Job ID = 2001572 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T20:19:39 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:19:39 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:19:39 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:35:55 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 77,765,911 reads read : 77,765,911 reads written : 77,765,911 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:28:41 77765911 reads; of these: 77765911 (100.00%) were unpaired; of these: 1506673 (1.94%) aligned 0 times 59024463 (75.90%) aligned exactly 1 time 17234775 (22.16%) aligned >1 times 98.06% overall alignment rate Time searching: 01:28:44 Overall time: 01:28:44 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 9500012 / 76259238 = 0.1246 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 07:40:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:40:43: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:40:43: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:40:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:40:44: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:40:44: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:40:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:40:45: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:40:45: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:40:56: 1000000 INFO @ Fri, 05 Jul 2019 07:40:56: 1000000 INFO @ Fri, 05 Jul 2019 07:40:57: 1000000 INFO @ Fri, 05 Jul 2019 07:41:07: 2000000 INFO @ Fri, 05 Jul 2019 07:41:09: 2000000 INFO @ Fri, 05 Jul 2019 07:41:09: 2000000 INFO @ Fri, 05 Jul 2019 07:41:17: 3000000 INFO @ Fri, 05 Jul 2019 07:41:21: 3000000 INFO @ Fri, 05 Jul 2019 07:41:22: 3000000 INFO @ Fri, 05 Jul 2019 07:41:28: 4000000 INFO @ Fri, 05 Jul 2019 07:41:33: 4000000 INFO @ Fri, 05 Jul 2019 07:41:34: 4000000 INFO @ Fri, 05 Jul 2019 07:41:38: 5000000 INFO @ Fri, 05 Jul 2019 07:41:45: 5000000 INFO @ Fri, 05 Jul 2019 07:41:47: 5000000 INFO @ Fri, 05 Jul 2019 07:41:48: 6000000 INFO @ Fri, 05 Jul 2019 07:41:57: 6000000 INFO @ Fri, 05 Jul 2019 07:41:58: 7000000 INFO @ Fri, 05 Jul 2019 07:41:59: 6000000 INFO @ Fri, 05 Jul 2019 07:42:09: 8000000 INFO @ Fri, 05 Jul 2019 07:42:09: 7000000 INFO @ Fri, 05 Jul 2019 07:42:12: 7000000 INFO @ Fri, 05 Jul 2019 07:42:19: 9000000 INFO @ Fri, 05 Jul 2019 07:42:22: 8000000 INFO @ Fri, 05 Jul 2019 07:42:24: 8000000 INFO @ Fri, 05 Jul 2019 07:42:29: 10000000 INFO @ Fri, 05 Jul 2019 07:42:34: 9000000 INFO @ Fri, 05 Jul 2019 07:42:36: 9000000 INFO @ Fri, 05 Jul 2019 07:42:40: 11000000 INFO @ Fri, 05 Jul 2019 07:42:47: 10000000 INFO @ Fri, 05 Jul 2019 07:42:47: 10000000 INFO @ Fri, 05 Jul 2019 07:42:51: 12000000 INFO @ Fri, 05 Jul 2019 07:42:59: 11000000 INFO @ Fri, 05 Jul 2019 07:42:59: 11000000 INFO @ Fri, 05 Jul 2019 07:43:02: 13000000 INFO @ Fri, 05 Jul 2019 07:43:11: 12000000 INFO @ Fri, 05 Jul 2019 07:43:12: 12000000 INFO @ Fri, 05 Jul 2019 07:43:12: 14000000 INFO @ Fri, 05 Jul 2019 07:43:23: 15000000 INFO @ Fri, 05 Jul 2019 07:43:24: 13000000 INFO @ Fri, 05 Jul 2019 07:43:24: 13000000 INFO @ Fri, 05 Jul 2019 07:43:34: 16000000 INFO @ Fri, 05 Jul 2019 07:43:36: 14000000 INFO @ Fri, 05 Jul 2019 07:43:36: 14000000 INFO @ Fri, 05 Jul 2019 07:43:46: 17000000 INFO @ Fri, 05 Jul 2019 07:43:48: 15000000 INFO @ Fri, 05 Jul 2019 07:43:49: 15000000 INFO @ Fri, 05 Jul 2019 07:43:57: 18000000 INFO @ Fri, 05 Jul 2019 07:44:00: 16000000 INFO @ Fri, 05 Jul 2019 07:44:02: 16000000 INFO @ Fri, 05 Jul 2019 07:44:07: 19000000 INFO @ Fri, 05 Jul 2019 07:44:13: 17000000 INFO @ Fri, 05 Jul 2019 07:44:14: 17000000 INFO @ Fri, 05 Jul 2019 07:44:17: 20000000 INFO @ Fri, 05 Jul 2019 07:44:24: 18000000 INFO @ Fri, 05 Jul 2019 07:44:27: 18000000 INFO @ Fri, 05 Jul 2019 07:44:28: 21000000 INFO @ Fri, 05 Jul 2019 07:44:37: 19000000 INFO @ Fri, 05 Jul 2019 07:44:39: 22000000 INFO @ Fri, 05 Jul 2019 07:44:41: 19000000 INFO @ Fri, 05 Jul 2019 07:44:49: 20000000 INFO @ Fri, 05 Jul 2019 07:44:49: 23000000 INFO @ Fri, 05 Jul 2019 07:44:53: 20000000 INFO @ Fri, 05 Jul 2019 07:44:59: 24000000 INFO @ Fri, 05 Jul 2019 07:45:00: 21000000 INFO @ Fri, 05 Jul 2019 07:45:05: 21000000 INFO @ Fri, 05 Jul 2019 07:45:09: 25000000 INFO @ Fri, 05 Jul 2019 07:45:12: 22000000 INFO @ Fri, 05 Jul 2019 07:45:18: 22000000 INFO @ Fri, 05 Jul 2019 07:45:19: 26000000 INFO @ Fri, 05 Jul 2019 07:45:23: 23000000 INFO @ Fri, 05 Jul 2019 07:45:30: 27000000 INFO @ Fri, 05 Jul 2019 07:45:31: 23000000 INFO @ Fri, 05 Jul 2019 07:45:35: 24000000 INFO @ Fri, 05 Jul 2019 07:45:40: 28000000 INFO @ Fri, 05 Jul 2019 07:45:42: 24000000 INFO @ Fri, 05 Jul 2019 07:45:46: 25000000 INFO @ Fri, 05 Jul 2019 07:45:51: 29000000 INFO @ Fri, 05 Jul 2019 07:45:54: 25000000 INFO @ Fri, 05 Jul 2019 07:45:58: 26000000 INFO @ Fri, 05 Jul 2019 07:46:02: 30000000 INFO @ Fri, 05 Jul 2019 07:46:06: 26000000 INFO @ Fri, 05 Jul 2019 07:46:09: 27000000 INFO @ Fri, 05 Jul 2019 07:46:13: 31000000 INFO @ Fri, 05 Jul 2019 07:46:18: 27000000 INFO @ Fri, 05 Jul 2019 07:46:20: 28000000 INFO @ Fri, 05 Jul 2019 07:46:23: 32000000 INFO @ Fri, 05 Jul 2019 07:46:29: 28000000 INFO @ Fri, 05 Jul 2019 07:46:32: 29000000 INFO @ Fri, 05 Jul 2019 07:46:34: 33000000 INFO @ Fri, 05 Jul 2019 07:46:41: 29000000 INFO @ Fri, 05 Jul 2019 07:46:43: 30000000 INFO @ Fri, 05 Jul 2019 07:46:44: 34000000 INFO @ Fri, 05 Jul 2019 07:46:53: 30000000 INFO @ Fri, 05 Jul 2019 07:46:54: 35000000 INFO @ Fri, 05 Jul 2019 07:46:54: 31000000 INFO @ Fri, 05 Jul 2019 07:47:04: 36000000 INFO @ Fri, 05 Jul 2019 07:47:05: 31000000 INFO @ Fri, 05 Jul 2019 07:47:06: 32000000 INFO @ Fri, 05 Jul 2019 07:47:13: 37000000 INFO @ Fri, 05 Jul 2019 07:47:16: 32000000 INFO @ Fri, 05 Jul 2019 07:47:17: 33000000 INFO @ Fri, 05 Jul 2019 07:47:23: 38000000 INFO @ Fri, 05 Jul 2019 07:47:28: 34000000 INFO @ Fri, 05 Jul 2019 07:47:28: 33000000 INFO @ Fri, 05 Jul 2019 07:47:34: 39000000 INFO @ Fri, 05 Jul 2019 07:47:39: 35000000 INFO @ Fri, 05 Jul 2019 07:47:40: 34000000 INFO @ Fri, 05 Jul 2019 07:47:44: 40000000 INFO @ Fri, 05 Jul 2019 07:47:50: 36000000 INFO @ Fri, 05 Jul 2019 07:47:51: 35000000 INFO @ Fri, 05 Jul 2019 07:47:54: 41000000 INFO @ Fri, 05 Jul 2019 07:48:01: 37000000 INFO @ Fri, 05 Jul 2019 07:48:02: 36000000 INFO @ Fri, 05 Jul 2019 07:48:04: 42000000 INFO @ Fri, 05 Jul 2019 07:48:12: 38000000 INFO @ Fri, 05 Jul 2019 07:48:13: 37000000 INFO @ Fri, 05 Jul 2019 07:48:14: 43000000 INFO @ Fri, 05 Jul 2019 07:48:23: 39000000 INFO @ Fri, 05 Jul 2019 07:48:24: 44000000 INFO @ Fri, 05 Jul 2019 07:48:24: 38000000 INFO @ Fri, 05 Jul 2019 07:48:33: 45000000 INFO @ Fri, 05 Jul 2019 07:48:34: 40000000 INFO @ Fri, 05 Jul 2019 07:48:34: 39000000 INFO @ Fri, 05 Jul 2019 07:48:43: 46000000 INFO @ Fri, 05 Jul 2019 07:48:45: 41000000 INFO @ Fri, 05 Jul 2019 07:48:45: 40000000 INFO @ Fri, 05 Jul 2019 07:48:54: 47000000 INFO @ Fri, 05 Jul 2019 07:48:56: 41000000 INFO @ Fri, 05 Jul 2019 07:48:56: 42000000 INFO @ Fri, 05 Jul 2019 07:49:04: 48000000 INFO @ Fri, 05 Jul 2019 07:49:07: 42000000 INFO @ Fri, 05 Jul 2019 07:49:07: 43000000 INFO @ Fri, 05 Jul 2019 07:49:14: 49000000 INFO @ Fri, 05 Jul 2019 07:49:17: 43000000 INFO @ Fri, 05 Jul 2019 07:49:18: 44000000 INFO @ Fri, 05 Jul 2019 07:49:24: 50000000 INFO @ Fri, 05 Jul 2019 07:49:28: 44000000 INFO @ Fri, 05 Jul 2019 07:49:29: 45000000 INFO @ Fri, 05 Jul 2019 07:49:33: 51000000 INFO @ Fri, 05 Jul 2019 07:49:39: 45000000 INFO @ Fri, 05 Jul 2019 07:49:39: 46000000 INFO @ Fri, 05 Jul 2019 07:49:43: 52000000 INFO @ Fri, 05 Jul 2019 07:49:50: 46000000 INFO @ Fri, 05 Jul 2019 07:49:50: 47000000 INFO @ Fri, 05 Jul 2019 07:49:53: 53000000 INFO @ Fri, 05 Jul 2019 07:50:01: 47000000 INFO @ Fri, 05 Jul 2019 07:50:02: 48000000 INFO @ Fri, 05 Jul 2019 07:50:03: 54000000 INFO @ Fri, 05 Jul 2019 07:50:12: 48000000 INFO @ Fri, 05 Jul 2019 07:50:12: 55000000 INFO @ Fri, 05 Jul 2019 07:50:13: 49000000 INFO @ Fri, 05 Jul 2019 07:50:22: 56000000 INFO @ Fri, 05 Jul 2019 07:50:23: 49000000 INFO @ Fri, 05 Jul 2019 07:50:24: 50000000 INFO @ Fri, 05 Jul 2019 07:50:32: 57000000 INFO @ Fri, 05 Jul 2019 07:50:34: 50000000 INFO @ Fri, 05 Jul 2019 07:50:36: 51000000 INFO @ Fri, 05 Jul 2019 07:50:41: 58000000 INFO @ Fri, 05 Jul 2019 07:50:44: 51000000 INFO @ Fri, 05 Jul 2019 07:50:47: 52000000 INFO @ Fri, 05 Jul 2019 07:50:51: 59000000 INFO @ Fri, 05 Jul 2019 07:50:55: 52000000 INFO @ Fri, 05 Jul 2019 07:50:57: 53000000 INFO @ Fri, 05 Jul 2019 07:51:01: 60000000 INFO @ Fri, 05 Jul 2019 07:51:05: 53000000 INFO @ Fri, 05 Jul 2019 07:51:08: 54000000 INFO @ Fri, 05 Jul 2019 07:51:11: 61000000 INFO @ Fri, 05 Jul 2019 07:51:16: 54000000 INFO @ Fri, 05 Jul 2019 07:51:19: 55000000 INFO @ Fri, 05 Jul 2019 07:51:21: 62000000 INFO @ Fri, 05 Jul 2019 07:51:26: 55000000 INFO @ Fri, 05 Jul 2019 07:51:29: 56000000 INFO @ Fri, 05 Jul 2019 07:51:30: 63000000 INFO @ Fri, 05 Jul 2019 07:51:37: 56000000 INFO @ Fri, 05 Jul 2019 07:51:40: 64000000 INFO @ Fri, 05 Jul 2019 07:51:40: 57000000 INFO @ Fri, 05 Jul 2019 07:51:48: 57000000 INFO @ Fri, 05 Jul 2019 07:51:50: 65000000 INFO @ Fri, 05 Jul 2019 07:51:51: 58000000 INFO @ Fri, 05 Jul 2019 07:51:59: 58000000 INFO @ Fri, 05 Jul 2019 07:51:59: 66000000 INFO @ Fri, 05 Jul 2019 07:52:01: 59000000 INFO @ Fri, 05 Jul 2019 07:52:07: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:52:07: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:52:07: #1 total tags in treatment: 66759226 INFO @ Fri, 05 Jul 2019 07:52:07: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:52:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:52:09: #1 tags after filtering in treatment: 66759142 INFO @ Fri, 05 Jul 2019 07:52:09: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:52:09: #1 finished! INFO @ Fri, 05 Jul 2019 07:52:09: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:52:09: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:52:09: 59000000 INFO @ Fri, 05 Jul 2019 07:52:12: 60000000 INFO @ Fri, 05 Jul 2019 07:52:18: #2 number of paired peaks: 43315 INFO @ Fri, 05 Jul 2019 07:52:18: start model_add_line... INFO @ Fri, 05 Jul 2019 07:52:19: start X-correlation... INFO @ Fri, 05 Jul 2019 07:52:19: 60000000 INFO @ Fri, 05 Jul 2019 07:52:19: end of X-cor INFO @ Fri, 05 Jul 2019 07:52:19: #2 finished! INFO @ Fri, 05 Jul 2019 07:52:19: #2 predicted fragment length is 142 bps INFO @ Fri, 05 Jul 2019 07:52:19: #2 alternative fragment length(s) may be 142,309,520 bps INFO @ Fri, 05 Jul 2019 07:52:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.10_model.r INFO @ Fri, 05 Jul 2019 07:52:23: 61000000 INFO @ Fri, 05 Jul 2019 07:52:29: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:52:29: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:52:30: 61000000 INFO @ Fri, 05 Jul 2019 07:52:34: 62000000 INFO @ Fri, 05 Jul 2019 07:52:40: 62000000 INFO @ Fri, 05 Jul 2019 07:52:44: 63000000 INFO @ Fri, 05 Jul 2019 07:52:51: 63000000 INFO @ Fri, 05 Jul 2019 07:52:55: 64000000 INFO @ Fri, 05 Jul 2019 07:53:02: 64000000 INFO @ Fri, 05 Jul 2019 07:53:06: 65000000 INFO @ Fri, 05 Jul 2019 07:53:13: 65000000 INFO @ Fri, 05 Jul 2019 07:53:17: 66000000 INFO @ Fri, 05 Jul 2019 07:53:24: 66000000 INFO @ Fri, 05 Jul 2019 07:53:26: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:53:26: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:53:26: #1 total tags in treatment: 66759226 INFO @ Fri, 05 Jul 2019 07:53:26: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:53:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:53:28: #1 tags after filtering in treatment: 66759142 INFO @ Fri, 05 Jul 2019 07:53:28: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:53:28: #1 finished! INFO @ Fri, 05 Jul 2019 07:53:28: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:53:28: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:53:33: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:53:33: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:53:33: #1 total tags in treatment: 66759226 INFO @ Fri, 05 Jul 2019 07:53:33: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:53:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:53:34: #1 tags after filtering in treatment: 66759142 INFO @ Fri, 05 Jul 2019 07:53:34: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:53:34: #1 finished! INFO @ Fri, 05 Jul 2019 07:53:34: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:53:34: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:53:38: #2 number of paired peaks: 43315 INFO @ Fri, 05 Jul 2019 07:53:38: start model_add_line... INFO @ Fri, 05 Jul 2019 07:53:39: start X-correlation... INFO @ Fri, 05 Jul 2019 07:53:39: end of X-cor INFO @ Fri, 05 Jul 2019 07:53:39: #2 finished! INFO @ Fri, 05 Jul 2019 07:53:39: #2 predicted fragment length is 142 bps INFO @ Fri, 05 Jul 2019 07:53:39: #2 alternative fragment length(s) may be 142,309,520 bps INFO @ Fri, 05 Jul 2019 07:53:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.20_model.r INFO @ Fri, 05 Jul 2019 07:53:39: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:53:39: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:53:44: #2 number of paired peaks: 43315 INFO @ Fri, 05 Jul 2019 07:53:44: start model_add_line... INFO @ Fri, 05 Jul 2019 07:53:45: start X-correlation... INFO @ Fri, 05 Jul 2019 07:53:45: end of X-cor INFO @ Fri, 05 Jul 2019 07:53:45: #2 finished! INFO @ Fri, 05 Jul 2019 07:53:45: #2 predicted fragment length is 142 bps INFO @ Fri, 05 Jul 2019 07:53:45: #2 alternative fragment length(s) may be 142,309,520 bps INFO @ Fri, 05 Jul 2019 07:53:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.05_model.r INFO @ Fri, 05 Jul 2019 07:53:45: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:53:45: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:56:21: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:57:20: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:57:37: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:58:31: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.10_peaks.xls INFO @ Fri, 05 Jul 2019 07:58:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:58:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.10_summits.bed INFO @ Fri, 05 Jul 2019 07:58:31: Done! pass1 - making usageList (59 chroms): 3 millis pass2 - checking and writing primary data (2260 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:59:16: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.20_peaks.xls INFO @ Fri, 05 Jul 2019 07:59:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:59:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.20_summits.bed INFO @ Fri, 05 Jul 2019 07:59:16: Done! pass1 - making usageList (36 chroms): 2 millis pass2 - checking and writing primary data (425 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:59:37: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.05_peaks.xls INFO @ Fri, 05 Jul 2019 07:59:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:59:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101915/ERX101915.05_summits.bed INFO @ Fri, 05 Jul 2019 07:59:37: Done! pass1 - making usageList (111 chroms): 5 millis pass2 - checking and writing primary data (9363 records, 4 fields): 17 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。