20:33: 23000000 INFO @ Fri, 05 Jul 2019 11:20:33: 23000000 INFO @ Fri, 05 Jul 2019 11:20:40: 26000000 INFO @ Fri, 05 Jul 2019 11:20:41: 24000000 INFO @ Fri, 05 Jul 2019 11:20:41: 24000000 INFO @ Fri, 05 Jul 2019 11:20:48: 27000000 INFO @ Fri, 05 Jul 2019 11:20:50: 25000000 INFO @ Fri, 05 Jul 2019 11:20:50: 25000000 INFO @ Fri, 05 Jul 2019 11:20:56: 28000000 INFO @ Fri, 05 Jul 2019 11:20:58: 26000000 INFO @ Fri, 05 Jul 2019 11:20:58: 26000000 INFO @ Fri, 05 Jul 2019 11:21:04: 29000000 INFO @ Fri, 05 Jul 2019 11:21:07: 27000000 INFO @ Fri, 05 Jul 2019 11:21:07: 27000000 INFO @ Fri, 05 Jul 2019 11:21:11: 30000000 INFO @ Fri, 05 Jul 2019 11:21:15: 28000000 INFO @ Fri, 05 Jul 2019 11:21:15: 28000000 INFO @ Fri, 05 Jul 2019 11:21:19: 31000000 INFO @ Fri, 05 Jul 2019 11:21:23: 29000000 INFO @ Fri, 05 Jul 2019 11:21:23: 29000000 INFO @ Fri, 05 Jul 2019 11:21:27: 32000000 INFO @ Fri, 05 Jul 2019 11:21:37: 33000000 INFO @ Fri, 05 Jul 2019 11:21:37: 30000000 INFO @ Fri, 05 Jul 2019 11:21:37: 30000000 INFO @ Fri, 05 Jul 2019 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11:26:12: 61000000 INFO @ Fri, 05 Jul 2019 11:26:14: 60000000 INFO @ Fri, 05 Jul 2019 11:26:19: 68000000 INFO @ Fri, 05 Jul 2019 11:26:21: 62000000 INFO @ Fri, 05 Jul 2019 11:26:23: 61000000 INFO @ Fri, 05 Jul 2019 11:26:27: 69000000 INFO @ Fri, 05 Jul 2019 11:26:29: 63000000 INFO @ Fri, 05 Jul 2019 11:26:31: 62000000 INFO @ Fri, 05 Jul 2019 11:26:35: 70000000 INFO @ Fri, 05 Jul 2019 11:26:38: 64000000 INFO @ Fri, 05 Jul 2019 11:26:40: 63000000 INFO @ Fri, 05 Jul 2019 11:26:43: 71000000 INFO @ Fri, 05 Jul 2019 11:26:47: 65000000 INFO @ Fri, 05 Jul 2019 11:26:49: 64000000 INFO @ Fri, 05 Jul 2019 11:26:53: 72000000 INFO @ Fri, 05 Jul 2019 11:26:58: 66000000 INFO @ Fri, 05 Jul 2019 11:26:59: 65000000 INFO @ Fri, 05 Jul 2019 11:27:03: 73000000 INFO @ Fri, 05 Jul 2019 11:27:06: 67000000 INFO @ Fri, 05 Jul 2019 11:27:08: 66000000 INFO @ Fri, 05 Jul 2019 11:27:11: 74000000 INFO @ Fri, 05 Jul 2019 11:27:14: 68000000 INFO @ Fri, 05 Jul 2019 11:27:17: 67000000 INFO @ Fri, 05 Jul 2019 11:27:19: 75000000 INFO @ Fri, 05 Jul 2019 11:27:23: 69000000 INFO @ Fri, 05 Jul 2019 11:27:25: 68000000 INFO @ Fri, 05 Jul 2019 11:27:27: 76000000 INFO @ Fri, 05 Jul 2019 11:27:31: 70000000 INFO @ Fri, 05 Jul 2019 11:27:34: 69000000 INFO @ Fri, 05 Jul 2019 11:27:36: 77000000 INFO @ Fri, 05 Jul 2019 11:27:39: 71000000 INFO @ Fri, 05 Jul 2019 11:27:43: 70000000 INFO @ Fri, 05 Jul 2019 11:27:44: 78000000 INFO @ Fri, 05 Jul 2019 11:27:47: 72000000 INFO @ Fri, 05 Jul 2019 11:27:51: 71000000 INFO @ Fri, 05 Jul 2019 11:27:51: 79000000 INFO @ Fri, 05 Jul 2019 11:27:56: 73000000 INFO @ Fri, 05 Jul 2019 11:28:00: 80000000 INFO @ Fri, 05 Jul 2019 11:28:00: 72000000 INFO @ Fri, 05 Jul 2019 11:28:06: 74000000 INFO @ Fri, 05 Jul 2019 11:28:08: 81000000 INFO @ Fri, 05 Jul 2019 11:28:09: 73000000 INFO @ Fri, 05 Jul 2019 11:28:14: 75000000 INFO @ Fri, 05 Jul 2019 11:28:16: 82000000 INFO @ Fri, 05 Jul 2019 11:28:17: 74000000 INFO @ Fri, 05 Jul 2019 11:28:23: 76000000 INFO @ Fri, 05 Jul 2019 11:28:24: 83000000 INFO @ Fri, 05 Jul 2019 11:28:26: 75000000 INFO @ Fri, 05 Jul 2019 11:28:32: 84000000 INFO @ Fri, 05 Jul 2019 11:28:32: 77000000 INFO @ Fri, 05 Jul 2019 11:28:35: 76000000 INFO @ Fri, 05 Jul 2019 11:28:40: 85000000 INFO @ Fri, 05 Jul 2019 11:28:41: 78000000 INFO @ Fri, 05 Jul 2019 11:28:44: 77000000 INFO @ Fri, 05 Jul 2019 11:28:47: 86000000 INFO @ Fri, 05 Jul 2019 11:28:50: 79000000 INFO @ Fri, 05 Jul 2019 11:28:52: 78000000 INFO @ Fri, 05 Jul 2019 11:28:55: 87000000 INFO @ Fri, 05 Jul 2019 11:28:58: 80000000 INFO @ Fri, 05 Jul 2019 11:29:01: 79000000 INFO @ Fri, 05 Jul 2019 11:29:03: 88000000 INFO @ Fri, 05 Jul 2019 11:29:07: 81000000 INFO @ Fri, 05 Jul 2019 11:29:09: 80000000 INFO @ Fri, 05 Jul 2019 11:29:11: 89000000 INFO @ Fri, 05 Jul 2019 11:29:16: 82000000 INFO @ Fri, 05 Jul 2019 11:29:18: 81000000 INFO @ Fri, 05 Jul 2019 11:29:19: 90000000 INFO @ Fri, 05 Jul 2019 11:29:25: 83000000 INFO @ Fri, 05 Jul 2019 11:29:26: 82000000 INFO @ Fri, 05 Jul 2019 11:29:27: 91000000 INFO @ Fri, 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11:30:36: 90000000 INFO @ Fri, 05 Jul 2019 11:30:37: 100000000 INFO @ Fri, 05 Jul 2019 11:30:44: 91000000 INFO @ Fri, 05 Jul 2019 11:30:45: 92000000 INFO @ Fri, 05 Jul 2019 11:30:45: 101000000 INFO @ Fri, 05 Jul 2019 11:30:53: 92000000 INFO @ Fri, 05 Jul 2019 11:30:53: 102000000 INFO @ Fri, 05 Jul 2019 11:30:54: 93000000 INFO @ Fri, 05 Jul 2019 11:31:00: 93000000 INFO @ Fri, 05 Jul 2019 11:31:01: 103000000 INFO @ Fri, 05 Jul 2019 11:31:02: 94000000 INFO @ Fri, 05 Jul 2019 11:31:09: 94000000 INFO @ Fri, 05 Jul 2019 11:31:10: 104000000 INFO @ Fri, 05 Jul 2019 11:31:11: 95000000 INFO @ Fri, 05 Jul 2019 11:31:17: 95000000 INFO @ Fri, 05 Jul 2019 11:31:18: 105000000 INFO @ Fri, 05 Jul 2019 11:31:19: 96000000 INFO @ Fri, 05 Jul 2019 11:31:26: 96000000 INFO @ Fri, 05 Jul 2019 11:31:27: 106000000 INFO @ Fri, 05 Jul 2019 11:31:28: 97000000 INFO @ Fri, 05 Jul 2019 11:31:34: 97000000 INFO @ Fri, 05 Jul 2019 11:31:35: 107000000 INFO @ Fri, 05 Jul 2019 11:31:36: 98000000 INFO @ Fri, 05 Jul 2019 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INFO @ Fri, 05 Jul 2019 11:33:53: 123000000 INFO @ Fri, 05 Jul 2019 11:33:53: 114000000 INFO @ Fri, 05 Jul 2019 11:34:00: 114000000 INFO @ Fri, 05 Jul 2019 11:34:01: 124000000 INFO @ Fri, 05 Jul 2019 11:34:02: 115000000 INFO @ Fri, 05 Jul 2019 11:34:09: 115000000 INFO @ Fri, 05 Jul 2019 11:34:10: 125000000 INFO @ Fri, 05 Jul 2019 11:34:11: 116000000 INFO @ Fri, 05 Jul 2019 11:34:17: 116000000 INFO @ Fri, 05 Jul 2019 11:34:19: 126000000 INFO @ Fri, 05 Jul 2019 11:34:19: 117000000 INFO @ Fri, 05 Jul 2019 11:34:26: 117000000 INFO @ Fri, 05 Jul 2019 11:34:27: 127000000 INFO @ Fri, 05 Jul 2019 11:34:28: 118000000 INFO @ Fri, 05 Jul 2019 11:34:35: 118000000 INFO @ Fri, 05 Jul 2019 11:34:36: 128000000 INFO @ Fri, 05 Jul 2019 11:34:37: 119000000 INFO @ Fri, 05 Jul 2019 11:34:43: 119000000 INFO @ Fri, 05 Jul 2019 11:34:44: 129000000 INFO @ Fri, 05 Jul 2019 11:34:46: 120000000 INFO @ Fri, 05 Jul 2019 11:34:52: 120000000 INFO @ Fri, 05 Jul 2019 11:34:53: 130000000 INFO @ Fri, 05 Jul 2019 11:34:54: 121000000 INFO @ Fri, 05 Jul 2019 11:35:01: 121000000 INFO @ Fri, 05 Jul 2019 11:35:02: 131000000 INFO @ Fri, 05 Jul 2019 11:35:03: 122000000 INFO @ Fri, 05 Jul 2019 11:35:10: 122000000 INFO @ Fri, 05 Jul 2019 11:35:10: 132000000 INFO @ Fri, 05 Jul 2019 11:35:12: 123000000 INFO @ Fri, 05 Jul 2019 11:35:18: 123000000 INFO @ Fri, 05 Jul 2019 11:35:19: 133000000 INFO @ Fri, 05 Jul 2019 11:35:20: 124000000 INFO @ Fri, 05 Jul 2019 11:35:27: 124000000 INFO @ Fri, 05 Jul 2019 11:35:27: 134000000 INFO @ Fri, 05 Jul 2019 11:35:29: 125000000 INFO @ Fri, 05 Jul 2019 11:35:36: 125000000 INFO @ Fri, 05 Jul 2019 11:35:36: 135000000 INFO @ Fri, 05 Jul 2019 11:35:38: 126000000 INFO @ Fri, 05 Jul 2019 11:35:44: 126000000 INFO @ Fri, 05 Jul 2019 11:35:45: 136000000 INFO @ Fri, 05 Jul 2019 11:35:46: 127000000 INFO @ Fri, 05 Jul 2019 11:35:53: 127000000 INFO @ Fri, 05 Jul 2019 11:35:54: 137000000 INFO @ Fri, 05 Jul 2019 11:35:55: 128000000 INFO @ Fri, 05 Jul 2019 11:36:02: 128000000 INFO @ Fri, 05 Jul 2019 11:36:02: 138000000 INFO @ Fri, 05 Jul 2019 11:36:04: 129000000 INFO @ Fri, 05 Jul 2019 11:36:11: 129000000 INFO @ Fri, 05 Jul 2019 11:36:11: 139000000 INFO @ Fri, 05 Jul 2019 11:36:12: 130000000 INFO @ Fri, 05 Jul 2019 11:36:19: 130000000 INFO @ Fri, 05 Jul 2019 11:36:20: 140000000 INFO @ Fri, 05 Jul 2019 11:36:21: 131000000 INFO @ Fri, 05 Jul 2019 11:36:27: 131000000 INFO @ Fri, 05 Jul 2019 11:36:28: 141000000 INFO @ Fri, 05 Jul 2019 11:36:30: 132000000 INFO @ Fri, 05 Jul 2019 11:36:35: 132000000 INFO @ Fri, 05 Jul 2019 11:36:36: 142000000 INFO @ Fri, 05 Jul 2019 11:36:38: 133000000 INFO @ Fri, 05 Jul 2019 11:36:43: 133000000 INFO @ Fri, 05 Jul 2019 11:36:44: 143000000 INFO @ Fri, 05 Jul 2019 11:36:47: 134000000 INFO @ Fri, 05 Jul 2019 11:36:51: 134000000 INFO @ Fri, 05 Jul 2019 11:36:53: 144000000 INFO @ Fri, 05 Jul 2019 11:36:56: 135000000 INFO @ Fri, 05 Jul 2019 11:36:59: 135000000 INFO @ Fri, 05 Jul 2019 11:37:01: 145000000 INFO @ Fri, 05 Jul 2019 11:37:04: 136000000 INFO @ Fri, 05 Jul 2019 11:37:08: 136000000 INFO @ Fri, 05 Jul 2019 11:37:10: 146000000 INFO @ Fri, 05 Jul 2019 11:37:13: 137000000 INFO @ Fri, 05 Jul 2019 11:37:16: 137000000 INFO @ Fri, 05 Jul 2019 11:37:19: 147000000 INFO @ Fri, 05 Jul 2019 11:37:22: 138000000 INFO @ Fri, 05 Jul 2019 11:37:25: 138000000 INFO @ Fri, 05 Jul 2019 11:37:28: 148000000 INFO @ Fri, 05 Jul 2019 11:37:30: 139000000 INFO @ Fri, 05 Jul 2019 11:37:34: 139000000 INFO @ Fri, 05 Jul 2019 11:37:36: 149000000 INFO @ Fri, 05 Jul 2019 11:37:39: 140000000 INFO @ Fri, 05 Jul 2019 11:37:43: 140000000 INFO @ Fri, 05 Jul 2019 11:37:45: 150000000 INFO @ Fri, 05 Jul 2019 11:37:48: 141000000 INFO @ Fri, 05 Jul 2019 11:37:52: 141000000 INFO @ Fri, 05 Jul 2019 11:37:54: 151000000 INFO @ Fri, 05 Jul 2019 11:37:57: 142000000 INFO @ Fri, 05 Jul 2019 11:38:01: 142000000 INFO @ Fri, 05 Jul 2019 11:38:03: 152000000 INFO @ Fri, 05 Jul 2019 11:38:06: 143000000 INFO @ Fri, 05 Jul 2019 11:38:10: 143000000 INFO @ Fri, 05 Jul 2019 11:38:12: 153000000 INFO @ Fri, 05 Jul 2019 11:38:15: 144000000 INFO @ Fri, 05 Jul 2019 11:38:19: 144000000 INFO @ Fri, 05 Jul 2019 11:38:22: 154000000 INFO @ Fri, 05 Jul 2019 11:38:23: 145000000 INFO @ Fri, 05 Jul 2019 11:38:28: 145000000 INFO @ Fri, 05 Jul 2019 11:38:31: 155000000 INFO @ Fri, 05 Jul 2019 11:38:32: 146000000 INFO @ Fri, 05 Jul 2019 11:38:38: 146000000 INFO @ Fri, 05 Jul 2019 11:38:40: 156000000 INFO @ Fri, 05 Jul 2019 11:38:41: 147000000 INFO @ Fri, 05 Jul 2019 11:38:46: 147000000 INFO @ Fri, 05 Jul 2019 11:38:49: 157000000 INFO @ Fri, 05 Jul 2019 11:38:50: 148000000 INFO @ Fri, 05 Jul 2019 11:38:55: 148000000 INFO @ Fri, 05 Jul 2019 11:38:58: 158000000 INFO @ Fri, 05 Jul 2019 11:38:59: 149000000 INFO @ Fri, 05 Jul 2019 11:39:04: 149000000 INFO @ Fri, 05 Jul 2019 11:39:07: 159000000 INFO @ Fri, 05 Jul 2019 11:39:08: 150000000 INFO @ Fri, 05 Jul 2019 11:39:13: 150000000 INFO @ Fri, 05 Jul 2019 11:39:17: 151000000 INFO @ Fri, 05 Jul 2019 11:39:18: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 11:39:18: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 11:39:18: #1 total tags in treatment: 159995977 INFO @ Fri, 05 Jul 2019 11:39:18: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 11:39:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 11:39:21: 151000000 INFO @ Fri, 05 Jul 2019 11:39:22: #1 tags after filtering in treatment: 159995948 INFO @ Fri, 05 Jul 2019 11:39:22: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 11:39:22: #1 finished! INFO @ Fri, 05 Jul 2019 11:39:22: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 11:39:22: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 11:39:25: 152000000 INFO @ Fri, 05 Jul 2019 11:39:29: 152000000 INFO @ Fri, 05 Jul 2019 11:39:34: 153000000 INFO @ Fri, 05 Jul 2019 11:39:36: 153000000 INFO @ Fri, 05 Jul 2019 11:39:37: #2 number of paired peaks: 7701 INFO @ Fri, 05 Jul 2019 11:39:37: start model_add_line... INFO @ Fri, 05 Jul 2019 11:39:38: start X-correlation... INFO @ Fri, 05 Jul 2019 11:39:38: end of X-cor INFO @ Fri, 05 Jul 2019 11:39:38: #2 finished! INFO @ Fri, 05 Jul 2019 11:39:38: #2 predicted fragment length is 112 bps INFO @ Fri, 05 Jul 2019 11:39:38: #2 alternative fragment length(s) may be 3,112 bps INFO @ Fri, 05 Jul 2019 11:39:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.20_model.r INFO @ Fri, 05 Jul 2019 11:39:38: #3 Call peaks... INFO @ Fri, 05 Jul 2019 11:39:38: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 11:39:43: 154000000 INFO @ Fri, 05 Jul 2019 11:39:45: 154000000 INFO @ Fri, 05 Jul 2019 11:39:51: 155000000 INFO @ Fri, 05 Jul 2019 11:39:52: 155000000 INFO @ Fri, 05 Jul 2019 11:40:00: 156000000 INFO @ Fri, 05 Jul 2019 11:40:00: 156000000 INFO @ Fri, 05 Jul 2019 11:40:08: 157000000 INFO @ Fri, 05 Jul 2019 11:40:09: 157000000 INFO @ Fri, 05 Jul 2019 11:40:17: 158000000 INFO @ Fri, 05 Jul 2019 11:40:17: 158000000 INFO @ Fri, 05 Jul 2019 11:40:25: 159000000 INFO @ Fri, 05 Jul 2019 11:40:26: 159000000 INFO @ Fri, 05 Jul 2019 11:40:35: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 11:40:35: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 11:40:35: #1 total tags in treatment: 159995977 INFO @ Fri, 05 Jul 2019 11:40:35: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 11:40:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 11:40:37: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 11:40:37: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 11:40:37: #1 total tags in treatment: 159995977 INFO @ Fri, 05 Jul 2019 11:40:37: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 11:40:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 11:40:38: #1 tags after filtering in treatment: 159995948 INFO @ Fri, 05 Jul 2019 11:40:38: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 11:40:38: #1 finished! INFO @ Fri, 05 Jul 2019 11:40:38: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 11:40:38: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 11:40:40: #1 tags after filtering in treatment: 159995948 INFO @ Fri, 05 Jul 2019 11:40:40: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 11:40:40: #1 finished! INFO @ Fri, 05 Jul 2019 11:40:40: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 11:40:40: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 11:40:53: #2 number of paired peaks: 7701 INFO @ Fri, 05 Jul 2019 11:40:53: start model_add_line... INFO @ Fri, 05 Jul 2019 11:40:55: start X-correlation... INFO @ Fri, 05 Jul 2019 11:40:55: end of X-cor INFO @ Fri, 05 Jul 2019 11:40:55: #2 finished! INFO @ Fri, 05 Jul 2019 11:40:55: #2 predicted fragment length is 112 bps INFO @ Fri, 05 Jul 2019 11:40:55: #2 alternative fragment length(s) may be 3,112 bps INFO @ Fri, 05 Jul 2019 11:40:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.05_model.r INFO @ Fri, 05 Jul 2019 11:40:55: #3 Call peaks... INFO @ Fri, 05 Jul 2019 11:40:55: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 11:40:55: #2 number of paired peaks: 7701 INFO @ Fri, 05 Jul 2019 11:40:55: start model_add_line... INFO @ Fri, 05 Jul 2019 11:40:57: start X-correlation... INFO @ Fri, 05 Jul 2019 11:40:57: end of X-cor INFO @ Fri, 05 Jul 2019 11:40:57: #2 finished! INFO @ Fri, 05 Jul 2019 11:40:57: #2 predicted fragment length is 112 bps INFO @ Fri, 05 Jul 2019 11:40:57: #2 alternative fragment length(s) may be 3,112 bps INFO @ Fri, 05 Jul 2019 11:40:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.10_model.r INFO @ Fri, 05 Jul 2019 11:40:57: #3 Call peaks... INFO @ Fri, 05 Jul 2019 11:40:57: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 11:47:47: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 11:48:59: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 11:48:59: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 11:52:16: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.20_peaks.xls INFO @ Fri, 05 Jul 2019 11:52:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 11:52:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.20_summits.bed INFO @ Fri, 05 Jul 2019 11:52:16: Done! pass1 - making usageList (50 chroms): 2 millis pass2 - checking and writing primary data (950 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 11:53:24: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.05_peaks.xls INFO @ Fri, 05 Jul 2019 11:53:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 11:53:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.05_summits.bed INFO @ Fri, 05 Jul 2019 11:53:25: Done! pass1 - making usageList (157 chroms): 5 millis pass2 - checking and writing primary data (21480 records, 4 fields): 32 millis INFO @ Fri, 05 Jul 2019 11:53:26: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.10_peaks.xls INFO @ Fri, 05 Jul 2019 11:53:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 11:53:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101917/ERX101917.10_summits.bed INFO @ Fri, 05 Jul 2019 11:53:26: Done! pass1 - making usageList (95 chroms): 3 millis pass2 - checking and writing primary data (4929 records, 4 fields): 16 millis CompletedMACS2peakCalling CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。