Job ID = 2001552 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T19:54:50 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:55:00 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:03:13 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:03:22 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:03:43 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:04:57 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:06:03 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 89,468,254 reads read : 89,468,254 reads written : 89,468,254 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:15:22 89468254 reads; of these: 89468254 (100.00%) were unpaired; of these: 1643789 (1.84%) aligned 0 times 73171946 (81.79%) aligned exactly 1 time 14652519 (16.38%) aligned >1 times 98.16% overall alignment rate Time searching: 01:15:25 Overall time: 01:15:25 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 15580812 / 87824465 = 0.1774 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 07:09:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:09:20: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:09:20: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:09:21: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:09:21: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:09:21: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:09:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:09:22: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:09:22: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:09:28: 1000000 INFO @ Fri, 05 Jul 2019 07:09:29: 1000000 INFO @ Fri, 05 Jul 2019 07:09:32: 1000000 INFO @ Fri, 05 Jul 2019 07:09:35: 2000000 INFO @ Fri, 05 Jul 2019 07:09:37: 2000000 INFO @ Fri, 05 Jul 2019 07:09:41: 2000000 INFO @ Fri, 05 Jul 2019 07:09:43: 3000000 INFO @ Fri, 05 Jul 2019 07:09:46: 3000000 INFO @ Fri, 05 Jul 2019 07:09:50: 4000000 INFO @ Fri, 05 Jul 2019 07:09:51: 3000000 INFO @ Fri, 05 Jul 2019 07:09:54: 4000000 INFO @ Fri, 05 Jul 2019 07:09:58: 5000000 INFO @ Fri, 05 Jul 2019 07:10:00: 4000000 INFO @ Fri, 05 Jul 2019 07:10:02: 5000000 INFO @ Fri, 05 Jul 2019 07:10:05: 6000000 INFO @ Fri, 05 Jul 2019 07:10:09: 5000000 INFO @ Fri, 05 Jul 2019 07:10:10: 6000000 INFO @ Fri, 05 Jul 2019 07:10:13: 7000000 INFO @ Fri, 05 Jul 2019 07:10:18: 6000000 INFO @ Fri, 05 Jul 2019 07:10:20: 7000000 INFO @ Fri, 05 Jul 2019 07:10:21: 8000000 INFO @ Fri, 05 Jul 2019 07:10:28: 7000000 INFO @ Fri, 05 Jul 2019 07:10:29: 8000000 INFO @ Fri, 05 Jul 2019 07:10:31: 9000000 INFO @ Fri, 05 Jul 2019 07:10:37: 8000000 INFO @ Fri, 05 Jul 2019 07:10:38: 9000000 INFO @ Fri, 05 Jul 2019 07:10:40: 10000000 INFO @ Fri, 05 Jul 2019 07:10:46: 9000000 INFO @ Fri, 05 Jul 2019 07:10:46: 10000000 INFO @ Fri, 05 Jul 2019 07:10:47: 11000000 INFO @ Fri, 05 Jul 2019 07:10:54: 11000000 INFO @ Fri, 05 Jul 2019 07:10:55: 12000000 INFO @ Fri, 05 Jul 2019 07:10:55: 10000000 INFO @ Fri, 05 Jul 2019 07:11:02: 13000000 INFO @ Fri, 05 Jul 2019 07:11:03: 12000000 INFO @ Fri, 05 Jul 2019 07:11:05: 11000000 INFO @ Fri, 05 Jul 2019 07:11:09: 14000000 INFO @ Fri, 05 Jul 2019 07:11:11: 13000000 INFO @ Fri, 05 Jul 2019 07:11:14: 12000000 INFO @ Fri, 05 Jul 2019 07:11:17: 15000000 INFO @ Fri, 05 Jul 2019 07:11:19: 14000000 INFO @ Fri, 05 Jul 2019 07:11:23: 13000000 INFO @ Fri, 05 Jul 2019 07:11:24: 16000000 INFO @ Fri, 05 Jul 2019 07:11:27: 15000000 INFO @ Fri, 05 Jul 2019 07:11:31: 17000000 INFO @ Fri, 05 Jul 2019 07:11:33: 14000000 INFO @ Fri, 05 Jul 2019 07:11:35: 16000000 INFO @ Fri, 05 Jul 2019 07:11:39: 18000000 INFO @ Fri, 05 Jul 2019 07:11:42: 15000000 INFO @ Fri, 05 Jul 2019 07:11:44: 17000000 INFO @ Fri, 05 Jul 2019 07:11:46: 19000000 INFO @ Fri, 05 Jul 2019 07:11:51: 16000000 INFO @ Fri, 05 Jul 2019 07:11:52: 18000000 INFO @ Fri, 05 Jul 2019 07:11:53: 20000000 INFO @ Fri, 05 Jul 2019 07:12:00: 19000000 INFO @ Fri, 05 Jul 2019 07:12:00: 17000000 INFO @ Fri, 05 Jul 2019 07:12:01: 21000000 INFO @ Fri, 05 Jul 2019 07:12:08: 20000000 INFO @ Fri, 05 Jul 2019 07:12:08: 22000000 INFO @ Fri, 05 Jul 2019 07:12:09: 18000000 INFO @ Fri, 05 Jul 2019 07:12:15: 23000000 INFO @ Fri, 05 Jul 2019 07:12:16: 21000000 INFO @ Fri, 05 Jul 2019 07:12:19: 19000000 INFO @ Fri, 05 Jul 2019 07:12:23: 24000000 INFO @ Fri, 05 Jul 2019 07:12:24: 22000000 INFO @ Fri, 05 Jul 2019 07:12:28: 20000000 INFO @ Fri, 05 Jul 2019 07:12:30: 25000000 INFO @ Fri, 05 Jul 2019 07:12:32: 23000000 INFO @ Fri, 05 Jul 2019 07:12:37: 21000000 INFO @ Fri, 05 Jul 2019 07:12:38: 26000000 INFO @ Fri, 05 Jul 2019 07:12:40: 24000000 INFO @ Fri, 05 Jul 2019 07:12:46: 27000000 INFO @ Fri, 05 Jul 2019 07:12:46: 22000000 INFO @ Fri, 05 Jul 2019 07:12:48: 25000000 INFO @ Fri, 05 Jul 2019 07:12:55: 28000000 INFO @ Fri, 05 Jul 2019 07:12:55: 23000000 INFO @ Fri, 05 Jul 2019 07:12:57: 26000000 INFO @ Fri, 05 Jul 2019 07:13:03: 29000000 INFO @ Fri, 05 Jul 2019 07:13:05: 27000000 INFO @ Fri, 05 Jul 2019 07:13:05: 24000000 INFO @ Fri, 05 Jul 2019 07:13:11: 30000000 INFO @ Fri, 05 Jul 2019 07:13:14: 28000000 INFO @ Fri, 05 Jul 2019 07:13:14: 25000000 INFO @ Fri, 05 Jul 2019 07:13:18: 31000000 INFO @ Fri, 05 Jul 2019 07:13:23: 29000000 INFO @ Fri, 05 Jul 2019 07:13:23: 26000000 INFO @ Fri, 05 Jul 2019 07:13:25: 32000000 INFO @ Fri, 05 Jul 2019 07:13:31: 30000000 INFO @ Fri, 05 Jul 2019 07:13:32: 33000000 INFO @ Fri, 05 Jul 2019 07:13:33: 27000000 INFO @ Fri, 05 Jul 2019 07:13:39: 31000000 INFO @ Fri, 05 Jul 2019 07:13:40: 34000000 INFO @ Fri, 05 Jul 2019 07:13:42: 28000000 INFO @ Fri, 05 Jul 2019 07:13:47: 32000000 INFO @ Fri, 05 Jul 2019 07:13:47: 35000000 INFO @ Fri, 05 Jul 2019 07:13:51: 29000000 INFO @ Fri, 05 Jul 2019 07:13:54: 36000000 INFO @ Fri, 05 Jul 2019 07:13:55: 33000000 INFO @ Fri, 05 Jul 2019 07:14:00: 30000000 INFO @ Fri, 05 Jul 2019 07:14:02: 37000000 INFO @ Fri, 05 Jul 2019 07:14:03: 34000000 INFO @ Fri, 05 Jul 2019 07:14:09: 38000000 INFO @ Fri, 05 Jul 2019 07:14:10: 31000000 INFO @ Fri, 05 Jul 2019 07:14:11: 35000000 INFO @ Fri, 05 Jul 2019 07:14:16: 39000000 INFO @ Fri, 05 Jul 2019 07:14:19: 32000000 INFO @ Fri, 05 Jul 2019 07:14:19: 36000000 INFO @ Fri, 05 Jul 2019 07:14:24: 40000000 INFO @ Fri, 05 Jul 2019 07:14:27: 37000000 INFO @ Fri, 05 Jul 2019 07:14:28: 33000000 INFO @ Fri, 05 Jul 2019 07:14:31: 41000000 INFO @ Fri, 05 Jul 2019 07:14:35: 38000000 INFO @ Fri, 05 Jul 2019 07:14:37: 34000000 INFO @ Fri, 05 Jul 2019 07:14:39: 42000000 INFO @ Fri, 05 Jul 2019 07:14:43: 39000000 INFO @ Fri, 05 Jul 2019 07:14:46: 43000000 INFO @ Fri, 05 Jul 2019 07:14:46: 35000000 INFO @ Fri, 05 Jul 2019 07:14:51: 40000000 INFO @ Fri, 05 Jul 2019 07:14:53: 44000000 INFO @ Fri, 05 Jul 2019 07:14:55: 36000000 INFO @ Fri, 05 Jul 2019 07:15:00: 41000000 INFO @ Fri, 05 Jul 2019 07:15:01: 45000000 INFO @ Fri, 05 Jul 2019 07:15:04: 37000000 INFO @ Fri, 05 Jul 2019 07:15:08: 46000000 INFO @ Fri, 05 Jul 2019 07:15:08: 42000000 INFO @ Fri, 05 Jul 2019 07:15:14: 38000000 INFO @ Fri, 05 Jul 2019 07:15:15: 47000000 INFO @ Fri, 05 Jul 2019 07:15:17: 43000000 INFO @ Fri, 05 Jul 2019 07:15:23: 48000000 INFO @ Fri, 05 Jul 2019 07:15:23: 39000000 INFO @ Fri, 05 Jul 2019 07:15:25: 44000000 INFO @ Fri, 05 Jul 2019 07:15:30: 49000000 INFO @ Fri, 05 Jul 2019 07:15:32: 40000000 INFO @ Fri, 05 Jul 2019 07:15:33: 45000000 INFO @ Fri, 05 Jul 2019 07:15:37: 50000000 INFO @ Fri, 05 Jul 2019 07:15:41: 46000000 INFO @ Fri, 05 Jul 2019 07:15:42: 41000000 INFO @ Fri, 05 Jul 2019 07:15:45: 51000000 INFO @ Fri, 05 Jul 2019 07:15:50: 47000000 INFO @ Fri, 05 Jul 2019 07:15:51: 42000000 INFO @ Fri, 05 Jul 2019 07:15:52: 52000000 INFO @ Fri, 05 Jul 2019 07:15:58: 48000000 INFO @ Fri, 05 Jul 2019 07:15:59: 53000000 INFO @ Fri, 05 Jul 2019 07:16:01: 43000000 INFO @ Fri, 05 Jul 2019 07:16:06: 49000000 INFO @ Fri, 05 Jul 2019 07:16:07: 54000000 INFO @ Fri, 05 Jul 2019 07:16:10: 44000000 INFO @ Fri, 05 Jul 2019 07:16:14: 55000000 INFO @ Fri, 05 Jul 2019 07:16:14: 50000000 INFO @ Fri, 05 Jul 2019 07:16:19: 45000000 INFO @ Fri, 05 Jul 2019 07:16:21: 56000000 INFO @ Fri, 05 Jul 2019 07:16:22: 51000000 INFO @ Fri, 05 Jul 2019 07:16:28: 57000000 INFO @ Fri, 05 Jul 2019 07:16:29: 46000000 INFO @ Fri, 05 Jul 2019 07:16:30: 52000000 INFO @ Fri, 05 Jul 2019 07:16:36: 58000000 INFO @ Fri, 05 Jul 2019 07:16:38: 47000000 INFO @ Fri, 05 Jul 2019 07:16:39: 53000000 INFO @ Fri, 05 Jul 2019 07:16:43: 59000000 INFO @ Fri, 05 Jul 2019 07:16:47: 54000000 INFO @ Fri, 05 Jul 2019 07:16:47: 48000000 INFO @ Fri, 05 Jul 2019 07:16:50: 60000000 INFO @ Fri, 05 Jul 2019 07:16:55: 55000000 INFO @ Fri, 05 Jul 2019 07:16:56: 49000000 INFO @ Fri, 05 Jul 2019 07:16:58: 61000000 INFO @ Fri, 05 Jul 2019 07:17:03: 56000000 INFO @ Fri, 05 Jul 2019 07:17:05: 62000000 INFO @ Fri, 05 Jul 2019 07:17:06: 50000000 INFO @ Fri, 05 Jul 2019 07:17:11: 57000000 INFO @ Fri, 05 Jul 2019 07:17:12: 63000000 INFO @ Fri, 05 Jul 2019 07:17:15: 51000000 INFO @ Fri, 05 Jul 2019 07:17:19: 58000000 INFO @ Fri, 05 Jul 2019 07:17:20: 64000000 INFO @ Fri, 05 Jul 2019 07:17:24: 52000000 INFO @ Fri, 05 Jul 2019 07:17:27: 65000000 INFO @ Fri, 05 Jul 2019 07:17:28: 59000000 INFO @ Fri, 05 Jul 2019 07:17:33: 53000000 INFO @ Fri, 05 Jul 2019 07:17:34: 66000000 INFO @ Fri, 05 Jul 2019 07:17:36: 60000000 INFO @ Fri, 05 Jul 2019 07:17:42: 67000000 INFO @ Fri, 05 Jul 2019 07:17:43: 54000000 INFO @ Fri, 05 Jul 2019 07:17:44: 61000000 INFO @ Fri, 05 Jul 2019 07:17:49: 68000000 INFO @ Fri, 05 Jul 2019 07:17:52: 55000000 INFO @ Fri, 05 Jul 2019 07:17:52: 62000000 INFO @ Fri, 05 Jul 2019 07:17:56: 69000000 INFO @ Fri, 05 Jul 2019 07:18:00: 63000000 INFO @ Fri, 05 Jul 2019 07:18:01: 56000000 INFO @ Fri, 05 Jul 2019 07:18:04: 70000000 INFO @ Fri, 05 Jul 2019 07:18:08: 64000000 INFO @ Fri, 05 Jul 2019 07:18:10: 57000000 INFO @ Fri, 05 Jul 2019 07:18:11: 71000000 INFO @ Fri, 05 Jul 2019 07:18:16: 65000000 INFO @ Fri, 05 Jul 2019 07:18:19: 72000000 INFO @ Fri, 05 Jul 2019 07:18:19: 58000000 INFO @ Fri, 05 Jul 2019 07:18:21: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:18:21: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:18:21: #1 total tags in treatment: 72243653 INFO @ Fri, 05 Jul 2019 07:18:21: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:18:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:18:23: #1 tags after filtering in treatment: 72243550 INFO @ Fri, 05 Jul 2019 07:18:23: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:18:23: #1 finished! INFO @ Fri, 05 Jul 2019 07:18:23: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:18:23: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:18:25: 66000000 INFO @ Fri, 05 Jul 2019 07:18:29: 59000000 INFO @ Fri, 05 Jul 2019 07:18:33: 67000000 INFO @ Fri, 05 Jul 2019 07:18:35: #2 number of paired peaks: 88755 INFO @ Fri, 05 Jul 2019 07:18:35: start model_add_line... INFO @ Fri, 05 Jul 2019 07:18:36: start X-correlation... INFO @ Fri, 05 Jul 2019 07:18:36: end of X-cor INFO @ Fri, 05 Jul 2019 07:18:36: #2 finished! INFO @ Fri, 05 Jul 2019 07:18:36: #2 predicted fragment length is 121 bps INFO @ Fri, 05 Jul 2019 07:18:36: #2 alternative fragment length(s) may be 4,121 bps INFO @ Fri, 05 Jul 2019 07:18:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.05_model.r INFO @ Fri, 05 Jul 2019 07:18:36: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:18:36: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:18:38: 60000000 INFO @ Fri, 05 Jul 2019 07:18:41: 68000000 INFO @ Fri, 05 Jul 2019 07:18:47: 61000000 INFO @ Fri, 05 Jul 2019 07:18:49: 69000000 INFO @ Fri, 05 Jul 2019 07:18:56: 62000000 INFO @ Fri, 05 Jul 2019 07:18:57: 70000000 INFO @ Fri, 05 Jul 2019 07:19:05: 63000000 INFO @ Fri, 05 Jul 2019 07:19:05: 71000000 INFO @ Fri, 05 Jul 2019 07:19:13: 72000000 INFO @ Fri, 05 Jul 2019 07:19:14: 64000000 INFO @ Fri, 05 Jul 2019 07:19:16: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:19:16: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:19:16: #1 total tags in treatment: 72243653 INFO @ Fri, 05 Jul 2019 07:19:16: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:19:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:19:18: #1 tags after filtering in treatment: 72243550 INFO @ Fri, 05 Jul 2019 07:19:18: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:19:18: #1 finished! INFO @ Fri, 05 Jul 2019 07:19:18: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:19:18: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:19:24: 65000000 INFO @ Fri, 05 Jul 2019 07:19:30: #2 number of paired peaks: 88755 INFO @ Fri, 05 Jul 2019 07:19:30: start model_add_line... INFO @ Fri, 05 Jul 2019 07:19:31: start X-correlation... INFO @ Fri, 05 Jul 2019 07:19:31: end of X-cor INFO @ Fri, 05 Jul 2019 07:19:31: #2 finished! INFO @ Fri, 05 Jul 2019 07:19:31: #2 predicted fragment length is 121 bps INFO @ Fri, 05 Jul 2019 07:19:31: #2 alternative fragment length(s) may be 4,121 bps INFO @ Fri, 05 Jul 2019 07:19:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.10_model.r INFO @ Fri, 05 Jul 2019 07:19:31: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:19:31: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:19:33: 66000000 INFO @ Fri, 05 Jul 2019 07:19:42: 67000000 INFO @ Fri, 05 Jul 2019 07:19:51: 68000000 INFO @ Fri, 05 Jul 2019 07:20:01: 69000000 INFO @ Fri, 05 Jul 2019 07:20:10: 70000000 INFO @ Fri, 05 Jul 2019 07:20:19: 71000000 INFO @ Fri, 05 Jul 2019 07:20:28: 72000000 INFO @ Fri, 05 Jul 2019 07:20:31: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:20:31: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:20:31: #1 total tags in treatment: 72243653 INFO @ Fri, 05 Jul 2019 07:20:31: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:20:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:20:33: #1 tags after filtering in treatment: 72243550 INFO @ Fri, 05 Jul 2019 07:20:33: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:20:33: #1 finished! INFO @ Fri, 05 Jul 2019 07:20:33: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:20:33: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:20:45: #2 number of paired peaks: 88755 INFO @ Fri, 05 Jul 2019 07:20:45: start model_add_line... INFO @ Fri, 05 Jul 2019 07:20:46: start X-correlation... INFO @ Fri, 05 Jul 2019 07:20:46: end of X-cor INFO @ Fri, 05 Jul 2019 07:20:46: #2 finished! INFO @ Fri, 05 Jul 2019 07:20:46: #2 predicted fragment length is 121 bps INFO @ Fri, 05 Jul 2019 07:20:46: #2 alternative fragment length(s) may be 4,121 bps INFO @ Fri, 05 Jul 2019 07:20:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.20_model.r INFO @ Fri, 05 Jul 2019 07:20:46: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:20:46: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:22:18: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:23:22: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:24:14: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.05_peaks.xls INFO @ Fri, 05 Jul 2019 07:24:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:24:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.05_summits.bed INFO @ Fri, 05 Jul 2019 07:24:14: Done! pass1 - making usageList (106 chroms): 9 millis pass2 - checking and writing primary data (25988 records, 4 fields): 38 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:24:27: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:25:17: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.10_peaks.xls INFO @ Fri, 05 Jul 2019 07:25:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:25:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.10_summits.bed INFO @ Fri, 05 Jul 2019 07:25:17: Done! pass1 - making usageList (55 chroms): 4 millis pass2 - checking and writing primary data (4239 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:26:21: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.20_peaks.xls INFO @ Fri, 05 Jul 2019 07:26:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:26:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101895/ERX101895.20_summits.bed INFO @ Fri, 05 Jul 2019 07:26:21: Done! pass1 - making usageList (32 chroms): 1 millis pass2 - checking and writing primary data (429 records, 4 fields): 5 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。